Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06150

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06140 and DZA65_RS06145 are separated by 240 nucleotidesDZA65_RS06145 and DZA65_RS06150 are separated by 181 nucleotidesDZA65_RS06150 and DZA65_RS06155 are separated by 74 nucleotides DZA65_RS06140: DZA65_RS06140 - prephenate dehydrogenase, at 1,269,594 to 1,270,127 _RS06140 DZA65_RS06145: DZA65_RS06145 - DUF454 family protein, at 1,270,368 to 1,270,736 _RS06145 DZA65_RS06150: DZA65_RS06150 - adenine phosphoribosyltransferase, at 1,270,918 to 1,271,466 _RS06150 DZA65_RS06155: DZA65_RS06155 - DNA polymerase III subunit gamma/tau, at 1,271,541 to 1,273,553 _RS06155 Position (kb) 1270 1271 1272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1269.936 kb on + strand, within DZA65_RS06140at 1269.936 kb on + strand, within DZA65_RS06140at 1269.936 kb on + strand, within DZA65_RS06140at 1269.936 kb on + strand, within DZA65_RS06140at 1269.936 kb on + strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.937 kb on - strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.940 kb on + strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.941 kb on - strand, within DZA65_RS06140at 1269.958 kb on + strand, within DZA65_RS06140at 1269.958 kb on + strand, within DZA65_RS06140at 1269.958 kb on + strand, within DZA65_RS06140at 1269.958 kb on + strand, within DZA65_RS06140at 1269.958 kb on + strand, within DZA65_RS06140at 1269.959 kb on - strand, within DZA65_RS06140at 1269.959 kb on - strand, within DZA65_RS06140at 1269.959 kb on - strand, within DZA65_RS06140at 1269.962 kb on + strand, within DZA65_RS06140at 1269.962 kb on + strand, within DZA65_RS06140at 1269.962 kb on + strand, within DZA65_RS06140at 1269.962 kb on + strand, within DZA65_RS06140at 1269.962 kb on + strand, within DZA65_RS06140at 1269.962 kb on + strand, within DZA65_RS06140at 1269.963 kb on - strand, within DZA65_RS06140at 1269.963 kb on - strand, within DZA65_RS06140at 1269.963 kb on - strand, within DZA65_RS06140at 1269.963 kb on - strand, within DZA65_RS06140at 1269.982 kb on + strand, within DZA65_RS06140at 1270.003 kb on + strand, within DZA65_RS06140at 1270.082 kb on + strandat 1270.082 kb on + strandat 1270.082 kb on + strandat 1270.083 kb on - strandat 1270.102 kb on - strandat 1270.160 kb on + strandat 1270.170 kb on + strandat 1270.171 kb on - strandat 1270.171 kb on - strandat 1270.171 kb on - strandat 1270.255 kb on + strandat 1270.267 kb on - strandat 1270.267 kb on - strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.271 kb on + strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.272 kb on - strandat 1270.336 kb on + strandat 1270.336 kb on + strandat 1270.371 kb on + strandat 1270.371 kb on + strandat 1270.371 kb on + strandat 1270.372 kb on - strandat 1270.372 kb on - strandat 1270.372 kb on - strandat 1270.509 kb on + strand, within DZA65_RS06145at 1270.522 kb on - strand, within DZA65_RS06145at 1270.617 kb on - strand, within DZA65_RS06145at 1270.700 kb on + strandat 1270.700 kb on + strandat 1270.700 kb on + strandat 1270.700 kb on + strandat 1270.700 kb on + strandat 1270.701 kb on - strandat 1270.701 kb on - strandat 1270.701 kb on - strandat 1270.701 kb on - strandat 1270.701 kb on - strandat 1270.745 kb on - strandat 1270.892 kb on + strandat 1270.902 kb on + strandat 1270.917 kb on + strandat 1270.917 kb on + strandat 1270.918 kb on - strandat 1270.918 kb on - strandat 1270.918 kb on - strandat 1270.956 kb on + strandat 1270.957 kb on - strandat 1270.965 kb on + strandat 1270.965 kb on + strandat 1270.991 kb on + strand, within DZA65_RS06150at 1270.991 kb on + strand, within DZA65_RS06150at 1270.992 kb on - strand, within DZA65_RS06150at 1271.036 kb on - strand, within DZA65_RS06150at 1271.212 kb on + strand, within DZA65_RS06150at 1271.212 kb on + strand, within DZA65_RS06150at 1271.212 kb on + strand, within DZA65_RS06150at 1271.212 kb on + strand, within DZA65_RS06150at 1271.213 kb on - strand, within DZA65_RS06150at 1271.213 kb on - strand, within DZA65_RS06150at 1271.213 kb on - strand, within DZA65_RS06150at 1271.213 kb on - strand, within DZA65_RS06150at 1271.213 kb on - strand, within DZA65_RS06150at 1271.224 kb on + strand, within DZA65_RS06150at 1271.235 kb on + strand, within DZA65_RS06150at 1271.236 kb on - strand, within DZA65_RS06150at 1271.236 kb on - strand, within DZA65_RS06150at 1271.438 kb on - strandat 1271.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,269,936 + DZA65_RS06140 0.64 -0.7
1,269,936 + DZA65_RS06140 0.64 -0.4
1,269,936 + DZA65_RS06140 0.64 -1.3
1,269,936 + DZA65_RS06140 0.64 -0.0
1,269,936 + DZA65_RS06140 0.64 -0.9
1,269,937 - DZA65_RS06140 0.64 -1.0
1,269,937 - DZA65_RS06140 0.64 -0.5
1,269,937 - DZA65_RS06140 0.64 -0.2
1,269,937 - DZA65_RS06140 0.64 +0.2
1,269,937 - DZA65_RS06140 0.64 +0.5
1,269,937 - DZA65_RS06140 0.64 -0.1
1,269,937 - DZA65_RS06140 0.64 -0.9
1,269,937 - DZA65_RS06140 0.64 +0.9
1,269,937 - DZA65_RS06140 0.64 +0.3
1,269,937 - DZA65_RS06140 0.64 +0.1
1,269,937 - DZA65_RS06140 0.64 +1.1
1,269,937 - DZA65_RS06140 0.64 -0.0
1,269,937 - DZA65_RS06140 0.64 -0.1
1,269,940 + DZA65_RS06140 0.65 -0.6
1,269,940 + DZA65_RS06140 0.65 -0.2
1,269,940 + DZA65_RS06140 0.65 +0.4
1,269,940 + DZA65_RS06140 0.65 -1.0
1,269,940 + DZA65_RS06140 0.65 -0.0
1,269,940 + DZA65_RS06140 0.65 -1.2
1,269,940 + DZA65_RS06140 0.65 -0.9
1,269,940 + DZA65_RS06140 0.65 +0.5
1,269,940 + DZA65_RS06140 0.65 -0.3
1,269,940 + DZA65_RS06140 0.65 +0.1
1,269,941 - DZA65_RS06140 0.65 +0.6
1,269,941 - DZA65_RS06140 0.65 -0.1
1,269,941 - DZA65_RS06140 0.65 -2.8
1,269,941 - DZA65_RS06140 0.65 -1.2
1,269,941 - DZA65_RS06140 0.65 +0.7
1,269,941 - DZA65_RS06140 0.65 +0.4
1,269,941 - DZA65_RS06140 0.65 +0.4
1,269,941 - DZA65_RS06140 0.65 -0.9
1,269,941 - DZA65_RS06140 0.65 -1.2
1,269,941 - DZA65_RS06140 0.65 +0.3
1,269,958 + DZA65_RS06140 0.68 +0.1
1,269,958 + DZA65_RS06140 0.68 +0.6
1,269,958 + DZA65_RS06140 0.68 +0.7
1,269,958 + DZA65_RS06140 0.68 +0.8
1,269,958 + DZA65_RS06140 0.68 +0.6
1,269,959 - DZA65_RS06140 0.68 -1.8
1,269,959 - DZA65_RS06140 0.68 -1.6
1,269,959 - DZA65_RS06140 0.68 +0.4
1,269,962 + DZA65_RS06140 0.69 +2.0
1,269,962 + DZA65_RS06140 0.69 +0.1
1,269,962 + DZA65_RS06140 0.69 -1.8
1,269,962 + DZA65_RS06140 0.69 -1.2
1,269,962 + DZA65_RS06140 0.69 -0.8
1,269,962 + DZA65_RS06140 0.69 -0.6
1,269,963 - DZA65_RS06140 0.69 +0.6
1,269,963 - DZA65_RS06140 0.69 +0.4
1,269,963 - DZA65_RS06140 0.69 +1.3
1,269,963 - DZA65_RS06140 0.69 +0.1
1,269,982 + DZA65_RS06140 0.73 +0.7
1,270,003 + DZA65_RS06140 0.77 +0.1
1,270,082 + +1.2
1,270,082 + +0.2
1,270,082 + -0.4
1,270,083 - +0.0
1,270,102 - +1.1
1,270,160 + -0.5
1,270,170 + -0.3
1,270,171 - -0.0
1,270,171 - +0.0
1,270,171 - -0.2
1,270,255 + -0.6
1,270,267 - +0.1
1,270,267 - +0.3
1,270,271 + +0.2
1,270,271 + +0.1
1,270,271 + +0.2
1,270,271 + +0.3
1,270,271 + -1.0
1,270,271 + -1.0
1,270,271 + +0.9
1,270,271 + -1.3
1,270,271 + -0.3
1,270,271 + -1.2
1,270,272 - -1.2
1,270,272 - +1.4
1,270,272 - +2.1
1,270,272 - -0.3
1,270,272 - +0.4
1,270,272 - +0.0
1,270,272 - +0.6
1,270,272 - -0.1
1,270,272 - +0.4
1,270,336 + +1.5
1,270,336 + -1.1
1,270,371 + +0.3
1,270,371 + -0.2
1,270,371 + +0.3
1,270,372 - +0.7
1,270,372 - +0.2
1,270,372 - +0.3
1,270,509 + DZA65_RS06145 0.38 +1.0
1,270,522 - DZA65_RS06145 0.42 +0.2
1,270,617 - DZA65_RS06145 0.67 -2.2
1,270,700 + +1.1
1,270,700 + -1.0
1,270,700 + +0.8
1,270,700 + +0.4
1,270,700 + -0.6
1,270,701 - +0.7
1,270,701 - +0.2
1,270,701 - +0.3
1,270,701 - +0.2
1,270,701 - +1.4
1,270,745 - -1.4
1,270,892 + -0.3
1,270,902 + -1.0
1,270,917 + -1.5
1,270,917 + -0.7
1,270,918 - -1.2
1,270,918 - -0.2
1,270,918 - +1.1
1,270,956 + +1.4
1,270,957 - -2.2
1,270,965 + -2.6
1,270,965 + -0.6
1,270,991 + DZA65_RS06150 0.13 -1.0
1,270,991 + DZA65_RS06150 0.13 +1.2
1,270,992 - DZA65_RS06150 0.13 -2.3
1,271,036 - DZA65_RS06150 0.21 -1.6
1,271,212 + DZA65_RS06150 0.54 -2.6
1,271,212 + DZA65_RS06150 0.54 +0.2
1,271,212 + DZA65_RS06150 0.54 +0.8
1,271,212 + DZA65_RS06150 0.54 +0.1
1,271,213 - DZA65_RS06150 0.54 -1.0
1,271,213 - DZA65_RS06150 0.54 -0.1
1,271,213 - DZA65_RS06150 0.54 -2.8
1,271,213 - DZA65_RS06150 0.54 -1.2
1,271,213 - DZA65_RS06150 0.54 -0.3
1,271,224 + DZA65_RS06150 0.56 +1.1
1,271,235 + DZA65_RS06150 0.58 -1.2
1,271,236 - DZA65_RS06150 0.58 -0.0
1,271,236 - DZA65_RS06150 0.58 +0.0
1,271,438 - +0.8
1,271,502 + -1.4

Or see this region's nucleotide sequence