Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04055 and DZA65_RS04060 are separated by 299 nucleotides DZA65_RS04060 and DZA65_RS04065 are separated by 84 nucleotides
DZA65_RS04055: DZA65_RS04055 - replication endonuclease, at 854,554 to 856,608
_RS04055
DZA65_RS04060: DZA65_RS04060 - hypothetical protein, at 856,908 to 858,428
_RS04060
DZA65_RS04065: DZA65_RS04065 - DNA adenine methylase, at 858,513 to 859,373
_RS04065
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 855.922 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.148 kb on - strand, within DZA65_RS04055 at 856.148 kb on - strand, within DZA65_RS04055 at 856.148 kb on - strand, within DZA65_RS04055 at 856.207 kb on + strand, within DZA65_RS04055 at 856.207 kb on + strand, within DZA65_RS04055 at 856.207 kb on + strand, within DZA65_RS04055 at 856.208 kb on - strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.268 kb on - strand, within DZA65_RS04055 at 856.268 kb on - strand, within DZA65_RS04055 at 856.268 kb on - strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.402 kb on - strand, within DZA65_RS04055 at 856.402 kb on - strand, within DZA65_RS04055 at 856.402 kb on - strand, within DZA65_RS04055 at 856.407 kb on + strand at 856.408 kb on - strand at 856.408 kb on - strand at 856.448 kb on + strand at 856.559 kb on + strand at 856.559 kb on + strand at 856.560 kb on - strand at 856.560 kb on - strand at 856.560 kb on - strand at 856.620 kb on + strand at 856.621 kb on - strand at 856.630 kb on + strand at 856.630 kb on + strand at 856.631 kb on - strand at 856.631 kb on - strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.646 kb on + strand at 856.646 kb on + strand at 856.646 kb on + strand at 856.646 kb on + strand at 856.647 kb on - strand at 856.647 kb on - strand at 856.647 kb on - strand at 856.647 kb on - strand at 856.654 kb on - strand at 856.654 kb on - strand at 856.654 kb on - strand at 856.683 kb on - strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.691 kb on - strand at 856.691 kb on - strand at 856.691 kb on - strand at 856.697 kb on - strand at 856.712 kb on - strand at 856.712 kb on - strand at 856.712 kb on - strand at 856.723 kb on - strand at 856.760 kb on - strand at 856.760 kb on - strand at 856.788 kb on + strand at 856.814 kb on - strand at 856.814 kb on - strand at 856.834 kb on + strand at 856.834 kb on + strand at 856.834 kb on + strand at 856.835 kb on - strand at 856.835 kb on - strand at 856.835 kb on - strand at 856.864 kb on + strand at 856.905 kb on - strand at 856.912 kb on - strand at 857.004 kb on - strand at 857.167 kb on + strand, within DZA65_RS04060 at 857.271 kb on + strand, within DZA65_RS04060 at 857.287 kb on - strand, within DZA65_RS04060 at 857.370 kb on + strand, within DZA65_RS04060 at 857.370 kb on + strand, within DZA65_RS04060 at 857.527 kb on + strand, within DZA65_RS04060 at 857.573 kb on - strand at 857.783 kb on + strand, within DZA65_RS04060 at 857.845 kb on + strand, within DZA65_RS04060 at 857.845 kb on + strand, within DZA65_RS04060 at 857.845 kb on + strand, within DZA65_RS04060 at 857.846 kb on - strand, within DZA65_RS04060 at 857.850 kb on - strand, within DZA65_RS04060 at 857.850 kb on - strand, within DZA65_RS04060 at 857.850 kb on - strand, within DZA65_RS04060 at 857.882 kb on + strand, within DZA65_RS04060 at 857.882 kb on + strand, within DZA65_RS04060 at 857.883 kb on - strand, within DZA65_RS04060 at 857.883 kb on - strand, within DZA65_RS04060 at 857.981 kb on + strand, within DZA65_RS04060 at 857.982 kb on - strand, within DZA65_RS04060 at 857.988 kb on - strand, within DZA65_RS04060 at 857.988 kb on - strand, within DZA65_RS04060 at 857.988 kb on - strand, within DZA65_RS04060 at 858.163 kb on - strand, within DZA65_RS04060 at 858.211 kb on + strand, within DZA65_RS04060 at 858.211 kb on + strand, within DZA65_RS04060 at 858.260 kb on + strand, within DZA65_RS04060 at 858.324 kb on + strand at 858.324 kb on + strand at 858.325 kb on - strand at 858.432 kb on + strand at 858.433 kb on - strand at 858.433 kb on - strand at 858.433 kb on - strand at 859.405 kb on - strand at 859.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 855,922 + DZA65_RS04055 0.67 -1.9 856,147 + DZA65_RS04055 0.78 +0.7 856,147 + DZA65_RS04055 0.78 +0.3 856,147 + DZA65_RS04055 0.78 -0.2 856,147 + DZA65_RS04055 0.78 +0.4 856,147 + DZA65_RS04055 0.78 -0.3 856,148 - DZA65_RS04055 0.78 +0.3 856,148 - DZA65_RS04055 0.78 -0.4 856,148 - DZA65_RS04055 0.78 -1.0 856,207 + DZA65_RS04055 0.80 -0.1 856,207 + DZA65_RS04055 0.80 -0.6 856,207 + DZA65_RS04055 0.80 +0.3 856,208 - DZA65_RS04055 0.80 -0.7 856,267 + DZA65_RS04055 0.83 +0.8 856,267 + DZA65_RS04055 0.83 -2.1 856,267 + DZA65_RS04055 0.83 -0.1 856,267 + DZA65_RS04055 0.83 -2.1 856,268 - DZA65_RS04055 0.83 -1.4 856,268 - DZA65_RS04055 0.83 -1.4 856,268 - DZA65_RS04055 0.83 +0.7 856,401 + DZA65_RS04055 0.90 -1.7 856,401 + DZA65_RS04055 0.90 +1.4 856,401 + DZA65_RS04055 0.90 +0.4 856,401 + DZA65_RS04055 0.90 +0.9 856,401 + DZA65_RS04055 0.90 +1.1 856,401 + DZA65_RS04055 0.90 +1.4 856,402 - DZA65_RS04055 0.90 -0.2 856,402 - DZA65_RS04055 0.90 +0.6 856,402 - DZA65_RS04055 0.90 -0.6 856,407 + +0.2 856,408 - +0.5 856,408 - -0.1 856,448 + +0.0 856,559 + -0.4 856,559 + -1.8 856,560 - +0.1 856,560 - +0.4 856,560 - -0.9 856,620 + +0.2 856,621 - +0.1 856,630 + -0.6 856,630 + -0.3 856,631 - +0.2 856,631 - -1.3 856,644 + +0.1 856,644 + -0.6 856,644 + -0.3 856,644 + +0.1 856,644 + -0.4 856,645 - -1.1 856,645 - -0.6 856,645 - +0.1 856,645 - -0.3 856,645 - +2.1 856,645 - -1.1 856,646 + -1.1 856,646 + +2.2 856,646 + -0.2 856,646 + -1.6 856,647 - -1.7 856,647 - -0.0 856,647 - -0.0 856,647 - -0.5 856,654 - +0.4 856,654 - +0.4 856,654 - +0.1 856,683 - -0.7 856,690 + -0.6 856,690 + +1.0 856,690 + -0.2 856,690 + -0.3 856,690 + -1.1 856,691 - -0.6 856,691 - +0.9 856,691 - +1.5 856,697 - +0.7 856,712 - +0.1 856,712 - -0.1 856,712 - -0.9 856,723 - -0.4 856,760 - -0.3 856,760 - -1.4 856,788 + -0.3 856,814 - +0.0 856,814 - -0.6 856,834 + +0.9 856,834 + -0.6 856,834 + +0.2 856,835 - +0.0 856,835 - -0.1 856,835 - +0.2 856,864 + -0.0 856,905 - +0.0 856,912 - +1.9 857,004 - -0.9 857,167 + DZA65_RS04060 0.17 -0.6 857,271 + DZA65_RS04060 0.24 -1.9 857,287 - DZA65_RS04060 0.25 +0.2 857,370 + DZA65_RS04060 0.30 +0.3 857,370 + DZA65_RS04060 0.30 -0.9 857,527 + DZA65_RS04060 0.41 -1.3 857,573 - +1.8 857,783 + DZA65_RS04060 0.58 -0.4 857,845 + DZA65_RS04060 0.62 -1.9 857,845 + DZA65_RS04060 0.62 -0.3 857,845 + DZA65_RS04060 0.62 +0.8 857,846 - DZA65_RS04060 0.62 +1.3 857,850 - DZA65_RS04060 0.62 -0.4 857,850 - DZA65_RS04060 0.62 -0.2 857,850 - DZA65_RS04060 0.62 +1.3 857,882 + DZA65_RS04060 0.64 -0.0 857,882 + DZA65_RS04060 0.64 -0.5 857,883 - DZA65_RS04060 0.64 -0.4 857,883 - DZA65_RS04060 0.64 -0.1 857,981 + DZA65_RS04060 0.71 -1.0 857,982 - DZA65_RS04060 0.71 -0.8 857,988 - DZA65_RS04060 0.71 +1.4 857,988 - DZA65_RS04060 0.71 -0.5 857,988 - DZA65_RS04060 0.71 +0.7 858,163 - DZA65_RS04060 0.83 -0.6 858,211 + DZA65_RS04060 0.86 +0.8 858,211 + DZA65_RS04060 0.86 -0.7 858,260 + DZA65_RS04060 0.89 -0.9 858,324 + -0.9 858,324 + +0.3 858,325 - +0.7 858,432 + +1.0 858,433 - +0.7 858,433 - +0.2 858,433 - -0.2 859,405 - -0.1 859,410 - +0.6
Or see this region's nucleotide sequence