Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03960 and DZA65_RS03965 are separated by 10 nucleotides DZA65_RS03965 and DZA65_RS03970 overlap by 8 nucleotides DZA65_RS03970 and DZA65_RS03975 overlap by 10 nucleotides DZA65_RS03975 and DZA65_RS22805 are separated by 7 nucleotides DZA65_RS22805 and DZA65_RS03980 overlap by 4 nucleotides
DZA65_RS03960: DZA65_RS03960 - DNA primase, at 840,311 to 842,635
_RS03960
DZA65_RS03965: DZA65_RS03965 - hypothetical protein, at 842,646 to 842,858
_RS03965
DZA65_RS03970: DZA65_RS03970 - host cell division inhibitor Icd-like protein, at 842,851 to 843,048
_RS03970
DZA65_RS03975: DZA65_RS03975 - ash family protein, at 843,039 to 843,395
_RS03975
DZA65_RS22805: DZA65_RS22805 - hypothetical protein, at 843,403 to 843,549
_RS22805
DZA65_RS03980: DZA65_RS03980 - AlpA family transcriptional regulator, at 843,546 to 843,806
_RS03980
Position (kb) 842
843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 841.928 kb on - strand, within DZA65_RS03960 at 841.944 kb on + strand, within DZA65_RS03960 at 841.944 kb on + strand, within DZA65_RS03960 at 841.944 kb on + strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.952 kb on - strand, within DZA65_RS03960 at 841.968 kb on + strand, within DZA65_RS03960 at 841.969 kb on - strand, within DZA65_RS03960 at 841.989 kb on + strand, within DZA65_RS03960 at 841.989 kb on + strand, within DZA65_RS03960 at 841.989 kb on + strand, within DZA65_RS03960 at 842.008 kb on + strand, within DZA65_RS03960 at 842.008 kb on + strand, within DZA65_RS03960 at 842.066 kb on + strand, within DZA65_RS03960 at 842.138 kb on + strand, within DZA65_RS03960 at 842.139 kb on - strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.161 kb on - strand, within DZA65_RS03960 at 842.161 kb on - strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.166 kb on - strand, within DZA65_RS03960 at 842.166 kb on - strand, within DZA65_RS03960 at 842.196 kb on - strand, within DZA65_RS03960 at 842.196 kb on - strand, within DZA65_RS03960 at 842.196 kb on - strand at 842.196 kb on - strand, within DZA65_RS03960 at 842.205 kb on - strand, within DZA65_RS03960 at 842.239 kb on - strand, within DZA65_RS03960 at 842.257 kb on + strand, within DZA65_RS03960 at 842.258 kb on - strand, within DZA65_RS03960 at 842.459 kb on - strand at 842.623 kb on + strand at 842.623 kb on + strand at 842.623 kb on + strand at 842.624 kb on - strand at 842.624 kb on - strand at 842.624 kb on - strand at 842.705 kb on + strand, within DZA65_RS03965 at 842.730 kb on + strand, within DZA65_RS03965 at 842.730 kb on + strand, within DZA65_RS03965 at 842.731 kb on - strand, within DZA65_RS03965 at 842.731 kb on - strand, within DZA65_RS03965 at 842.731 kb on - strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.823 kb on - strand, within DZA65_RS03965 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.978 kb on - strand, within DZA65_RS03970 at 843.012 kb on + strand, within DZA65_RS03970 at 843.013 kb on - strand, within DZA65_RS03970 at 843.013 kb on - strand, within DZA65_RS03970 at 843.067 kb on + strand at 843.068 kb on - strand at 843.071 kb on + strand at 843.071 kb on + strand at 843.071 kb on + strand at 843.072 kb on - strand at 843.072 kb on - strand at 843.081 kb on - strand, within DZA65_RS03975 at 843.111 kb on - strand, within DZA65_RS03975 at 843.131 kb on - strand, within DZA65_RS03975 at 843.185 kb on + strand, within DZA65_RS03975 at 843.186 kb on - strand, within DZA65_RS03975 at 843.186 kb on - strand, within DZA65_RS03975 at 843.186 kb on - strand at 843.207 kb on + strand, within DZA65_RS03975 at 843.207 kb on + strand, within DZA65_RS03975 at 843.208 kb on - strand, within DZA65_RS03975 at 843.208 kb on - strand, within DZA65_RS03975 at 843.238 kb on - strand, within DZA65_RS03975 at 843.313 kb on - strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.380 kb on + strand at 843.381 kb on - strand at 843.444 kb on - strand, within DZA65_RS22805 at 843.534 kb on + strand, within DZA65_RS22805 at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.680 kb on - strand, within DZA65_RS03980 at 843.699 kb on - strand, within DZA65_RS03980 at 843.859 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.867 kb on - strand at 843.867 kb on - strand at 843.874 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.885 kb on + strand at 843.947 kb on + strand at 843.973 kb on + strand at 843.974 kb on - strand at 843.984 kb on - strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.997 kb on - strand at 844.020 kb on - strand at 844.029 kb on + strand at 844.030 kb on - strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.035 kb on + strand at 844.036 kb on - strand at 844.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 841,928 - DZA65_RS03960 0.70 -0.4 841,944 + DZA65_RS03960 0.70 +1.5 841,944 + DZA65_RS03960 0.70 +0.3 841,944 + DZA65_RS03960 0.70 +0.8 841,945 - DZA65_RS03960 0.70 -0.6 841,945 - DZA65_RS03960 0.70 +0.3 841,945 - DZA65_RS03960 0.70 +0.9 841,945 - DZA65_RS03960 0.70 -2.1 841,945 - DZA65_RS03960 0.70 +0.2 841,945 - DZA65_RS03960 0.70 -2.7 841,945 - DZA65_RS03960 0.70 -0.9 841,952 - DZA65_RS03960 0.71 +0.7 841,968 + DZA65_RS03960 0.71 -1.5 841,969 - DZA65_RS03960 0.71 -0.4 841,989 + DZA65_RS03960 0.72 +0.8 841,989 + DZA65_RS03960 0.72 -0.3 841,989 + DZA65_RS03960 0.72 -0.1 842,008 + DZA65_RS03960 0.73 -0.1 842,008 + DZA65_RS03960 0.73 +0.7 842,066 + DZA65_RS03960 0.75 -0.8 842,138 + DZA65_RS03960 0.79 +0.9 842,139 - DZA65_RS03960 0.79 +0.2 842,144 + DZA65_RS03960 0.79 -0.4 842,144 + DZA65_RS03960 0.79 -0.1 842,144 + DZA65_RS03960 0.79 +1.0 842,144 + DZA65_RS03960 0.79 +1.3 842,144 + DZA65_RS03960 0.79 -0.5 842,145 - DZA65_RS03960 0.79 +0.6 842,145 - DZA65_RS03960 0.79 +0.0 842,145 - DZA65_RS03960 0.79 +1.1 842,145 - DZA65_RS03960 0.79 -2.1 842,145 - DZA65_RS03960 0.79 -0.0 842,145 - DZA65_RS03960 0.79 -0.5 842,145 - DZA65_RS03960 0.79 -1.2 842,145 - DZA65_RS03960 0.79 +1.1 842,145 - DZA65_RS03960 0.79 +0.0 842,145 - DZA65_RS03960 0.79 -0.9 842,145 - DZA65_RS03960 0.79 -0.3 842,160 + DZA65_RS03960 0.80 +1.5 842,160 + DZA65_RS03960 0.80 -0.5 842,160 + DZA65_RS03960 0.80 -0.4 842,160 + DZA65_RS03960 0.80 -0.5 842,161 - DZA65_RS03960 0.80 +0.9 842,161 - DZA65_RS03960 0.80 -0.5 842,165 + DZA65_RS03960 0.80 +1.5 842,165 + DZA65_RS03960 0.80 -0.2 842,165 + DZA65_RS03960 0.80 +0.5 842,165 + DZA65_RS03960 0.80 +0.3 842,165 + DZA65_RS03960 0.80 -0.1 842,165 + DZA65_RS03960 0.80 +0.0 842,166 - DZA65_RS03960 0.80 +0.5 842,166 - DZA65_RS03960 0.80 -0.0 842,196 - DZA65_RS03960 0.81 -0.2 842,196 - DZA65_RS03960 0.81 +1.8 842,196 - +0.9 842,196 - DZA65_RS03960 0.81 -0.5 842,205 - DZA65_RS03960 0.81 +0.1 842,239 - DZA65_RS03960 0.83 +0.3 842,257 + DZA65_RS03960 0.84 -0.3 842,258 - DZA65_RS03960 0.84 -2.4 842,459 - +0.3 842,623 + -0.5 842,623 + -0.2 842,623 + -0.0 842,624 - +0.1 842,624 - -0.3 842,624 - +0.2 842,705 + DZA65_RS03965 0.28 -0.2 842,730 + DZA65_RS03965 0.39 -0.7 842,730 + DZA65_RS03965 0.39 +0.2 842,731 - DZA65_RS03965 0.40 -0.2 842,731 - DZA65_RS03965 0.40 -0.5 842,731 - DZA65_RS03965 0.40 -1.0 842,797 + DZA65_RS03965 0.71 -0.9 842,797 + DZA65_RS03965 0.71 -0.2 842,797 + DZA65_RS03965 0.71 +0.3 842,797 + DZA65_RS03965 0.71 +0.5 842,797 + DZA65_RS03965 0.71 -0.1 842,797 + DZA65_RS03965 0.71 +1.3 842,798 - DZA65_RS03965 0.71 +0.6 842,798 - DZA65_RS03965 0.71 -0.3 842,798 - DZA65_RS03965 0.71 -0.3 842,798 - DZA65_RS03965 0.71 +0.8 842,798 - DZA65_RS03965 0.71 +0.2 842,798 - DZA65_RS03965 0.71 -0.9 842,823 - DZA65_RS03965 0.83 -1.4 842,903 + DZA65_RS03970 0.26 +1.1 842,903 + DZA65_RS03970 0.26 -1.4 842,903 + DZA65_RS03970 0.26 +0.1 842,903 + DZA65_RS03970 0.26 +0.5 842,903 + DZA65_RS03970 0.26 -0.1 842,904 - DZA65_RS03970 0.27 -0.9 842,904 - DZA65_RS03970 0.27 -0.1 842,904 - DZA65_RS03970 0.27 +1.0 842,904 - DZA65_RS03970 0.27 +0.6 842,904 - DZA65_RS03970 0.27 +0.3 842,904 - DZA65_RS03970 0.27 +0.3 842,904 - DZA65_RS03970 0.27 +0.4 842,904 - DZA65_RS03970 0.27 +0.9 842,978 - DZA65_RS03970 0.64 +0.2 843,012 + DZA65_RS03970 0.81 +0.5 843,013 - DZA65_RS03970 0.82 +0.9 843,013 - DZA65_RS03970 0.82 -0.0 843,067 + -1.1 843,068 - -1.5 843,071 + -0.9 843,071 + +0.1 843,071 + +0.3 843,072 - +0.8 843,072 - +0.2 843,081 - DZA65_RS03975 0.12 -0.7 843,111 - DZA65_RS03975 0.20 +1.5 843,131 - DZA65_RS03975 0.26 -2.1 843,185 + DZA65_RS03975 0.41 -1.6 843,186 - DZA65_RS03975 0.41 +1.2 843,186 - DZA65_RS03975 0.41 -2.4 843,186 - -0.5 843,207 + DZA65_RS03975 0.47 +1.0 843,207 + DZA65_RS03975 0.47 -0.8 843,208 - DZA65_RS03975 0.47 +1.2 843,208 - DZA65_RS03975 0.47 -0.2 843,238 - DZA65_RS03975 0.56 -0.3 843,313 - DZA65_RS03975 0.77 +0.3 843,338 + DZA65_RS03975 0.84 -0.8 843,338 + DZA65_RS03975 0.84 -0.5 843,338 + DZA65_RS03975 0.84 +0.3 843,338 + DZA65_RS03975 0.84 +0.8 843,338 + DZA65_RS03975 0.84 -0.7 843,338 + DZA65_RS03975 0.84 -0.3 843,338 + DZA65_RS03975 0.84 +0.0 843,338 + DZA65_RS03975 0.84 -0.9 843,338 + DZA65_RS03975 0.84 -0.4 843,338 + DZA65_RS03975 0.84 +0.2 843,338 + DZA65_RS03975 0.84 -2.5 843,338 + DZA65_RS03975 0.84 +0.2 843,338 + DZA65_RS03975 0.84 +0.2 843,339 - DZA65_RS03975 0.84 -0.1 843,339 - DZA65_RS03975 0.84 +0.8 843,339 - DZA65_RS03975 0.84 -0.3 843,339 - DZA65_RS03975 0.84 +0.0 843,339 - DZA65_RS03975 0.84 -0.5 843,339 - DZA65_RS03975 0.84 -2.1 843,339 - DZA65_RS03975 0.84 +0.5 843,339 - DZA65_RS03975 0.84 +0.5 843,339 - DZA65_RS03975 0.84 +1.3 843,380 + -0.5 843,381 - -0.2 843,444 - DZA65_RS22805 0.28 +2.3 843,534 + DZA65_RS22805 0.89 +0.9 843,538 + -0.5 843,538 + +0.5 843,538 + -0.5 843,538 + -0.8 843,538 + +1.9 843,538 + +1.5 843,538 + +1.5 843,538 + +0.5 843,538 + +0.8 843,538 + -0.4 843,539 - +0.3 843,539 - +0.1 843,539 - -1.0 843,539 - +0.3 843,539 - -0.0 843,539 - -0.0 843,680 - DZA65_RS03980 0.51 -0.4 843,699 - DZA65_RS03980 0.59 -0.9 843,859 + -1.0 843,866 + +1.0 843,866 + +0.6 843,866 + +0.2 843,867 - +0.5 843,867 - +1.2 843,874 + -0.5 843,877 + -0.5 843,877 + -1.7 843,877 + -0.2 843,877 + +0.3 843,877 + +0.1 843,877 + -2.9 843,877 + -0.9 843,878 - -0.1 843,878 - +0.0 843,878 - -0.6 843,878 - -0.9 843,878 - +0.2 843,878 - +0.2 843,878 - -0.3 843,878 - +0.5 843,878 - -0.5 843,885 + +0.3 843,947 + +0.5 843,973 + -0.2 843,974 - -0.6 843,984 - -0.4 843,985 + +0.1 843,985 + +0.6 843,985 + -0.5 843,985 + -0.1 843,985 + -0.6 843,985 + +1.6 843,986 - -0.3 843,986 - +0.4 843,986 - -0.8 843,986 - -0.9 843,986 - -0.0 843,986 - -0.4 843,986 - -0.2 843,997 - -0.6 844,020 - +0.2 844,029 + +0.6 844,030 - -0.5 844,033 + +0.4 844,033 + -2.1 844,033 + -0.1 844,034 - -0.4 844,034 - -0.5 844,034 - -1.9 844,034 - +0.0 844,035 + -0.0 844,036 - -0.3 844,036 - +0.2
Or see this region's nucleotide sequence