Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03795 and DZA65_RS03800 are separated by 561 nucleotides DZA65_RS03800 and DZA65_RS03805 are separated by 142 nucleotides DZA65_RS03805 and DZA65_RS03810 are separated by 108 nucleotides
DZA65_RS03795: DZA65_RS03795 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 803,329 to 806,862
_RS03795
DZA65_RS03800: DZA65_RS03800 - hypothetical protein, at 807,424 to 807,846
_RS03800
DZA65_RS03805: DZA65_RS03805 - GNAT family N-acetyltransferase, at 807,989 to 808,534
_RS03805
DZA65_RS03810: DZA65_RS03810 - YnfC family lipoprotein, at 808,643 to 809,368
_RS03810
Position (kb) 807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 806.582 kb on + strand at 806.582 kb on + strand at 806.582 kb on + strand at 806.583 kb on - strand at 806.583 kb on - strand at 806.583 kb on - strand at 806.622 kb on + strand at 806.622 kb on + strand at 806.622 kb on + strand at 806.623 kb on - strand at 806.623 kb on - strand at 806.623 kb on - strand at 806.712 kb on + strand at 806.713 kb on - strand at 806.713 kb on - strand at 806.713 kb on - strand at 806.724 kb on + strand at 806.724 kb on + strand at 806.724 kb on + strand at 806.724 kb on + strand at 806.725 kb on - strand at 806.725 kb on - strand at 806.792 kb on + strand at 806.793 kb on - strand at 806.793 kb on - strand at 806.793 kb on - strand at 806.797 kb on - strand at 806.797 kb on - strand at 806.803 kb on - strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.868 kb on - strand at 806.868 kb on - strand at 806.868 kb on - strand at 806.868 kb on - strand at 806.897 kb on - strand at 806.907 kb on + strand at 806.907 kb on + strand at 806.907 kb on + strand at 806.907 kb on + strand at 806.908 kb on - strand at 806.908 kb on - strand at 806.908 kb on - strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.911 kb on - strand at 806.911 kb on - strand at 806.911 kb on - strand at 806.942 kb on - strand at 806.943 kb on + strand at 806.943 kb on + strand at 806.943 kb on + strand at 806.944 kb on - strand at 806.944 kb on - strand at 806.970 kb on + strand at 807.007 kb on + strand at 807.007 kb on + strand at 807.008 kb on - strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.088 kb on - strand at 807.088 kb on - strand at 807.103 kb on + strand at 807.103 kb on + strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.129 kb on + strand at 807.129 kb on + strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.132 kb on + strand at 807.132 kb on + strand at 807.132 kb on + strand at 807.132 kb on + strand at 807.133 kb on - strand at 807.133 kb on - strand at 807.137 kb on + strand at 807.137 kb on + strand at 807.137 kb on + strand at 807.137 kb on + strand at 807.138 kb on - strand at 807.138 kb on - strand at 807.138 kb on - strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.158 kb on - strand at 807.158 kb on - strand at 807.158 kb on - strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.278 kb on + strand at 807.278 kb on + strand at 807.278 kb on + strand at 807.278 kb on + strand at 807.279 kb on - strand at 807.361 kb on + strand at 807.361 kb on + strand at 807.361 kb on + strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.372 kb on + strand at 807.423 kb on + strand at 807.423 kb on + strand at 807.423 kb on + strand at 807.423 kb on + strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.430 kb on - strand at 807.458 kb on + strand at 807.458 kb on + strand at 807.459 kb on - strand at 807.459 kb on - strand at 807.459 kb on - strand at 807.461 kb on + strand at 807.484 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand at 807.511 kb on - strand, within DZA65_RS03800 at 807.578 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.601 kb on + strand, within DZA65_RS03800 at 807.602 kb on - strand, within DZA65_RS03800 at 807.655 kb on + strand, within DZA65_RS03800 at 807.748 kb on + strand, within DZA65_RS03800 at 807.756 kb on + strand, within DZA65_RS03800 at 807.791 kb on - strand, within DZA65_RS03800 at 807.800 kb on - strand, within DZA65_RS03800 at 807.838 kb on + strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.870 kb on - strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.937 kb on - strand at 808.193 kb on + strand, within DZA65_RS03805 at 808.335 kb on + strand, within DZA65_RS03805 at 808.336 kb on - strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.574 kb on + strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.581 kb on - strand at 808.581 kb on - strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.605 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.643 kb on - strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.651 kb on - strand at 808.651 kb on - strand at 808.678 kb on - strand at 808.678 kb on - strand at 808.680 kb on + strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 806,582 + -0.6 806,582 + -1.1 806,582 + -0.6 806,583 - +0.5 806,583 - -0.0 806,583 - -0.5 806,622 + +0.5 806,622 + -0.3 806,622 + -0.8 806,623 - -1.5 806,623 - -0.4 806,623 - -0.4 806,712 + -0.8 806,713 - +0.4 806,713 - +0.4 806,713 - -0.3 806,724 + -0.1 806,724 + +0.3 806,724 + -0.9 806,724 + +0.0 806,725 - -0.5 806,725 - +0.6 806,792 + -2.1 806,793 - -0.8 806,793 - +0.3 806,793 - -1.0 806,797 - +0.1 806,797 - -0.0 806,803 - +1.0 806,867 + +0.3 806,867 + -1.0 806,867 + -1.9 806,867 + +0.2 806,867 + -0.7 806,867 + -0.4 806,868 - +1.2 806,868 - +0.5 806,868 - -0.9 806,868 - +0.7 806,897 - +0.6 806,907 + +0.0 806,907 + -1.3 806,907 + -0.1 806,907 + -0.8 806,908 - +0.0 806,908 - +1.4 806,908 - -2.5 806,910 + +0.0 806,910 + -0.1 806,910 + -0.1 806,910 + +0.6 806,910 + -0.3 806,911 - -0.4 806,911 - +0.5 806,911 - +0.2 806,942 - +0.4 806,943 + +0.7 806,943 + -1.0 806,943 + +0.2 806,944 - -1.9 806,944 - -0.7 806,970 + +0.9 807,007 + -0.1 807,007 + -0.4 807,008 - +0.5 807,087 + -1.5 807,087 + -2.0 807,087 + -0.0 807,087 + -0.4 807,087 + +0.7 807,087 + +0.4 807,087 + -0.8 807,087 + -1.4 807,088 - -0.5 807,088 - -0.4 807,103 + -0.3 807,103 + -0.1 807,104 - -1.1 807,104 - +0.7 807,104 - -0.3 807,104 - +0.2 807,104 - +0.6 807,129 + +0.3 807,129 + +0.2 807,130 - -0.6 807,130 - +0.0 807,130 - -0.1 807,130 - -0.2 807,130 - +0.6 807,132 + -0.8 807,132 + -2.0 807,132 + -0.5 807,132 + -0.8 807,133 - -0.1 807,133 - -2.4 807,137 + -1.0 807,137 + +0.5 807,137 + +0.0 807,137 + -0.7 807,138 - -0.1 807,138 - +1.7 807,138 - -1.9 807,157 + +0.5 807,157 + -1.4 807,157 + +0.0 807,157 + +0.5 807,157 + -0.3 807,157 + +0.1 807,158 - -1.0 807,158 - -0.0 807,158 - +0.3 807,159 + -1.7 807,159 + +0.5 807,159 + -1.5 807,159 + -1.8 807,159 + -0.1 807,159 + +0.7 807,159 + +0.5 807,159 + -0.1 807,160 - -0.9 807,160 - +0.5 807,160 - +0.1 807,160 - +0.7 807,160 - -0.4 807,269 - -0.4 807,269 - +1.2 807,269 - -0.2 807,269 - -1.1 807,269 - +0.2 807,278 + -2.1 807,278 + -1.0 807,278 + +0.2 807,278 + +0.7 807,279 - -0.2 807,361 + -0.0 807,361 + -0.3 807,361 + -0.4 807,362 - -0.9 807,362 - +0.1 807,362 - -0.2 807,362 - -0.3 807,362 - +0.0 807,372 + +0.9 807,423 + -0.7 807,423 + +0.7 807,423 + +0.1 807,423 + +0.5 807,424 - +0.0 807,424 - -0.5 807,424 - +0.7 807,424 - +0.5 807,424 - +0.5 807,424 - -0.5 807,424 - -1.1 807,424 - -0.4 807,430 - -0.3 807,458 + +1.7 807,458 + +0.2 807,459 - +0.1 807,459 - -0.5 807,459 - -0.5 807,461 + +1.0 807,484 + DZA65_RS03800 0.14 -3.1 807,501 + DZA65_RS03800 0.18 +0.4 807,501 + DZA65_RS03800 0.18 -0.2 807,501 + DZA65_RS03800 0.18 -0.9 807,501 + DZA65_RS03800 0.18 +1.0 807,501 + DZA65_RS03800 0.18 -1.1 807,501 + DZA65_RS03800 0.18 -0.9 807,501 + DZA65_RS03800 0.18 +0.9 807,501 + DZA65_RS03800 0.18 -0.0 807,502 - DZA65_RS03800 0.18 +1.9 807,502 - DZA65_RS03800 0.18 -1.7 807,502 - -2.1 807,502 - DZA65_RS03800 0.18 -0.0 807,502 - DZA65_RS03800 0.18 +0.2 807,502 - DZA65_RS03800 0.18 -0.1 807,510 + DZA65_RS03800 0.20 +0.5 807,510 + DZA65_RS03800 0.20 +0.6 807,510 + DZA65_RS03800 0.20 -0.7 807,510 + DZA65_RS03800 0.20 -2.0 807,511 - DZA65_RS03800 0.21 -0.5 807,511 - DZA65_RS03800 0.21 -0.5 807,511 - DZA65_RS03800 0.21 -0.5 807,511 - DZA65_RS03800 0.21 -1.1 807,511 - +0.0 807,511 - DZA65_RS03800 0.21 -0.6 807,578 + DZA65_RS03800 0.36 -1.6 807,597 + DZA65_RS03800 0.41 +0.5 807,597 + DZA65_RS03800 0.41 +0.5 807,597 + DZA65_RS03800 0.41 -0.2 807,597 + DZA65_RS03800 0.41 -0.5 807,597 + DZA65_RS03800 0.41 -0.4 807,597 + DZA65_RS03800 0.41 +0.8 807,597 + -0.5 807,598 - DZA65_RS03800 0.41 -2.7 807,598 - DZA65_RS03800 0.41 -1.0 807,598 - DZA65_RS03800 0.41 +0.3 807,598 - DZA65_RS03800 0.41 -0.4 807,598 - DZA65_RS03800 0.41 +1.3 807,598 - DZA65_RS03800 0.41 +0.0 807,601 + DZA65_RS03800 0.42 -0.6 807,602 - DZA65_RS03800 0.42 +0.3 807,655 + DZA65_RS03800 0.55 -0.7 807,748 + DZA65_RS03800 0.77 +0.1 807,756 + DZA65_RS03800 0.78 +1.0 807,791 - DZA65_RS03800 0.87 -1.5 807,800 - DZA65_RS03800 0.89 +0.7 807,838 + +0.6 807,839 - -0.1 807,839 - -1.3 807,839 - -0.4 807,839 - +0.0 807,839 - -0.2 807,839 - -0.2 807,869 + +0.1 807,869 + +0.1 807,869 + +0.2 807,870 - -0.9 807,936 + +0.5 807,936 + +1.2 807,936 + -0.1 807,936 + -0.5 807,937 - -0.5 808,193 + DZA65_RS03805 0.37 +0.6 808,335 + DZA65_RS03805 0.63 +0.9 808,336 - DZA65_RS03805 0.64 +0.7 808,376 + DZA65_RS03805 0.71 -2.7 808,376 + DZA65_RS03805 0.71 -0.9 808,376 + DZA65_RS03805 0.71 -0.3 808,376 + DZA65_RS03805 0.71 +1.0 808,376 + DZA65_RS03805 0.71 -0.7 808,376 + DZA65_RS03805 0.71 -0.4 808,376 + DZA65_RS03805 0.71 +0.5 808,376 + DZA65_RS03805 0.71 -1.4 808,376 + DZA65_RS03805 0.71 -0.5 808,377 - DZA65_RS03805 0.71 +0.5 808,377 - DZA65_RS03805 0.71 -0.3 808,377 - DZA65_RS03805 0.71 +0.0 808,499 + -0.2 808,499 + -0.5 808,499 + -1.1 808,499 + -0.4 808,499 + -0.1 808,499 + +0.1 808,499 + +1.7 808,500 - -0.1 808,500 - -0.9 808,500 - -2.4 808,574 + +1.0 808,575 - -0.3 808,575 - +0.6 808,575 - +0.3 808,580 + -0.1 808,580 + -1.4 808,580 + -0.1 808,581 - -0.4 808,581 - +0.1 808,589 + +0.3 808,589 + +0.3 808,589 + +0.9 808,589 + +1.5 808,589 + +0.2 808,589 + +1.9 808,605 - -0.3 808,627 - +0.8 808,627 - -1.8 808,627 - +0.0 808,642 + -1.9 808,642 + -0.2 808,642 + +0.6 808,642 + +0.1 808,642 + +0.5 808,642 + +1.8 808,643 - -0.7 808,650 + +0.9 808,650 + +1.0 808,650 + -0.5 808,650 + +0.6 808,651 - +0.1 808,651 - +0.3 808,678 - +1.0 808,678 - +0.1 808,680 + -2.1 808,681 - -0.9 808,681 - -0.9 808,681 - +0.7 808,829 + DZA65_RS03810 0.26 -2.9 808,829 + DZA65_RS03810 0.26 -0.9 808,829 + DZA65_RS03810 0.26 +0.5 808,829 + DZA65_RS03810 0.26 -0.3 808,829 + DZA65_RS03810 0.26 +0.3 808,829 + DZA65_RS03810 0.26 -0.8 808,830 - DZA65_RS03810 0.26 +0.7 808,830 - DZA65_RS03810 0.26 +0.1 808,830 - DZA65_RS03810 0.26 +1.5 808,830 - DZA65_RS03810 0.26 -0.3 808,830 - DZA65_RS03810 0.26 +0.1 808,830 - DZA65_RS03810 0.26 +0.7
Or see this region's nucleotide sequence