Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03465 and DZA65_RS03470 overlap by 20 nucleotides DZA65_RS03470 and DZA65_RS03475 are separated by 94 nucleotides DZA65_RS03475 and DZA65_RS03480 are separated by 128 nucleotides
DZA65_RS03465: DZA65_RS03465 - FAD assembly factor SdhE, at 732,999 to 733,265
_RS03465
DZA65_RS03470: DZA65_RS03470 - membrane protein, at 733,246 to 733,677
_RS03470
DZA65_RS03475: DZA65_RS03475 - flavodoxin FldB, at 733,772 to 734,290
_RS03475
DZA65_RS03480: DZA65_RS03480 - MHS family MFS transporter, at 734,419 to 735,744
_RS03480
Position (kb) 733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 732.832 kb on + strand at 732.843 kb on + strand at 732.843 kb on + strand at 732.843 kb on + strand at 732.844 kb on - strand at 732.844 kb on - strand at 732.844 kb on - strand at 732.844 kb on - strand at 732.844 kb on - strand at 732.863 kb on + strand at 732.863 kb on + strand at 732.863 kb on + strand at 732.864 kb on - strand at 732.864 kb on - strand at 732.866 kb on + strand at 732.866 kb on + strand at 732.866 kb on + strand at 732.866 kb on + strand at 732.867 kb on - strand at 732.867 kb on - strand at 732.879 kb on - strand at 732.888 kb on + strand at 732.889 kb on - strand at 732.902 kb on - strand at 732.904 kb on + strand at 732.904 kb on + strand at 732.905 kb on - strand at 732.907 kb on + strand at 732.908 kb on - strand at 732.925 kb on + strand at 732.925 kb on + strand at 732.925 kb on + strand at 732.930 kb on + strand at 732.931 kb on - strand at 732.936 kb on + strand at 732.936 kb on + strand at 732.936 kb on + strand at 732.936 kb on + strand at 732.936 kb on + strand at 732.936 kb on + strand at 732.937 kb on - strand at 732.975 kb on + strand at 732.975 kb on + strand at 732.976 kb on - strand at 733.022 kb on + strand at 733.022 kb on + strand at 733.093 kb on - strand, within DZA65_RS03465 at 733.093 kb on - strand, within DZA65_RS03465 at 733.238 kb on + strand, within DZA65_RS03465 at 733.238 kb on + strand, within DZA65_RS03465 at 733.238 kb on + strand, within DZA65_RS03465 at 733.239 kb on - strand at 733.268 kb on + strand at 733.268 kb on + strand at 733.275 kb on - strand at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.496 kb on + strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.497 kb on - strand, within DZA65_RS03470 at 733.593 kb on + strand, within DZA65_RS03470 at 733.593 kb on + strand, within DZA65_RS03470 at 733.594 kb on - strand, within DZA65_RS03470 at 733.675 kb on + strand at 733.675 kb on + strand at 733.778 kb on + strand at 733.778 kb on + strand at 733.778 kb on + strand at 733.779 kb on - strand at 733.779 kb on - strand at 733.779 kb on - strand at 733.842 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.859 kb on + strand, within DZA65_RS03475 at 733.860 kb on - strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.878 kb on + strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.879 kb on - strand, within DZA65_RS03475 at 733.882 kb on + strand at 733.882 kb on + strand, within DZA65_RS03475 at 733.883 kb on - strand, within DZA65_RS03475 at 733.883 kb on - strand, within DZA65_RS03475 at 733.920 kb on + strand, within DZA65_RS03475 at 733.945 kb on + strand, within DZA65_RS03475 at 734.038 kb on - strand, within DZA65_RS03475 at 734.155 kb on - strand, within DZA65_RS03475 at 734.202 kb on - strand, within DZA65_RS03475 at 734.253 kb on + strand at 734.253 kb on + strand at 734.254 kb on - strand at 734.254 kb on - strand at 734.254 kb on - strand at 734.282 kb on + strand at 734.283 kb on - strand at 734.283 kb on - strand at 734.290 kb on + strand at 734.290 kb on + strand at 734.290 kb on + strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.291 kb on - strand at 734.316 kb on + strand at 734.316 kb on + strand at 734.317 kb on - strand at 734.339 kb on + strand at 734.352 kb on + strand at 734.353 kb on - strand at 734.365 kb on + strand at 734.365 kb on + strand at 734.411 kb on + strand at 734.420 kb on + strand at 734.421 kb on - strand at 734.495 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.507 kb on + strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.508 kb on - strand at 734.546 kb on + strand at 734.547 kb on - strand at 734.547 kb on - strand at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.578 kb on + strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.579 kb on - strand, within DZA65_RS03480 at 734.583 kb on + strand, within DZA65_RS03480 at 734.584 kb on - strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.585 kb on + strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.586 kb on - strand, within DZA65_RS03480 at 734.604 kb on + strand, within DZA65_RS03480 at 734.604 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.606 kb on + strand, within DZA65_RS03480 at 734.814 kb on - strand, within DZA65_RS03480 at 734.921 kb on + strand, within DZA65_RS03480 at 734.921 kb on + strand, within DZA65_RS03480 at 734.922 kb on - strand, within DZA65_RS03480 at 734.922 kb on - strand, within DZA65_RS03480 at 734.934 kb on - strand, within DZA65_RS03480 at 734.934 kb on - strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.948 kb on + strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.949 kb on - strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.960 kb on + strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 734.961 kb on - strand, within DZA65_RS03480 at 735.091 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.101 kb on + strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.102 kb on - strand, within DZA65_RS03480 at 735.257 kb on + strand, within DZA65_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 732,832 + +2.1 732,843 + -0.0 732,843 + +1.3 732,843 + +0.7 732,844 - -0.1 732,844 - -1.0 732,844 - +0.6 732,844 - -1.2 732,844 - -0.0 732,863 + -0.5 732,863 + +0.6 732,863 + -0.1 732,864 - +0.2 732,864 - -1.1 732,866 + +0.0 732,866 + -0.3 732,866 + -0.6 732,866 + +0.4 732,867 - +0.5 732,867 - -0.3 732,879 - +1.0 732,888 + +0.2 732,889 - +0.9 732,902 - -0.2 732,904 + +0.5 732,904 + +0.2 732,905 - +0.6 732,907 + -0.8 732,908 - +0.3 732,925 + +0.3 732,925 + +0.4 732,925 + -0.3 732,930 + +0.7 732,931 - -1.3 732,936 + -1.4 732,936 + -0.0 732,936 + +0.2 732,936 + +1.0 732,936 + +0.8 732,936 + -1.8 732,937 - -0.4 732,975 + +0.1 732,975 + +0.8 732,976 - -0.3 733,022 + -1.5 733,022 + +0.1 733,093 - DZA65_RS03465 0.35 -1.0 733,093 - DZA65_RS03465 0.35 -2.3 733,238 + DZA65_RS03465 0.90 -1.8 733,238 + DZA65_RS03465 0.90 -0.8 733,238 + DZA65_RS03465 0.90 -1.2 733,239 - +0.8 733,268 + +0.7 733,268 + -1.8 733,275 - -0.7 733,496 + DZA65_RS03470 0.58 -0.9 733,496 + DZA65_RS03470 0.58 +0.5 733,496 + DZA65_RS03470 0.58 +0.6 733,496 + DZA65_RS03470 0.58 -0.7 733,496 + DZA65_RS03470 0.58 +0.2 733,497 - DZA65_RS03470 0.58 -1.2 733,497 - DZA65_RS03470 0.58 +0.7 733,497 - DZA65_RS03470 0.58 -0.9 733,497 - DZA65_RS03470 0.58 -1.5 733,497 - DZA65_RS03470 0.58 -1.7 733,593 + DZA65_RS03470 0.80 +0.2 733,593 + DZA65_RS03470 0.80 +0.6 733,594 - DZA65_RS03470 0.81 -0.3 733,675 + -0.5 733,675 + +1.5 733,778 + +1.0 733,778 + +0.7 733,778 + -0.2 733,779 - -0.1 733,779 - -0.5 733,779 - +1.7 733,842 + DZA65_RS03475 0.13 +0.9 733,859 + DZA65_RS03475 0.17 +0.3 733,859 + DZA65_RS03475 0.17 +1.5 733,859 + DZA65_RS03475 0.17 -0.5 733,860 - DZA65_RS03475 0.17 +0.9 733,878 + DZA65_RS03475 0.20 +0.1 733,878 + DZA65_RS03475 0.20 +0.2 733,878 + DZA65_RS03475 0.20 +2.1 733,878 + DZA65_RS03475 0.20 -0.4 733,878 + DZA65_RS03475 0.20 -1.6 733,878 + DZA65_RS03475 0.20 -0.1 733,879 - DZA65_RS03475 0.21 -1.1 733,879 - DZA65_RS03475 0.21 -0.9 733,879 - DZA65_RS03475 0.21 -0.2 733,882 + +0.5 733,882 + DZA65_RS03475 0.21 +0.2 733,883 - DZA65_RS03475 0.21 +0.5 733,883 - DZA65_RS03475 0.21 -0.9 733,920 + DZA65_RS03475 0.29 -0.0 733,945 + DZA65_RS03475 0.33 -0.6 734,038 - DZA65_RS03475 0.51 -0.4 734,155 - DZA65_RS03475 0.74 -1.8 734,202 - DZA65_RS03475 0.83 -0.1 734,253 + -0.4 734,253 + -1.3 734,254 - +0.1 734,254 - +1.1 734,254 - -1.2 734,282 + -0.7 734,283 - -0.1 734,283 - -2.1 734,290 + +0.0 734,290 + -0.1 734,290 + +0.7 734,291 - -0.4 734,291 - +1.2 734,291 - -0.3 734,291 - +0.4 734,291 - +0.1 734,316 + +0.6 734,316 + -0.7 734,317 - -1.1 734,339 + +1.6 734,352 + +0.4 734,353 - -1.9 734,365 + -0.1 734,365 + -0.3 734,411 + +0.5 734,420 + -0.3 734,421 - +0.1 734,495 + +1.9 734,507 + +0.3 734,507 + -0.1 734,507 + +0.8 734,507 + +0.7 734,507 + -0.2 734,508 - -0.3 734,508 - +0.7 734,508 - +0.1 734,508 - +0.5 734,508 - +0.3 734,508 - +0.3 734,508 - -0.6 734,508 - +0.1 734,508 - -0.2 734,508 - -0.7 734,508 - +0.6 734,508 - +0.6 734,546 + -0.0 734,547 - +0.8 734,547 - -0.7 734,578 + DZA65_RS03480 0.12 -1.3 734,578 + DZA65_RS03480 0.12 +0.1 734,578 + DZA65_RS03480 0.12 -1.5 734,578 + DZA65_RS03480 0.12 +0.5 734,578 + DZA65_RS03480 0.12 +0.8 734,578 + DZA65_RS03480 0.12 +0.6 734,578 + DZA65_RS03480 0.12 -0.4 734,579 - DZA65_RS03480 0.12 -0.1 734,579 - DZA65_RS03480 0.12 +0.9 734,579 - DZA65_RS03480 0.12 +2.5 734,583 + DZA65_RS03480 0.12 +1.3 734,584 - DZA65_RS03480 0.12 +0.1 734,585 + DZA65_RS03480 0.13 -0.3 734,585 + DZA65_RS03480 0.13 -2.3 734,585 + DZA65_RS03480 0.13 -1.0 734,585 + DZA65_RS03480 0.13 +1.2 734,586 - DZA65_RS03480 0.13 -0.2 734,586 - DZA65_RS03480 0.13 +0.3 734,586 - DZA65_RS03480 0.13 -0.6 734,604 + DZA65_RS03480 0.14 -0.4 734,604 + DZA65_RS03480 0.14 -0.8 734,606 + DZA65_RS03480 0.14 +0.5 734,606 + DZA65_RS03480 0.14 -0.0 734,606 + DZA65_RS03480 0.14 -0.7 734,814 - DZA65_RS03480 0.30 +0.5 734,921 + DZA65_RS03480 0.38 -0.7 734,921 + DZA65_RS03480 0.38 +0.3 734,922 - DZA65_RS03480 0.38 +0.6 734,922 - DZA65_RS03480 0.38 +0.1 734,934 - DZA65_RS03480 0.39 -0.2 734,934 - DZA65_RS03480 0.39 +0.2 734,948 + DZA65_RS03480 0.40 +0.2 734,948 + DZA65_RS03480 0.40 +0.5 734,948 + DZA65_RS03480 0.40 +0.8 734,949 - DZA65_RS03480 0.40 -0.3 734,949 - DZA65_RS03480 0.40 -0.3 734,949 - DZA65_RS03480 0.40 +0.7 734,949 - DZA65_RS03480 0.40 -0.0 734,949 - DZA65_RS03480 0.40 -0.2 734,960 + DZA65_RS03480 0.41 -1.0 734,960 + DZA65_RS03480 0.41 +0.6 734,960 + DZA65_RS03480 0.41 -1.1 734,960 + DZA65_RS03480 0.41 +0.1 734,960 + DZA65_RS03480 0.41 +0.8 734,960 + DZA65_RS03480 0.41 -2.3 734,961 - DZA65_RS03480 0.41 +0.4 734,961 - DZA65_RS03480 0.41 +0.7 734,961 - DZA65_RS03480 0.41 -0.5 734,961 - DZA65_RS03480 0.41 +0.0 735,091 + DZA65_RS03480 0.51 -1.6 735,101 + DZA65_RS03480 0.51 -1.3 735,101 + DZA65_RS03480 0.51 +0.6 735,101 + DZA65_RS03480 0.51 +0.1 735,102 - DZA65_RS03480 0.52 -0.1 735,102 - DZA65_RS03480 0.52 -1.3 735,257 + DZA65_RS03480 0.63 -0.2
Or see this region's nucleotide sequence