Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04100 and DZA65_RS04105 overlap by 4 nucleotides DZA65_RS04105 and DZA65_RS04110 overlap by 4 nucleotides DZA65_RS04110 and DZA65_RS04115 are separated by 2 nucleotides
DZA65_RS04100: DZA65_RS04100 - head completion/stabilization protein, at 865,797 to 866,249
_RS04100
DZA65_RS04105: DZA65_RS04105 - phage tail protein, at 866,246 to 866,743
_RS04105
DZA65_RS04110: DZA65_RS04110 - hypothetical protein, at 866,740 to 867,444
_RS04110
DZA65_RS04115: DZA65_RS04115 - DUF2586 domain-containing protein, at 867,447 to 868,562
_RS04115
Position (kb) 866
867
868 Strain fitness (log2 ratio) -2
-1
0
1
2 at 865.785 kb on + strand at 865.822 kb on - strand at 865.834 kb on + strand at 865.834 kb on + strand at 865.834 kb on + strand at 865.835 kb on - strand at 865.835 kb on - strand at 866.006 kb on + strand, within DZA65_RS04100 at 866.007 kb on - strand, within DZA65_RS04100 at 866.245 kb on + strand at 866.245 kb on + strand at 866.246 kb on - strand at 866.246 kb on - strand at 866.246 kb on - strand at 866.246 kb on - strand at 866.246 kb on - strand at 866.246 kb on - strand at 866.466 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.501 kb on + strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.502 kb on - strand, within DZA65_RS04105 at 866.783 kb on + strand at 866.783 kb on + strand at 866.783 kb on + strand at 866.783 kb on + strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.784 kb on - strand at 866.834 kb on + strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 866.835 kb on - strand, within DZA65_RS04110 at 867.016 kb on + strand, within DZA65_RS04110 at 867.017 kb on - strand, within DZA65_RS04110 at 867.021 kb on - strand, within DZA65_RS04110 at 867.021 kb on - strand at 867.021 kb on - strand, within DZA65_RS04110 at 867.076 kb on + strand, within DZA65_RS04110 at 867.076 kb on + strand, within DZA65_RS04110 at 867.275 kb on + strand, within DZA65_RS04110 at 867.275 kb on + strand, within DZA65_RS04110 at 867.276 kb on - strand, within DZA65_RS04110 at 867.285 kb on + strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.286 kb on - strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.323 kb on + strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.324 kb on - strand, within DZA65_RS04110 at 867.369 kb on + strand, within DZA65_RS04110 at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.487 kb on + strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.488 kb on - strand at 867.528 kb on - strand at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.891 kb on + strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.892 kb on - strand, within DZA65_RS04115 at 867.895 kb on + strand, within DZA65_RS04115 at 867.895 kb on + strand, within DZA65_RS04115 at 867.909 kb on - strand, within DZA65_RS04115 at 867.913 kb on + strand, within DZA65_RS04115 at 868.051 kb on + strand, within DZA65_RS04115 at 868.076 kb on - strand, within DZA65_RS04115 at 868.076 kb on - strand, within DZA65_RS04115 at 868.141 kb on - strand, within DZA65_RS04115 at 868.158 kb on + strand, within DZA65_RS04115 at 868.168 kb on - strand, within DZA65_RS04115 at 868.176 kb on + strand, within DZA65_RS04115 at 868.177 kb on - strand, within DZA65_RS04115 at 868.177 kb on - strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.179 kb on + strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.180 kb on - strand, within DZA65_RS04115 at 868.222 kb on - strand, within DZA65_RS04115 at 868.316 kb on + strand, within DZA65_RS04115 at 868.317 kb on - strand, within DZA65_RS04115 at 868.317 kb on - strand, within DZA65_RS04115 at 868.347 kb on + strand, within DZA65_RS04115 at 868.348 kb on - strand, within DZA65_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 865,785 + -0.2 865,822 - -0.3 865,834 + -1.6 865,834 + -1.9 865,834 + -0.5 865,835 - -0.2 865,835 - +0.2 866,006 + DZA65_RS04100 0.46 -0.3 866,007 - DZA65_RS04100 0.46 +0.4 866,245 + -1.0 866,245 + +0.4 866,246 - -0.8 866,246 - +0.7 866,246 - -0.2 866,246 - -1.6 866,246 - +0.9 866,246 - -1.9 866,466 + DZA65_RS04105 0.44 +0.3 866,501 + DZA65_RS04105 0.51 -0.6 866,501 + DZA65_RS04105 0.51 -0.8 866,501 + DZA65_RS04105 0.51 -0.2 866,502 - DZA65_RS04105 0.51 +0.3 866,502 - DZA65_RS04105 0.51 -0.6 866,502 - DZA65_RS04105 0.51 +0.4 866,502 - DZA65_RS04105 0.51 -2.1 866,502 - DZA65_RS04105 0.51 +0.6 866,502 - DZA65_RS04105 0.51 -0.3 866,783 + -0.0 866,783 + -0.1 866,783 + +0.2 866,783 + -0.1 866,784 - +1.4 866,784 - +0.4 866,784 - -0.2 866,784 - +0.7 866,784 - +1.1 866,834 + DZA65_RS04110 0.13 -0.8 866,835 - DZA65_RS04110 0.13 +1.4 866,835 - DZA65_RS04110 0.13 -0.7 866,835 - DZA65_RS04110 0.13 -0.1 867,016 + DZA65_RS04110 0.39 -0.4 867,017 - DZA65_RS04110 0.39 -0.8 867,021 - DZA65_RS04110 0.40 -0.7 867,021 - -0.6 867,021 - DZA65_RS04110 0.40 -0.9 867,076 + DZA65_RS04110 0.48 -0.2 867,076 + DZA65_RS04110 0.48 +1.0 867,275 + DZA65_RS04110 0.76 +2.0 867,275 + DZA65_RS04110 0.76 -0.1 867,276 - DZA65_RS04110 0.76 -0.7 867,285 + DZA65_RS04110 0.77 -1.6 867,286 - DZA65_RS04110 0.77 -0.4 867,286 - DZA65_RS04110 0.77 -0.3 867,286 - DZA65_RS04110 0.77 +0.7 867,286 - DZA65_RS04110 0.77 -0.9 867,286 - DZA65_RS04110 0.77 -0.8 867,323 + DZA65_RS04110 0.83 -0.3 867,323 + DZA65_RS04110 0.83 +0.4 867,323 + DZA65_RS04110 0.83 -1.6 867,323 + DZA65_RS04110 0.83 -0.0 867,324 - DZA65_RS04110 0.83 -0.1 867,324 - DZA65_RS04110 0.83 -0.2 867,324 - DZA65_RS04110 0.83 -0.5 867,324 - DZA65_RS04110 0.83 +0.9 867,324 - DZA65_RS04110 0.83 -1.6 867,324 - DZA65_RS04110 0.83 +0.4 867,324 - DZA65_RS04110 0.83 -1.1 867,324 - DZA65_RS04110 0.83 +0.4 867,369 + DZA65_RS04110 0.89 -0.6 867,487 + -0.2 867,487 + -0.2 867,487 + -0.9 867,487 + -1.6 867,487 + -0.0 867,488 - -0.6 867,488 - +0.4 867,488 - +0.5 867,488 - -0.9 867,488 - +0.4 867,488 - +0.1 867,488 - -0.1 867,528 - +1.0 867,891 + DZA65_RS04115 0.40 -0.1 867,891 + DZA65_RS04115 0.40 -0.5 867,891 + DZA65_RS04115 0.40 +0.0 867,891 + DZA65_RS04115 0.40 -2.4 867,892 - DZA65_RS04115 0.40 -0.8 867,892 - DZA65_RS04115 0.40 +0.9 867,892 - DZA65_RS04115 0.40 +0.1 867,892 - DZA65_RS04115 0.40 -0.6 867,892 - DZA65_RS04115 0.40 -2.1 867,892 - DZA65_RS04115 0.40 +0.3 867,895 + DZA65_RS04115 0.40 +0.1 867,895 + DZA65_RS04115 0.40 -0.8 867,909 - DZA65_RS04115 0.41 -1.6 867,913 + DZA65_RS04115 0.42 +0.7 868,051 + DZA65_RS04115 0.54 -0.6 868,076 - DZA65_RS04115 0.56 +2.6 868,076 - DZA65_RS04115 0.56 -1.9 868,141 - DZA65_RS04115 0.62 -0.6 868,158 + DZA65_RS04115 0.64 +0.8 868,168 - DZA65_RS04115 0.65 -1.0 868,176 + DZA65_RS04115 0.65 -0.2 868,177 - DZA65_RS04115 0.65 -0.9 868,177 - DZA65_RS04115 0.65 -0.4 868,179 + DZA65_RS04115 0.66 +1.6 868,179 + DZA65_RS04115 0.66 -0.8 868,179 + DZA65_RS04115 0.66 +0.4 868,180 - DZA65_RS04115 0.66 +1.0 868,180 - DZA65_RS04115 0.66 +1.8 868,180 - DZA65_RS04115 0.66 +0.9 868,180 - DZA65_RS04115 0.66 -0.6 868,222 - DZA65_RS04115 0.69 -0.4 868,316 + DZA65_RS04115 0.78 +0.7 868,317 - DZA65_RS04115 0.78 +0.2 868,317 - DZA65_RS04115 0.78 +0.6 868,347 + DZA65_RS04115 0.81 +0.7 868,348 - DZA65_RS04115 0.81 +0.4
Or see this region's nucleotide sequence