Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09105

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09100 and DZA65_RS09105 overlap by 9 nucleotidesDZA65_RS09105 and DZA65_RS09110 are separated by 114 nucleotides DZA65_RS09100: DZA65_RS09100 - helix-turn-helix transcriptional regulator, at 1,916,637 to 1,917,512 _RS09100 DZA65_RS09105: DZA65_RS09105 - peptidase T, at 1,917,504 to 1,918,745 _RS09105 DZA65_RS09110: DZA65_RS09110 - ABC transporter substrate-binding protein, at 1,918,860 to 1,920,452 _RS09110 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1916.598 kb on - strandat 1916.624 kb on + strandat 1916.625 kb on - strandat 1916.647 kb on - strandat 1916.662 kb on + strandat 1916.662 kb on + strandat 1916.663 kb on - strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.665 kb on + strandat 1916.666 kb on - strandat 1916.666 kb on - strandat 1916.666 kb on - strandat 1916.666 kb on - strandat 1916.666 kb on - strandat 1916.666 kb on - strandat 1916.675 kb on + strandat 1916.676 kb on - strandat 1916.676 kb on - strandat 1916.676 kb on - strandat 1916.790 kb on + strand, within DZA65_RS09100at 1916.790 kb on + strand, within DZA65_RS09100at 1916.790 kb on + strand, within DZA65_RS09100at 1916.790 kb on + strand, within DZA65_RS09100at 1916.790 kb on + strand, within DZA65_RS09100at 1916.790 kb on + strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.791 kb on - strand, within DZA65_RS09100at 1916.814 kb on + strand, within DZA65_RS09100at 1916.814 kb on + strand, within DZA65_RS09100at 1916.815 kb on - strand, within DZA65_RS09100at 1916.815 kb on - strand, within DZA65_RS09100at 1916.931 kb on + strand, within DZA65_RS09100at 1916.931 kb on + strand, within DZA65_RS09100at 1916.931 kb on + strand, within DZA65_RS09100at 1916.932 kb on - strand, within DZA65_RS09100at 1916.937 kb on - strand, within DZA65_RS09100at 1917.045 kb on + strand, within DZA65_RS09100at 1917.100 kb on + strand, within DZA65_RS09100at 1917.100 kb on + strand, within DZA65_RS09100at 1917.100 kb on + strand, within DZA65_RS09100at 1917.101 kb on - strand, within DZA65_RS09100at 1917.131 kb on + strand, within DZA65_RS09100at 1917.131 kb on + strand, within DZA65_RS09100at 1917.132 kb on - strand, within DZA65_RS09100at 1917.132 kb on - strand, within DZA65_RS09100at 1917.132 kb on - strand, within DZA65_RS09100at 1917.145 kb on - strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.339 kb on + strand, within DZA65_RS09100at 1917.340 kb on - strand, within DZA65_RS09100at 1917.340 kb on - strand, within DZA65_RS09100at 1917.340 kb on - strand, within DZA65_RS09100at 1917.340 kb on - strand, within DZA65_RS09100at 1917.340 kb on - strand, within DZA65_RS09100at 1917.537 kb on + strandat 1917.537 kb on + strandat 1917.641 kb on + strand, within DZA65_RS09105at 1917.641 kb on + strand, within DZA65_RS09105at 1917.641 kb on + strand, within DZA65_RS09105at 1917.641 kb on + strand, within DZA65_RS09105at 1917.642 kb on - strand, within DZA65_RS09105at 1917.642 kb on - strand, within DZA65_RS09105at 1917.714 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.782 kb on - strand, within DZA65_RS09105at 1917.820 kb on + strand, within DZA65_RS09105at 1917.852 kb on + strand, within DZA65_RS09105at 1917.852 kb on + strand, within DZA65_RS09105at 1917.852 kb on + strand, within DZA65_RS09105at 1917.853 kb on - strand, within DZA65_RS09105at 1917.853 kb on - strand, within DZA65_RS09105at 1917.853 kb on - strand, within DZA65_RS09105at 1917.864 kb on - strand, within DZA65_RS09105at 1917.864 kb on - strand, within DZA65_RS09105at 1917.939 kb on - strand, within DZA65_RS09105at 1917.939 kb on - strand, within DZA65_RS09105at 1917.955 kb on + strand, within DZA65_RS09105at 1917.955 kb on + strand, within DZA65_RS09105at 1917.955 kb on + strand, within DZA65_RS09105at 1917.956 kb on - strand, within DZA65_RS09105at 1917.956 kb on - strand, within DZA65_RS09105at 1917.956 kb on - strand, within DZA65_RS09105at 1918.109 kb on + strand, within DZA65_RS09105at 1918.120 kb on + strand, within DZA65_RS09105at 1918.120 kb on + strand, within DZA65_RS09105at 1918.121 kb on - strand, within DZA65_RS09105at 1918.121 kb on - strand, within DZA65_RS09105at 1918.121 kb on - strand, within DZA65_RS09105at 1918.157 kb on - strand, within DZA65_RS09105at 1918.349 kb on + strand, within DZA65_RS09105at 1918.421 kb on + strand, within DZA65_RS09105at 1918.422 kb on - strand, within DZA65_RS09105at 1918.422 kb on - strand, within DZA65_RS09105at 1918.422 kb on - strand, within DZA65_RS09105at 1918.442 kb on + strand, within DZA65_RS09105at 1918.699 kb on + strandat 1918.705 kb on + strandat 1918.706 kb on - strandat 1918.756 kb on + strandat 1918.756 kb on + strandat 1918.762 kb on + strandat 1918.762 kb on + strandat 1918.763 kb on - strandat 1918.784 kb on - strandat 1918.817 kb on - strandat 1918.817 kb on - strandat 1918.817 kb on - strandat 1918.842 kb on + strandat 1918.843 kb on - strandat 1918.843 kb on - strandat 1918.941 kb on + strandat 1918.941 kb on + strandat 1918.941 kb on + strandat 1918.941 kb on + strandat 1918.983 kb on + strandat 1918.983 kb on + strandat 1918.983 kb on + strandat 1918.983 kb on + strandat 1918.985 kb on + strandat 1918.985 kb on + strandat 1918.985 kb on + strandat 1918.985 kb on + strandat 1918.985 kb on + strandat 1918.985 kb on + strandat 1918.986 kb on - strandat 1918.986 kb on - strandat 1918.986 kb on - strandat 1918.986 kb on - strandat 1918.986 kb on - strandat 1918.986 kb on - strandat 1918.986 kb on - strandat 1919.021 kb on + strand, within DZA65_RS09110at 1919.021 kb on + strand, within DZA65_RS09110at 1919.021 kb on + strand, within DZA65_RS09110at 1919.021 kb on + strand, within DZA65_RS09110at 1919.021 kb on + strand, within DZA65_RS09110at 1919.022 kb on - strand, within DZA65_RS09110at 1919.022 kb on - strand, within DZA65_RS09110at 1919.022 kb on - strand, within DZA65_RS09110at 1919.022 kb on - strand, within DZA65_RS09110at 1919.025 kb on + strand, within DZA65_RS09110at 1919.025 kb on + strand, within DZA65_RS09110at 1919.025 kb on + strand, within DZA65_RS09110at 1919.025 kb on + strand, within DZA65_RS09110at 1919.025 kb on + strand, within DZA65_RS09110at 1919.026 kb on - strand, within DZA65_RS09110at 1919.026 kb on - strand, within DZA65_RS09110at 1919.026 kb on - strand, within DZA65_RS09110at 1919.115 kb on + strand, within DZA65_RS09110at 1919.115 kb on + strand, within DZA65_RS09110at 1919.116 kb on - strand, within DZA65_RS09110at 1919.116 kb on - strand, within DZA65_RS09110at 1919.116 kb on - strand, within DZA65_RS09110at 1919.116 kb on - strand, within DZA65_RS09110at 1919.116 kb on - strand, within DZA65_RS09110at 1919.132 kb on + strand, within DZA65_RS09110at 1919.132 kb on + strand, within DZA65_RS09110at 1919.154 kb on - strand, within DZA65_RS09110at 1919.238 kb on + strand, within DZA65_RS09110at 1919.262 kb on + strand, within DZA65_RS09110at 1919.262 kb on + strand, within DZA65_RS09110at 1919.262 kb on + strand, within DZA65_RS09110at 1919.262 kb on + strand, within DZA65_RS09110at 1919.263 kb on - strand, within DZA65_RS09110at 1919.263 kb on - strand, within DZA65_RS09110at 1919.263 kb on - strand, within DZA65_RS09110at 1919.263 kb on - strand, within DZA65_RS09110at 1919.263 kb on - strand, within DZA65_RS09110at 1919.263 kb on - strand, within DZA65_RS09110at 1919.325 kb on + strand, within DZA65_RS09110at 1919.325 kb on + strand, within DZA65_RS09110at 1919.325 kb on + strand, within DZA65_RS09110at 1919.339 kb on + strand, within DZA65_RS09110at 1919.386 kb on - strand, within DZA65_RS09110at 1919.412 kb on + strand, within DZA65_RS09110at 1919.413 kb on - strand, within DZA65_RS09110at 1919.413 kb on - strand, within DZA65_RS09110at 1919.413 kb on - strand, within DZA65_RS09110at 1919.496 kb on + strand, within DZA65_RS09110at 1919.539 kb on - strand, within DZA65_RS09110at 1919.671 kb on + strand, within DZA65_RS09110at 1919.671 kb on + strand, within DZA65_RS09110at 1919.671 kb on + strand, within DZA65_RS09110at 1919.671 kb on + strand, within DZA65_RS09110at 1919.671 kb on + strand, within DZA65_RS09110at 1919.671 kb on + strand, within DZA65_RS09110at 1919.671 kb on + strand, within DZA65_RS09110at 1919.672 kb on - strand, within DZA65_RS09110at 1919.672 kb on - strand, within DZA65_RS09110at 1919.672 kb on - strand, within DZA65_RS09110at 1919.672 kb on - strand, within DZA65_RS09110at 1919.672 kb on - strand, within DZA65_RS09110at 1919.672 kb on - strand, within DZA65_RS09110

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,916,598 - -1.3
1,916,624 + -2.2
1,916,625 - +0.7
1,916,647 - -1.0
1,916,662 + -0.3
1,916,662 + +0.2
1,916,663 - +0.6
1,916,665 + -0.0
1,916,665 + -0.3
1,916,665 + +0.9
1,916,665 + -0.2
1,916,665 + +0.7
1,916,665 + +1.7
1,916,665 + -0.8
1,916,665 + +0.7
1,916,665 + -2.0
1,916,666 - +1.1
1,916,666 - -0.1
1,916,666 - -0.2
1,916,666 - -0.5
1,916,666 - -0.0
1,916,666 - -2.3
1,916,675 + -1.8
1,916,676 - -0.6
1,916,676 - +0.2
1,916,676 - +0.2
1,916,790 + DZA65_RS09100 0.17 -0.0
1,916,790 + DZA65_RS09100 0.17 +0.0
1,916,790 + DZA65_RS09100 0.17 +0.9
1,916,790 + DZA65_RS09100 0.17 -1.0
1,916,790 + DZA65_RS09100 0.17 -0.9
1,916,790 + DZA65_RS09100 0.17 -1.9
1,916,791 - DZA65_RS09100 0.18 -0.6
1,916,791 - DZA65_RS09100 0.18 -0.6
1,916,791 - DZA65_RS09100 0.18 -0.5
1,916,791 - DZA65_RS09100 0.18 +0.0
1,916,791 - DZA65_RS09100 0.18 +0.3
1,916,791 - DZA65_RS09100 0.18 +1.6
1,916,791 - DZA65_RS09100 0.18 -1.8
1,916,791 - DZA65_RS09100 0.18 +0.8
1,916,791 - DZA65_RS09100 0.18 -1.7
1,916,791 - DZA65_RS09100 0.18 -1.1
1,916,791 - DZA65_RS09100 0.18 -0.8
1,916,791 - DZA65_RS09100 0.18 +0.6
1,916,814 + DZA65_RS09100 0.20 -1.2
1,916,814 + DZA65_RS09100 0.20 +0.4
1,916,815 - DZA65_RS09100 0.20 -0.9
1,916,815 - DZA65_RS09100 0.20 -0.2
1,916,931 + DZA65_RS09100 0.34 +0.7
1,916,931 + DZA65_RS09100 0.34 +0.1
1,916,931 + DZA65_RS09100 0.34 +0.2
1,916,932 - DZA65_RS09100 0.34 -1.2
1,916,937 - DZA65_RS09100 0.34 +0.0
1,917,045 + DZA65_RS09100 0.47 +1.4
1,917,100 + DZA65_RS09100 0.53 -1.0
1,917,100 + DZA65_RS09100 0.53 -0.4
1,917,100 + DZA65_RS09100 0.53 -0.3
1,917,101 - DZA65_RS09100 0.53 -0.2
1,917,131 + DZA65_RS09100 0.56 -1.8
1,917,131 + DZA65_RS09100 0.56 +0.2
1,917,132 - DZA65_RS09100 0.57 +0.7
1,917,132 - DZA65_RS09100 0.57 +0.7
1,917,132 - DZA65_RS09100 0.57 -0.1
1,917,145 - DZA65_RS09100 0.58 +0.3
1,917,339 + DZA65_RS09100 0.80 +0.5
1,917,339 + DZA65_RS09100 0.80 +0.5
1,917,339 + DZA65_RS09100 0.80 -0.0
1,917,339 + DZA65_RS09100 0.80 +0.0
1,917,339 + DZA65_RS09100 0.80 -1.6
1,917,339 + DZA65_RS09100 0.80 -0.1
1,917,339 + DZA65_RS09100 0.80 +0.7
1,917,339 + DZA65_RS09100 0.80 +0.2
1,917,339 + DZA65_RS09100 0.80 +0.7
1,917,340 - DZA65_RS09100 0.80 +1.2
1,917,340 - DZA65_RS09100 0.80 +0.4
1,917,340 - DZA65_RS09100 0.80 +0.2
1,917,340 - DZA65_RS09100 0.80 +1.0
1,917,340 - DZA65_RS09100 0.80 -0.2
1,917,537 + -1.0
1,917,537 + +0.2
1,917,641 + DZA65_RS09105 0.11 -0.7
1,917,641 + DZA65_RS09105 0.11 -1.6
1,917,641 + DZA65_RS09105 0.11 +0.3
1,917,641 + DZA65_RS09105 0.11 +0.1
1,917,642 - DZA65_RS09105 0.11 -0.3
1,917,642 - DZA65_RS09105 0.11 +0.7
1,917,714 - DZA65_RS09105 0.17 -0.8
1,917,782 - DZA65_RS09105 0.22 +0.1
1,917,782 - DZA65_RS09105 0.22 +0.8
1,917,782 - DZA65_RS09105 0.22 +0.9
1,917,782 - DZA65_RS09105 0.22 -1.6
1,917,782 - DZA65_RS09105 0.22 +0.7
1,917,782 - DZA65_RS09105 0.22 +0.2
1,917,782 - DZA65_RS09105 0.22 +0.8
1,917,782 - DZA65_RS09105 0.22 +0.4
1,917,820 + DZA65_RS09105 0.25 -0.0
1,917,852 + DZA65_RS09105 0.28 +0.7
1,917,852 + DZA65_RS09105 0.28 +0.5
1,917,852 + DZA65_RS09105 0.28 -0.8
1,917,853 - DZA65_RS09105 0.28 +0.7
1,917,853 - DZA65_RS09105 0.28 +0.4
1,917,853 - DZA65_RS09105 0.28 +0.5
1,917,864 - DZA65_RS09105 0.29 -0.2
1,917,864 - DZA65_RS09105 0.29 +0.2
1,917,939 - DZA65_RS09105 0.35 +0.3
1,917,939 - DZA65_RS09105 0.35 +1.8
1,917,955 + DZA65_RS09105 0.36 -1.7
1,917,955 + DZA65_RS09105 0.36 +0.6
1,917,955 + DZA65_RS09105 0.36 +0.4
1,917,956 - DZA65_RS09105 0.36 -0.2
1,917,956 - DZA65_RS09105 0.36 -1.3
1,917,956 - DZA65_RS09105 0.36 -0.4
1,918,109 + DZA65_RS09105 0.49 +1.2
1,918,120 + DZA65_RS09105 0.50 -0.1
1,918,120 + DZA65_RS09105 0.50 -1.1
1,918,121 - DZA65_RS09105 0.50 +0.4
1,918,121 - DZA65_RS09105 0.50 +0.6
1,918,121 - DZA65_RS09105 0.50 +0.8
1,918,157 - DZA65_RS09105 0.53 +0.5
1,918,349 + DZA65_RS09105 0.68 +1.5
1,918,421 + DZA65_RS09105 0.74 -0.0
1,918,422 - DZA65_RS09105 0.74 -1.4
1,918,422 - DZA65_RS09105 0.74 +1.1
1,918,422 - DZA65_RS09105 0.74 -0.4
1,918,442 + DZA65_RS09105 0.76 +0.5
1,918,699 + +0.1
1,918,705 + -0.2
1,918,706 - -1.8
1,918,756 + +0.4
1,918,756 + -0.8
1,918,762 + -0.3
1,918,762 + +0.2
1,918,763 - -0.6
1,918,784 - -0.1
1,918,817 - +0.7
1,918,817 - -1.0
1,918,817 - -0.8
1,918,842 + -0.6
1,918,843 - +1.0
1,918,843 - -0.3
1,918,941 + +0.0
1,918,941 + +0.9
1,918,941 + -0.6
1,918,941 + -0.3
1,918,983 + -1.9
1,918,983 + -1.3
1,918,983 + -0.2
1,918,983 + -1.0
1,918,985 + +1.0
1,918,985 + +0.4
1,918,985 + +1.6
1,918,985 + +0.4
1,918,985 + -0.1
1,918,985 + +0.1
1,918,986 - +0.9
1,918,986 - -1.0
1,918,986 - +0.0
1,918,986 - -0.3
1,918,986 - -0.6
1,918,986 - -1.3
1,918,986 - -0.3
1,919,021 + DZA65_RS09110 0.10 -0.3
1,919,021 + DZA65_RS09110 0.10 -1.5
1,919,021 + DZA65_RS09110 0.10 +0.2
1,919,021 + DZA65_RS09110 0.10 +0.2
1,919,021 + DZA65_RS09110 0.10 +0.5
1,919,022 - DZA65_RS09110 0.10 +0.2
1,919,022 - DZA65_RS09110 0.10 +0.4
1,919,022 - DZA65_RS09110 0.10 +0.2
1,919,022 - DZA65_RS09110 0.10 -0.8
1,919,025 + DZA65_RS09110 0.10 -0.2
1,919,025 + DZA65_RS09110 0.10 -0.5
1,919,025 + DZA65_RS09110 0.10 +0.2
1,919,025 + DZA65_RS09110 0.10 -1.3
1,919,025 + DZA65_RS09110 0.10 -0.8
1,919,026 - DZA65_RS09110 0.10 -0.0
1,919,026 - DZA65_RS09110 0.10 +1.6
1,919,026 - DZA65_RS09110 0.10 +0.6
1,919,115 + DZA65_RS09110 0.16 -1.2
1,919,115 + DZA65_RS09110 0.16 +0.0
1,919,116 - DZA65_RS09110 0.16 +0.2
1,919,116 - DZA65_RS09110 0.16 -2.8
1,919,116 - DZA65_RS09110 0.16 -1.6
1,919,116 - DZA65_RS09110 0.16 +0.5
1,919,116 - DZA65_RS09110 0.16 +1.1
1,919,132 + DZA65_RS09110 0.17 -0.8
1,919,132 + DZA65_RS09110 0.17 -1.3
1,919,154 - DZA65_RS09110 0.18 +0.7
1,919,238 + DZA65_RS09110 0.24 -2.6
1,919,262 + DZA65_RS09110 0.25 +0.2
1,919,262 + DZA65_RS09110 0.25 -0.5
1,919,262 + DZA65_RS09110 0.25 -0.1
1,919,262 + DZA65_RS09110 0.25 -1.0
1,919,263 - DZA65_RS09110 0.25 -0.2
1,919,263 - DZA65_RS09110 0.25 -0.1
1,919,263 - DZA65_RS09110 0.25 -0.1
1,919,263 - DZA65_RS09110 0.25 -0.7
1,919,263 - DZA65_RS09110 0.25 +0.4
1,919,263 - DZA65_RS09110 0.25 -0.8
1,919,325 + DZA65_RS09110 0.29 +0.2
1,919,325 + DZA65_RS09110 0.29 -0.5
1,919,325 + DZA65_RS09110 0.29 +0.5
1,919,339 + DZA65_RS09110 0.30 +0.5
1,919,386 - DZA65_RS09110 0.33 +0.9
1,919,412 + DZA65_RS09110 0.35 -0.8
1,919,413 - DZA65_RS09110 0.35 +0.4
1,919,413 - DZA65_RS09110 0.35 +0.2
1,919,413 - DZA65_RS09110 0.35 -1.3
1,919,496 + DZA65_RS09110 0.40 -0.8
1,919,539 - DZA65_RS09110 0.43 -0.0
1,919,671 + DZA65_RS09110 0.51 +1.2
1,919,671 + DZA65_RS09110 0.51 -0.6
1,919,671 + DZA65_RS09110 0.51 -1.5
1,919,671 + DZA65_RS09110 0.51 +0.4
1,919,671 + DZA65_RS09110 0.51 -0.3
1,919,671 + DZA65_RS09110 0.51 +0.2
1,919,671 + DZA65_RS09110 0.51 -0.3
1,919,672 - DZA65_RS09110 0.51 -0.3
1,919,672 - DZA65_RS09110 0.51 -0.6
1,919,672 - DZA65_RS09110 0.51 -0.8
1,919,672 - DZA65_RS09110 0.51 -0.1
1,919,672 - DZA65_RS09110 0.51 +0.5
1,919,672 - DZA65_RS09110 0.51 -1.1

Or see this region's nucleotide sequence