Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06175

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06170 and DZA65_RS06175 are separated by 255 nucleotidesDZA65_RS06175 and DZA65_RS06180 are separated by 224 nucleotides DZA65_RS06170: DZA65_RS06170 - molecular chaperone HtpG, at 1,274,734 to 1,276,617 _RS06170 DZA65_RS06175: DZA65_RS06175 - adenylate kinase, at 1,276,873 to 1,277,520 _RS06175 DZA65_RS06180: DZA65_RS06180 - ferrochelatase, at 1,277,745 to 1,278,707 _RS06180 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -3 -2 -1 0 1at 1275.998 kb on - strand, within DZA65_RS06170at 1276.033 kb on + strand, within DZA65_RS06170at 1276.034 kb on - strand, within DZA65_RS06170at 1276.036 kb on + strand, within DZA65_RS06170at 1276.036 kb on + strand, within DZA65_RS06170at 1276.036 kb on + strand, within DZA65_RS06170at 1276.036 kb on + strand, within DZA65_RS06170at 1276.037 kb on - strand, within DZA65_RS06170at 1276.037 kb on - strand, within DZA65_RS06170at 1276.037 kb on - strand, within DZA65_RS06170at 1276.037 kb on - strand, within DZA65_RS06170at 1276.037 kb on - strand, within DZA65_RS06170at 1276.037 kb on - strand, within DZA65_RS06170at 1276.037 kb on - strand, within DZA65_RS06170at 1276.054 kb on + strand, within DZA65_RS06170at 1276.054 kb on + strand, within DZA65_RS06170at 1276.055 kb on - strand, within DZA65_RS06170at 1276.153 kb on + strand, within DZA65_RS06170at 1276.153 kb on + strand, within DZA65_RS06170at 1276.154 kb on - strand, within DZA65_RS06170at 1276.174 kb on - strand, within DZA65_RS06170at 1276.174 kb on - strand, within DZA65_RS06170at 1276.439 kb on - strandat 1276.439 kb on - strandat 1276.560 kb on + strandat 1276.604 kb on + strandat 1276.605 kb on - strandat 1276.622 kb on + strandat 1276.622 kb on + strandat 1276.622 kb on + strandat 1276.622 kb on + strandat 1276.710 kb on + strandat 1276.710 kb on + strandat 1276.710 kb on + strandat 1276.711 kb on - strandat 1276.711 kb on - strandat 1276.711 kb on - strandat 1276.711 kb on - strandat 1276.711 kb on - strandat 1276.758 kb on + strandat 1276.761 kb on + strandat 1276.761 kb on + strandat 1276.761 kb on + strandat 1276.762 kb on - strandat 1276.762 kb on - strandat 1276.762 kb on - strandat 1276.762 kb on - strandat 1277.593 kb on + strandat 1277.594 kb on - strandat 1277.594 kb on - strandat 1277.594 kb on - strandat 1277.594 kb on - strandat 1277.635 kb on - strandat 1277.683 kb on + strandat 1277.683 kb on + strandat 1277.684 kb on - strandat 1277.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,275,998 - DZA65_RS06170 0.67 +0.5
1,276,033 + DZA65_RS06170 0.69 +0.6
1,276,034 - DZA65_RS06170 0.69 +0.4
1,276,036 + DZA65_RS06170 0.69 -1.2
1,276,036 + DZA65_RS06170 0.69 +0.1
1,276,036 + DZA65_RS06170 0.69 +0.3
1,276,036 + DZA65_RS06170 0.69 +0.1
1,276,037 - DZA65_RS06170 0.69 +0.6
1,276,037 - DZA65_RS06170 0.69 -0.2
1,276,037 - DZA65_RS06170 0.69 +0.8
1,276,037 - DZA65_RS06170 0.69 +0.2
1,276,037 - DZA65_RS06170 0.69 -0.0
1,276,037 - DZA65_RS06170 0.69 +1.3
1,276,037 - DZA65_RS06170 0.69 +0.8
1,276,054 + DZA65_RS06170 0.70 +0.5
1,276,054 + DZA65_RS06170 0.70 -2.6
1,276,055 - DZA65_RS06170 0.70 -0.2
1,276,153 + DZA65_RS06170 0.75 -0.3
1,276,153 + DZA65_RS06170 0.75 +0.1
1,276,154 - DZA65_RS06170 0.75 -0.0
1,276,174 - DZA65_RS06170 0.76 +1.3
1,276,174 - DZA65_RS06170 0.76 -1.6
1,276,439 - +0.6
1,276,439 - +0.2
1,276,560 + +0.3
1,276,604 + +0.9
1,276,605 - +1.6
1,276,622 + -0.1
1,276,622 + -0.0
1,276,622 + +0.4
1,276,622 + +0.3
1,276,710 + -1.8
1,276,710 + -0.2
1,276,710 + +0.4
1,276,711 - +1.5
1,276,711 - -0.4
1,276,711 - -0.3
1,276,711 - -0.2
1,276,711 - -1.2
1,276,758 + +0.3
1,276,761 + -0.5
1,276,761 + -1.9
1,276,761 + -0.9
1,276,762 - -0.3
1,276,762 - +0.9
1,276,762 - +0.1
1,276,762 - +0.6
1,277,593 + -0.3
1,277,594 - -0.4
1,277,594 - +0.1
1,277,594 - -2.8
1,277,594 - -0.5
1,277,635 - +0.6
1,277,683 + +0.4
1,277,683 + -0.5
1,277,684 - -2.3
1,277,684 - +0.4

Or see this region's nucleotide sequence