Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04485 and DZA65_RS04490 overlap by 8 nucleotides DZA65_RS04490 and DZA65_RS04495 overlap by 11 nucleotides
DZA65_RS04485: DZA65_RS04485 - substrate-binding domain-containing protein, at 935,148 to 936,134
_RS04485
DZA65_RS04490: DZA65_RS04490 - ribonuclease Z, at 936,127 to 936,894
_RS04490
DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933
_RS04495
Position (kb) 936
937 Strain fitness (log2 ratio) -2
-1
0
1
2 at 935.149 kb on + strand at 935.150 kb on - strand at 935.171 kb on + strand at 935.171 kb on + strand at 935.172 kb on - strand at 935.172 kb on - strand at 935.464 kb on + strand, within DZA65_RS04485 at 935.574 kb on - strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.329 kb on + strand, within DZA65_RS04490 at 936.431 kb on + strand, within DZA65_RS04490 at 936.432 kb on - strand, within DZA65_RS04490 at 936.461 kb on + strand, within DZA65_RS04490 at 936.461 kb on + strand at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.861 kb on - strand at 937.074 kb on + strand, within DZA65_RS04495 at 937.108 kb on + strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.399 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.621 kb on + strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.675 kb on - strand, within DZA65_RS04495 at 937.683 kb on + strand, within DZA65_RS04495 at 937.684 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 935,149 + -0.1 935,150 - -0.6 935,171 + +0.2 935,171 + +0.1 935,172 - +1.7 935,172 - -0.7 935,464 + DZA65_RS04485 0.32 -1.2 935,574 - DZA65_RS04485 0.43 -0.6 935,575 + DZA65_RS04485 0.43 -0.9 935,575 + DZA65_RS04485 0.43 -0.6 935,575 + DZA65_RS04485 0.43 -0.6 935,575 + DZA65_RS04485 0.43 -1.2 935,575 + DZA65_RS04485 0.43 +0.2 935,575 + DZA65_RS04485 0.43 -0.6 935,576 - DZA65_RS04485 0.43 -1.9 935,576 - DZA65_RS04485 0.43 +0.4 935,576 - DZA65_RS04485 0.43 +1.2 935,576 - DZA65_RS04485 0.43 -0.1 935,576 - DZA65_RS04485 0.43 -0.5 935,576 - DZA65_RS04485 0.43 -0.9 936,058 + -1.6 936,058 + -0.3 936,058 + -0.9 936,058 + +0.7 936,058 + +0.2 936,058 + -1.0 936,059 - +0.6 936,059 - -0.1 936,059 - -0.4 936,059 - -0.2 936,059 - -1.6 936,128 + +0.3 936,128 + -1.2 936,128 + +1.0 936,266 + DZA65_RS04490 0.18 +1.2 936,266 + DZA65_RS04490 0.18 -0.3 936,266 + DZA65_RS04490 0.18 -0.9 936,266 + DZA65_RS04490 0.18 +0.0 936,266 + DZA65_RS04490 0.18 -0.4 936,266 + DZA65_RS04490 0.18 -0.1 936,266 + DZA65_RS04490 0.18 -0.9 936,267 - DZA65_RS04490 0.18 -2.0 936,267 - DZA65_RS04490 0.18 +0.8 936,267 - DZA65_RS04490 0.18 -0.5 936,267 - DZA65_RS04490 0.18 -0.6 936,329 + DZA65_RS04490 0.26 +0.4 936,431 + DZA65_RS04490 0.40 -0.6 936,432 - DZA65_RS04490 0.40 +0.4 936,461 + DZA65_RS04490 0.43 -2.1 936,461 + +2.0 936,462 - DZA65_RS04490 0.44 -0.7 936,462 - DZA65_RS04490 0.44 +2.1 936,462 - DZA65_RS04490 0.44 -0.4 936,552 + DZA65_RS04490 0.55 -1.2 936,552 + DZA65_RS04490 0.55 -1.0 936,723 + DZA65_RS04490 0.78 +0.0 936,723 + DZA65_RS04490 0.78 +1.2 936,723 + DZA65_RS04490 0.78 -0.3 936,724 - DZA65_RS04490 0.78 +0.2 936,724 - DZA65_RS04490 0.78 +1.1 936,728 + DZA65_RS04490 0.78 -0.3 936,728 + DZA65_RS04490 0.78 -0.4 936,728 + DZA65_RS04490 0.78 -0.2 936,728 + DZA65_RS04490 0.78 +1.0 936,728 + DZA65_RS04490 0.78 +0.4 936,728 + DZA65_RS04490 0.78 -0.4 936,728 + DZA65_RS04490 0.78 -0.8 936,728 + DZA65_RS04490 0.78 -0.5 936,728 + DZA65_RS04490 0.78 +0.7 936,728 + DZA65_RS04490 0.78 -0.5 936,728 + DZA65_RS04490 0.78 -1.4 936,728 + DZA65_RS04490 0.78 +0.6 936,728 + DZA65_RS04490 0.78 -0.5 936,728 + DZA65_RS04490 0.78 -0.5 936,728 + DZA65_RS04490 0.78 -1.0 936,728 + DZA65_RS04490 0.78 -1.6 936,728 + DZA65_RS04490 0.78 -0.6 936,728 + DZA65_RS04490 0.78 -0.2 936,729 - +1.8 936,729 - DZA65_RS04490 0.78 +0.4 936,729 - DZA65_RS04490 0.78 -1.0 936,729 - DZA65_RS04490 0.78 -0.6 936,729 - DZA65_RS04490 0.78 -1.6 936,729 - DZA65_RS04490 0.78 +0.2 936,729 - -1.2 936,729 - DZA65_RS04490 0.78 +0.2 936,729 - DZA65_RS04490 0.78 -0.2 936,729 - DZA65_RS04490 0.78 -0.7 936,860 + +1.4 936,860 + +0.9 936,860 + +1.1 936,860 + -1.5 936,861 - -0.5 937,074 + DZA65_RS04495 0.18 -0.3 937,108 + DZA65_RS04495 0.21 +1.4 937,109 - DZA65_RS04495 0.21 -0.1 937,109 - DZA65_RS04495 0.21 -0.1 937,109 - DZA65_RS04495 0.21 +0.6 937,109 - DZA65_RS04495 0.21 -0.6 937,344 + DZA65_RS04495 0.44 +1.2 937,344 + DZA65_RS04495 0.44 -0.3 937,344 + DZA65_RS04495 0.44 -0.5 937,344 + DZA65_RS04495 0.44 +0.3 937,345 - DZA65_RS04495 0.44 -0.6 937,345 - DZA65_RS04495 0.44 -0.9 937,345 - DZA65_RS04495 0.44 +1.2 937,345 - DZA65_RS04495 0.44 +0.7 937,399 + DZA65_RS04495 0.49 +0.8 937,443 + DZA65_RS04495 0.53 -0.5 937,443 + DZA65_RS04495 0.53 -0.1 937,443 + DZA65_RS04495 0.53 +0.4 937,443 + DZA65_RS04495 0.53 -2.6 937,444 - DZA65_RS04495 0.53 +0.3 937,444 - DZA65_RS04495 0.53 +0.8 937,444 - DZA65_RS04495 0.53 +0.7 937,444 - DZA65_RS04495 0.53 +0.8 937,621 + DZA65_RS04495 0.70 -0.8 937,622 - DZA65_RS04495 0.70 -0.1 937,622 - DZA65_RS04495 0.70 +1.6 937,675 - DZA65_RS04495 0.75 -0.3 937,683 + DZA65_RS04495 0.76 +1.3 937,684 - DZA65_RS04495 0.76 +0.7 937,736 - DZA65_RS04495 0.81 +2.2 937,736 - DZA65_RS04495 0.81 -1.9
Or see this region's nucleotide sequence