Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07000

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,449,837	+		DZA65_RS06995	0.45	+0.3
1,449,838	-		DZA65_RS06995	0.45	+0.4
1,450,008	-		DZA65_RS06995	0.57	-1.4
1,450,026	-		DZA65_RS06995	0.58	-1.0
1,450,054	+		DZA65_RS06995	0.60	-0.0
1,450,055	-				+0.8
1,450,125	-		DZA65_RS06995	0.65	+0.3
1,450,242	+		DZA65_RS06995	0.73	-1.0
1,450,242	+		DZA65_RS06995	0.73	-1.7
1,450,243	-		DZA65_RS06995	0.73	-0.7
1,450,243	-		DZA65_RS06995	0.73	+0.3
1,450,243	-		DZA65_RS06995	0.73	-2.0
1,450,243	-		DZA65_RS06995	0.73	+1.1
1,450,246	+		DZA65_RS06995	0.73	-0.1
1,450,246	+		DZA65_RS06995	0.73	-1.0
1,450,246	+		DZA65_RS06995	0.73	+0.3
1,450,246	+		DZA65_RS06995	0.73	+0.2
1,450,246	+		DZA65_RS06995	0.73	-0.5
1,450,246	+		DZA65_RS06995	0.73	-1.4
1,450,246	+		DZA65_RS06995	0.73	+1.6
1,450,246	+		DZA65_RS06995	0.73	+0.5
1,450,246	+		DZA65_RS06995	0.73	-1.7
1,450,247	-		DZA65_RS06995	0.73	+0.1
1,450,247	-		DZA65_RS06995	0.73	+0.5
1,450,331	-		DZA65_RS06995	0.79	-0.2
1,450,774	+				+1.2
1,450,775	-				-1.7
1,450,866	+		DZA65_RS07000	0.17	-0.0
1,450,866	+		DZA65_RS07000	0.17	-1.8
1,450,866	+		DZA65_RS07000	0.17	+0.2
1,450,893	+		DZA65_RS07000	0.21	-0.1
1,450,894	-				+0.3
1,450,894	-		DZA65_RS07000	0.21	-2.5
1,450,894	-		DZA65_RS07000	0.21	+0.3
1,450,894	-		DZA65_RS07000	0.21	-0.9
1,451,119	-		DZA65_RS07000	0.49	-0.3
1,451,254	+		DZA65_RS07000	0.66	-0.6
1,451,255	-		DZA65_RS07000	0.67	-1.7
1,451,278	+		DZA65_RS07000	0.69	-0.4
1,451,437	-		DZA65_RS07000	0.90	+0.9
1,451,437	-		DZA65_RS07000	0.90	+0.6
1,451,437	-		DZA65_RS07000	0.90	-0.4
1,451,553	+				-0.0
1,451,554	-				-0.9
1,451,554	-				+0.8
1,451,554	-				-0.0
1,451,620	+				-0.7
1,451,645	+				+0.1
1,451,646	-				+0.7
1,451,646	-				-0.4
1,451,650	+				+0.9
1,451,650	+				-1.1
1,451,650	+				+0.7
1,451,650	+				-0.5
1,451,650	+				-0.2
1,451,650	+				-0.7
1,451,650	+				+0.5
1,451,650	+				-0.2
1,451,650	+				+0.5
1,451,650	+				-0.1
1,451,651	-				-0.4
1,451,651	-				+0.3
1,451,651	-				+1.2
1,451,651	-				+0.1
1,451,651	-				-1.5
1,451,651	-				+0.1
1,451,655	+				-0.1
1,451,655	+				+0.3
1,451,656	-				+1.0
1,451,716	+				-2.2
1,451,717	-				+0.1
1,451,717	-				-0.2
1,451,717	-				+0.6
1,451,717	-				-0.3
1,451,795	+		DZA65_RS07005	0.52	-1.8
1,451,796	-		DZA65_RS07005	0.53	+0.6
1,451,796	-		DZA65_RS07005	0.53	+0.1
1,451,811	+		DZA65_RS07005	0.63	+0.5
1,451,811	+		DZA65_RS07005	0.63	+0.0
1,451,812	-		DZA65_RS07005	0.63	+1.1
1,451,812	-		DZA65_RS07005	0.63	-0.3
1,451,812	-		DZA65_RS07005	0.63	-0.1
1,451,812	-		DZA65_RS07005	0.63	+0.3
1,451,812	-		DZA65_RS07005	0.63	-1.7
1,451,812	-		DZA65_RS07005	0.63	+1.2
1,451,812	-		DZA65_RS07005	0.63	-0.2
1,451,812	-		DZA65_RS07005	0.63	+0.1
1,451,864	+				-1.0
1,451,865	-				+0.1
1,451,865	-				+0.2
1,451,925	-				-0.2
1,451,925	-				-0.8
1,451,957	+				-0.1
1,451,957	+				+0.5
1,451,981	+				-3.0
1,451,981	+				+0.4
1,451,982	-				-0.1
1,451,988	+				-0.2
1,451,989	-				+0.7
1,451,992	+				+0.3
1,451,993	-				+0.2
1,452,003	+				+1.6
1,452,011	-				+0.3
1,452,011	-				+0.6
1,452,011	-				-0.2
1,452,056	+				+0.3
1,452,056	+				+0.0
1,452,056	+				-0.7
1,452,057	-				-2.5
1,452,057	-				-0.2
1,452,057	-				-0.3
1,452,088	+				-0.3
1,452,101	-				+0.2
1,452,123	+		DZA65_RS07010	0.11	-1.0
1,452,124	-		DZA65_RS07010	0.11	-2.0
1,452,215	+				-0.7
1,452,302	+		DZA65_RS07010	0.34	+0.0
1,452,302	+		DZA65_RS07010	0.34	+0.5
1,452,302	+		DZA65_RS07010	0.34	-0.1
1,452,302	+		DZA65_RS07010	0.34	-0.4
1,452,303	-		DZA65_RS07010	0.34	+0.9
1,452,303	-				-1.7
1,452,303	-		DZA65_RS07010	0.34	+0.1
1,452,303	-				+0.3
1,452,303	-		DZA65_RS07010	0.34	-0.4
1,452,341	+		DZA65_RS07010	0.39	-0.5
1,452,342	-		DZA65_RS07010	0.39	+0.7
1,452,415	+		DZA65_RS07010	0.48	+0.3
1,452,491	+		DZA65_RS07010	0.58	-0.1
1,452,491	+		DZA65_RS07010	0.58	-1.6
1,452,491	+		DZA65_RS07010	0.58	-0.7
1,452,491	+		DZA65_RS07010	0.58	-0.9
1,452,491	+		DZA65_RS07010	0.58	-1.3
1,452,491	+		DZA65_RS07010	0.58	-0.5
1,452,492	-		DZA65_RS07010	0.58	-0.1
1,452,492	-		DZA65_RS07010	0.58	-0.5
1,452,492	-		DZA65_RS07010	0.58	-0.5
1,452,492	-		DZA65_RS07010	0.58	-0.1