Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04335 and DZA65_RS04345 are separated by 581 nucleotides DZA65_RS04345 and DZA65_RS04350 are separated by 307 nucleotides DZA65_RS04350 and DZA65_RS04355 are separated by 41 nucleotides
DZA65_RS04335: DZA65_RS04335 - HAMP domain-containing protein, at 905,390 to 906,808
_RS04335
DZA65_RS04345: DZA65_RS04345 - helix-turn-helix transcriptional regulator, at 907,390 to 907,953
_RS04345
DZA65_RS04350: DZA65_RS04350 - PTS glucose transporter subunit IIA, at 908,261 to 908,770
_RS04350
DZA65_RS04355: DZA65_RS04355 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 908,812 to 910,539
_RS04355
Position (kb) 907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 906.439 kb on + strand, within DZA65_RS04335 at 906.439 kb on + strand, within DZA65_RS04335 at 906.440 kb on - strand, within DZA65_RS04335 at 906.440 kb on - strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.461 kb on + strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.462 kb on - strand, within DZA65_RS04335 at 906.589 kb on + strand, within DZA65_RS04335 at 906.590 kb on - strand, within DZA65_RS04335 at 906.790 kb on + strand at 906.790 kb on + strand at 906.790 kb on + strand at 906.790 kb on + strand at 906.790 kb on + strand at 906.791 kb on - strand at 906.791 kb on - strand at 906.819 kb on + strand at 906.821 kb on + strand at 906.821 kb on + strand at 906.821 kb on + strand at 906.821 kb on + strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.822 kb on - strand at 906.842 kb on + strand at 906.843 kb on - strand at 906.898 kb on + strand at 906.912 kb on + strand at 906.912 kb on + strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.913 kb on - strand at 906.926 kb on + strand at 906.927 kb on - strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.940 kb on + strand at 906.941 kb on - strand at 906.941 kb on - strand at 906.941 kb on - strand at 906.941 kb on - strand at 906.954 kb on + strand at 906.954 kb on + strand at 906.954 kb on + strand at 906.955 kb on - strand at 906.955 kb on - strand at 906.955 kb on - strand at 906.955 kb on - strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.968 kb on + strand at 906.969 kb on - strand at 906.969 kb on - strand at 906.969 kb on - strand at 906.969 kb on - strand at 906.982 kb on + strand at 906.982 kb on + strand at 906.982 kb on + strand at 906.982 kb on - strand at 906.983 kb on - strand at 906.983 kb on - strand at 906.983 kb on - strand at 906.983 kb on - strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.984 kb on + strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.985 kb on - strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.987 kb on + strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.988 kb on - strand at 906.996 kb on + strand at 906.997 kb on - strand at 906.997 kb on - strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.998 kb on + strand at 906.999 kb on - strand at 906.999 kb on - strand at 906.999 kb on - strand at 906.999 kb on - strand at 906.999 kb on - strand at 907.064 kb on + strand at 907.206 kb on + strand at 907.207 kb on - strand at 907.236 kb on - strand at 907.236 kb on - strand at 907.236 kb on - strand at 907.274 kb on + strand at 907.274 kb on + strand at 907.274 kb on + strand at 907.274 kb on + strand at 907.275 kb on - strand at 907.275 kb on - strand at 907.275 kb on - strand at 907.311 kb on + strand at 907.311 kb on + strand at 907.312 kb on - strand at 907.325 kb on + strand at 907.340 kb on + strand at 907.341 kb on - strand at 907.341 kb on - strand at 907.341 kb on - strand at 907.342 kb on + strand at 907.342 kb on + strand at 907.342 kb on + strand at 907.342 kb on + strand at 907.343 kb on - strand at 907.343 kb on - strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.345 kb on + strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.346 kb on - strand at 907.383 kb on - strand at 907.389 kb on + strand at 907.389 kb on + strand at 907.389 kb on + strand at 907.390 kb on - strand at 907.390 kb on - strand at 907.390 kb on - strand at 907.600 kb on + strand, within DZA65_RS04345 at 907.627 kb on + strand, within DZA65_RS04345 at 907.628 kb on - strand, within DZA65_RS04345 at 907.697 kb on + strand, within DZA65_RS04345 at 907.697 kb on + strand, within DZA65_RS04345 at 907.697 kb on + strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.698 kb on - strand, within DZA65_RS04345 at 907.703 kb on + strand, within DZA65_RS04345 at 907.761 kb on - strand, within DZA65_RS04345 at 907.812 kb on + strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.863 kb on - strand, within DZA65_RS04345 at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.971 kb on + strand at 907.971 kb on + strand at 907.972 kb on - strand at 907.972 kb on - strand at 907.974 kb on + strand at 907.974 kb on + strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.983 kb on - strand at 907.983 kb on - strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.121 kb on + strand at 908.121 kb on + strand at 908.122 kb on - strand at 908.181 kb on + strand at 908.181 kb on + strand at 908.182 kb on - strand at 908.198 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.564 kb on - strand, within DZA65_RS04350 at 908.614 kb on + strand, within DZA65_RS04350 at 908.648 kb on + strand, within DZA65_RS04350 at 908.782 kb on - strand at 908.792 kb on - strand at 908.845 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.881 kb on + strand at 908.915 kb on + strand at 908.915 kb on + strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 906,439 + DZA65_RS04335 0.74 +1.0 906,439 + DZA65_RS04335 0.74 +0.1 906,440 - DZA65_RS04335 0.74 -0.3 906,440 - DZA65_RS04335 0.74 -0.2 906,461 + DZA65_RS04335 0.75 -1.7 906,461 + DZA65_RS04335 0.75 -1.0 906,461 + DZA65_RS04335 0.75 -1.4 906,461 + DZA65_RS04335 0.75 +0.4 906,461 + DZA65_RS04335 0.75 -1.6 906,461 + DZA65_RS04335 0.75 -0.2 906,462 - DZA65_RS04335 0.76 +1.1 906,462 - DZA65_RS04335 0.76 -0.9 906,462 - DZA65_RS04335 0.76 +0.2 906,462 - DZA65_RS04335 0.76 -0.7 906,462 - DZA65_RS04335 0.76 +0.4 906,589 + DZA65_RS04335 0.84 -1.3 906,590 - DZA65_RS04335 0.85 +1.0 906,790 + -0.8 906,790 + -1.0 906,790 + +1.3 906,790 + -0.2 906,790 + -0.8 906,791 - -0.6 906,791 - +0.4 906,819 + +0.8 906,821 + -1.4 906,821 + +0.8 906,821 + +0.2 906,821 + -0.8 906,822 - -0.1 906,822 - +0.5 906,822 - +0.4 906,822 - -1.1 906,822 - -0.4 906,822 - -0.6 906,822 - -0.2 906,842 + -0.0 906,843 - +0.2 906,898 + -0.2 906,912 + +0.1 906,912 + -0.1 906,913 - -0.6 906,913 - -1.9 906,913 - -0.1 906,913 - +0.4 906,913 - +0.2 906,926 + -0.3 906,927 - -0.9 906,940 + +0.6 906,940 + +0.1 906,940 + -0.0 906,940 + -0.2 906,940 + +0.4 906,940 + +0.4 906,941 - +0.8 906,941 - -0.3 906,941 - +0.1 906,941 - +0.0 906,954 + -2.7 906,954 + -1.4 906,954 + -0.3 906,955 - +0.1 906,955 - -0.8 906,955 - +1.3 906,955 - +0.8 906,968 + -2.6 906,968 + -0.5 906,968 + -1.6 906,968 + -0.0 906,968 + +1.7 906,969 - +2.0 906,969 - +0.8 906,969 - +0.2 906,969 - +1.2 906,982 + -0.2 906,982 + +0.2 906,982 + -0.7 906,982 - -0.5 906,983 - +0.6 906,983 - -1.8 906,983 - +0.3 906,983 - +0.4 906,984 + -0.6 906,984 + +1.3 906,984 + +1.0 906,984 + -0.5 906,984 + -0.1 906,984 + +1.0 906,984 + +1.0 906,984 + -0.6 906,984 + -1.0 906,984 + +0.8 906,984 + +0.3 906,984 + -1.9 906,985 - +0.1 906,985 - +2.0 906,985 - +0.9 906,985 - -0.1 906,985 - -0.1 906,985 - -0.6 906,985 - -0.1 906,985 - +0.4 906,985 - +0.8 906,985 - -0.6 906,985 - +0.1 906,985 - -0.5 906,987 + -1.6 906,987 + -0.7 906,987 + +0.4 906,987 + +0.6 906,987 + +0.4 906,987 + -0.1 906,987 + -0.1 906,987 + -0.0 906,987 + +0.0 906,987 + -1.2 906,987 + -2.7 906,988 - -0.3 906,988 - +0.8 906,988 - +0.7 906,988 - +0.7 906,988 - +0.8 906,988 - -0.6 906,988 - -0.3 906,988 - +0.1 906,996 + -0.1 906,997 - +0.9 906,997 - -0.1 906,998 + +0.3 906,998 + -0.5 906,998 + -0.3 906,998 + +0.1 906,998 + +0.3 906,998 + +1.1 906,999 - +0.1 906,999 - +0.4 906,999 - +0.1 906,999 - -0.6 906,999 - +0.5 907,064 + +0.1 907,206 + +0.6 907,207 - +1.1 907,236 - -0.4 907,236 - -1.2 907,236 - +1.0 907,274 + -0.6 907,274 + +0.7 907,274 + -1.2 907,274 + +0.1 907,275 - -0.4 907,275 - -0.8 907,275 - -0.8 907,311 + -0.5 907,311 + -1.9 907,312 - -0.3 907,325 + +0.4 907,340 + +1.0 907,341 - -0.0 907,341 - +0.4 907,341 - -1.2 907,342 + +1.7 907,342 + -1.6 907,342 + -0.7 907,342 + -0.0 907,343 - +0.0 907,343 - -1.2 907,345 + +0.3 907,345 + +0.1 907,345 + -0.8 907,345 + +1.4 907,345 + +0.4 907,345 + -0.3 907,345 + +1.4 907,345 + +0.1 907,345 + -0.2 907,346 - +0.3 907,346 - +0.1 907,346 - +0.1 907,346 - -0.0 907,346 - +0.8 907,346 - -0.4 907,346 - +0.4 907,346 - +0.4 907,346 - -0.8 907,346 - -0.4 907,383 - +2.2 907,389 + -0.6 907,389 + +1.3 907,389 + -0.8 907,390 - -0.6 907,390 - +0.3 907,390 - -0.6 907,600 + DZA65_RS04345 0.37 +0.2 907,627 + DZA65_RS04345 0.42 -0.4 907,628 - DZA65_RS04345 0.42 -1.0 907,697 + DZA65_RS04345 0.54 -0.6 907,697 + DZA65_RS04345 0.54 -1.6 907,697 + DZA65_RS04345 0.54 +2.0 907,698 - DZA65_RS04345 0.55 -0.1 907,698 - DZA65_RS04345 0.55 -0.2 907,698 - DZA65_RS04345 0.55 +0.1 907,698 - DZA65_RS04345 0.55 -0.2 907,703 + DZA65_RS04345 0.55 -0.3 907,761 - DZA65_RS04345 0.66 +0.9 907,812 + DZA65_RS04345 0.75 -0.7 907,813 - DZA65_RS04345 0.75 -2.7 907,813 - DZA65_RS04345 0.75 -1.3 907,813 - DZA65_RS04345 0.75 +0.1 907,863 - DZA65_RS04345 0.84 -0.7 907,944 + -1.6 907,944 + +0.6 907,944 + -0.1 907,944 + +0.7 907,944 + -1.2 907,944 + -1.4 907,944 + +0.0 907,944 + +0.7 907,944 + -0.5 907,945 - +0.6 907,945 - -0.6 907,945 - +0.1 907,945 - +0.9 907,945 - -0.9 907,945 - -0.5 907,945 - -0.6 907,971 + +0.1 907,971 + -0.7 907,972 - +0.4 907,972 - -0.7 907,974 + -0.1 907,974 + -1.4 907,975 - -0.3 907,975 - +0.8 907,975 - -0.6 907,975 - +0.7 907,975 - -0.6 907,983 - +1.4 907,983 - -0.2 908,028 + +0.1 908,028 + -0.5 908,028 + +0.4 908,028 + +1.0 908,029 - -1.4 908,029 - -0.6 908,029 - +0.0 908,032 + +0.8 908,032 + -1.0 908,032 + -1.3 908,032 + +1.1 908,032 + +0.4 908,032 + -1.1 908,032 + -0.6 908,032 + +0.1 908,032 + -0.4 908,032 + +0.1 908,032 + +0.2 908,032 + -1.1 908,032 + -0.5 908,032 + +1.8 908,032 + -0.2 908,032 + +0.2 908,032 + -0.1 908,032 + -0.2 908,032 + +0.2 908,032 + -2.9 908,032 + +1.8 908,032 + +0.7 908,032 + +0.2 908,032 + +0.2 908,033 - -0.8 908,033 - -0.6 908,033 - +1.2 908,033 - +1.3 908,033 - -0.5 908,033 - -0.6 908,033 - -0.4 908,033 - +0.1 908,033 - -0.7 908,033 - +0.6 908,033 - -0.0 908,033 - +0.2 908,033 - +0.8 908,036 + +0.3 908,036 + +1.4 908,036 + -1.2 908,036 + +0.3 908,036 + +0.1 908,036 + +0.3 908,036 + -0.0 908,036 + +0.5 908,036 + +1.1 908,036 + -2.2 908,036 + +0.2 908,036 + -0.6 908,036 + +2.4 908,037 - -1.6 908,037 - +1.7 908,037 - -1.0 908,037 - +1.3 908,037 - -1.7 908,037 - -0.1 908,040 + +0.4 908,040 + +1.0 908,040 + -0.9 908,040 + -0.1 908,040 + +0.8 908,040 + -0.5 908,040 + +0.1 908,040 + +1.3 908,040 + +0.1 908,040 + +0.4 908,040 + +0.4 908,040 + +0.9 908,041 - +0.8 908,041 - +0.3 908,041 - -0.3 908,041 - +0.3 908,041 - -1.3 908,041 - -0.6 908,041 - -1.0 908,041 - -1.9 908,044 + +1.2 908,044 + -0.1 908,044 + +0.5 908,044 + +3.0 908,045 - -1.4 908,045 - -0.8 908,045 - +0.7 908,045 - +0.6 908,121 + -1.7 908,121 + -0.7 908,122 - -1.0 908,181 + -1.6 908,181 + -0.1 908,182 - +0.0 908,198 + -0.6 908,208 + +0.0 908,208 + +0.1 908,208 + +0.3 908,262 + +1.0 908,262 + +1.2 908,262 + +0.4 908,564 - DZA65_RS04350 0.59 +0.3 908,614 + DZA65_RS04350 0.69 +0.4 908,648 + DZA65_RS04350 0.76 +0.7 908,782 - -1.0 908,792 - +0.4 908,845 + +0.2 908,857 + +1.3 908,857 + -0.4 908,857 + -0.5 908,857 + -1.3 908,857 + -0.4 908,857 + -0.6 908,858 - -0.2 908,858 - +0.4 908,858 - +0.4 908,858 - -1.2 908,858 - -0.2 908,881 + +0.4 908,915 + -0.3 908,915 + -1.9 908,916 - -2.2 908,916 - -0.2 908,916 - -0.8 908,916 - -0.3
Or see this region's nucleotide sequence