Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03315 and DZA65_RS03320 are separated by 99 nucleotides DZA65_RS03320 and DZA65_RS03325 are separated by 122 nucleotides DZA65_RS03325 and DZA65_RS03330 are separated by 1 nucleotides DZA65_RS03330 and DZA65_RS03335 overlap by 1 nucleotides
DZA65_RS03315: DZA65_RS03315 - phosphopentomutase, at 702,220 to 703,443
_RS03315
DZA65_RS03320: DZA65_RS03320 - purine-nucleoside phosphorylase, at 703,543 to 704,268
_RS03320
DZA65_RS03325: DZA65_RS03325 - ATP-grasp domain-containing protein, at 704,391 to 705,629
_RS03325
DZA65_RS03330: DZA65_RS03330 - EamA family transporter, at 705,631 to 706,563
_RS03330
DZA65_RS03335: DZA65_RS03335 - YggS family pyridoxal phosphate-dependent enzyme, at 706,563 to 707,222
_RS03335
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 703.465 kb on - strand at 703.492 kb on - strand at 703.493 kb on + strand at 703.493 kb on + strand at 703.493 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.496 kb on - strand at 703.496 kb on - strand at 703.496 kb on - strand at 703.548 kb on + strand at 703.549 kb on - strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.558 kb on - strand at 703.558 kb on - strand at 703.624 kb on + strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.700 kb on - strand, within DZA65_RS03320 at 703.759 kb on + strand, within DZA65_RS03320 at 703.759 kb on + strand, within DZA65_RS03320 at 704.023 kb on + strand, within DZA65_RS03320 at 704.024 kb on - strand, within DZA65_RS03320 at 704.024 kb on - strand, within DZA65_RS03320 at 704.062 kb on + strand, within DZA65_RS03320 at 704.101 kb on + strand, within DZA65_RS03320 at 704.102 kb on - strand, within DZA65_RS03320 at 704.128 kb on - strand, within DZA65_RS03320 at 704.309 kb on + strand at 704.309 kb on + strand at 704.310 kb on - strand at 704.364 kb on + strand at 704.373 kb on + strand at 704.374 kb on - strand at 704.377 kb on + strand at 704.397 kb on + strand at 704.398 kb on - strand at 704.437 kb on + strand at 704.437 kb on + strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.476 kb on + strand at 704.476 kb on + strand at 704.477 kb on - strand at 704.480 kb on + strand at 704.480 kb on + strand at 704.481 kb on - strand at 704.481 kb on - strand at 704.483 kb on + strand at 704.483 kb on + strand at 704.484 kb on - strand at 704.539 kb on + strand, within DZA65_RS03325 at 704.540 kb on - strand, within DZA65_RS03325 at 704.658 kb on - strand, within DZA65_RS03325 at 704.713 kb on - strand, within DZA65_RS03325 at 704.769 kb on + strand, within DZA65_RS03325 at 704.817 kb on - strand, within DZA65_RS03325 at 704.882 kb on + strand, within DZA65_RS03325 at 704.883 kb on - strand, within DZA65_RS03325 at 704.884 kb on + strand, within DZA65_RS03325 at 704.885 kb on - strand, within DZA65_RS03325 at 704.949 kb on - strand, within DZA65_RS03325 at 705.064 kb on - strand, within DZA65_RS03325 at 705.226 kb on - strand, within DZA65_RS03325 at 705.374 kb on + strand, within DZA65_RS03325 at 705.452 kb on + strand, within DZA65_RS03325 at 705.493 kb on + strand, within DZA65_RS03325 at 705.511 kb on + strand at 705.512 kb on - strand at 705.542 kb on + strand at 705.542 kb on + strand at 705.543 kb on - strand at 705.543 kb on - strand at 705.549 kb on + strand at 705.578 kb on + strand at 705.584 kb on + strand at 705.785 kb on - strand, within DZA65_RS03330 at 705.799 kb on + strand, within DZA65_RS03330 at 705.799 kb on + strand, within DZA65_RS03330 at 705.799 kb on + strand, within DZA65_RS03330 at 705.799 kb on + strand, within DZA65_RS03330 at 705.800 kb on - strand, within DZA65_RS03330 at 705.841 kb on - strand, within DZA65_RS03330 at 705.844 kb on + strand, within DZA65_RS03330 at 705.845 kb on - strand, within DZA65_RS03330 at 705.847 kb on - strand, within DZA65_RS03330 at 705.847 kb on - strand, within DZA65_RS03330 at 705.913 kb on - strand, within DZA65_RS03330 at 705.918 kb on + strand, within DZA65_RS03330 at 705.919 kb on - strand, within DZA65_RS03330 at 705.919 kb on - strand, within DZA65_RS03330 at 705.940 kb on + strand, within DZA65_RS03330 at 705.956 kb on - strand, within DZA65_RS03330 at 706.039 kb on + strand, within DZA65_RS03330 at 706.097 kb on - strand, within DZA65_RS03330 at 706.138 kb on + strand, within DZA65_RS03330 at 706.219 kb on + strand, within DZA65_RS03330 at 706.221 kb on + strand, within DZA65_RS03330 at 706.222 kb on - strand, within DZA65_RS03330 at 706.222 kb on - strand, within DZA65_RS03330 at 706.226 kb on - strand, within DZA65_RS03330 at 706.226 kb on - strand, within DZA65_RS03330 at 706.226 kb on - strand, within DZA65_RS03330 at 706.231 kb on + strand, within DZA65_RS03330 at 706.279 kb on + strand, within DZA65_RS03330 at 706.298 kb on - strand, within DZA65_RS03330 at 706.345 kb on + strand, within DZA65_RS03330 at 706.346 kb on - strand, within DZA65_RS03330 at 706.392 kb on + strand, within DZA65_RS03330 at 706.415 kb on - strand, within DZA65_RS03330 at 706.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 703,465 - -1.1 703,492 - -0.3 703,493 + -1.5 703,493 + -1.1 703,493 + +0.5 703,495 + +0.2 703,495 + -0.2 703,495 + +0.1 703,495 + -0.2 703,495 + -0.1 703,495 + -0.7 703,495 + +0.7 703,495 + -1.0 703,496 - -2.1 703,496 - +1.2 703,496 - -0.3 703,548 + -0.8 703,549 - -1.0 703,557 + -0.7 703,557 + -0.1 703,557 + +1.1 703,557 + -2.1 703,557 + +0.1 703,557 + +0.7 703,557 + -0.3 703,557 + -2.1 703,558 - +0.2 703,558 - -1.7 703,624 + DZA65_RS03320 0.11 +0.5 703,625 - DZA65_RS03320 0.11 -0.1 703,625 - DZA65_RS03320 0.11 -2.5 703,625 - DZA65_RS03320 0.11 -2.0 703,700 - DZA65_RS03320 0.22 -1.1 703,759 + DZA65_RS03320 0.30 +0.2 703,759 + DZA65_RS03320 0.30 +0.2 704,023 + DZA65_RS03320 0.66 -1.1 704,024 - DZA65_RS03320 0.66 +0.5 704,024 - DZA65_RS03320 0.66 +1.5 704,062 + DZA65_RS03320 0.71 -0.2 704,101 + DZA65_RS03320 0.77 -0.7 704,102 - DZA65_RS03320 0.77 +0.3 704,128 - DZA65_RS03320 0.81 -1.1 704,309 + +0.6 704,309 + +0.1 704,310 - -0.1 704,364 + -1.5 704,373 + -1.0 704,374 - +1.6 704,377 + +0.5 704,397 + -1.3 704,398 - -2.3 704,437 + -1.3 704,437 + -0.8 704,438 - -1.1 704,438 - -0.0 704,438 - -0.5 704,438 - +0.2 704,438 - +0.8 704,476 + -0.3 704,476 + +0.2 704,477 - +1.1 704,480 + +0.1 704,480 + -0.3 704,481 - -0.8 704,481 - -0.3 704,483 + +0.3 704,483 + +0.5 704,484 - -2.5 704,539 + DZA65_RS03325 0.12 -1.0 704,540 - DZA65_RS03325 0.12 -0.6 704,658 - DZA65_RS03325 0.22 +0.3 704,713 - DZA65_RS03325 0.26 -0.4 704,769 + DZA65_RS03325 0.31 +0.5 704,817 - DZA65_RS03325 0.34 -0.4 704,882 + DZA65_RS03325 0.40 -1.0 704,883 - DZA65_RS03325 0.40 +0.2 704,884 + DZA65_RS03325 0.40 -0.0 704,885 - DZA65_RS03325 0.40 +0.2 704,949 - DZA65_RS03325 0.45 -0.2 705,064 - DZA65_RS03325 0.54 -1.7 705,226 - DZA65_RS03325 0.67 -0.4 705,374 + DZA65_RS03325 0.79 -0.5 705,452 + DZA65_RS03325 0.86 -0.1 705,493 + DZA65_RS03325 0.89 +1.2 705,511 + -0.9 705,512 - +0.5 705,542 + -0.3 705,542 + +0.3 705,543 - +0.3 705,543 - -0.8 705,549 + +0.9 705,578 + +1.1 705,584 + -0.5 705,785 - DZA65_RS03330 0.17 -0.3 705,799 + DZA65_RS03330 0.18 +2.2 705,799 + DZA65_RS03330 0.18 +1.1 705,799 + DZA65_RS03330 0.18 +0.4 705,799 + DZA65_RS03330 0.18 -0.1 705,800 - DZA65_RS03330 0.18 -0.4 705,841 - DZA65_RS03330 0.23 -0.3 705,844 + DZA65_RS03330 0.23 +0.7 705,845 - DZA65_RS03330 0.23 -0.4 705,847 - DZA65_RS03330 0.23 +0.5 705,847 - DZA65_RS03330 0.23 -0.0 705,913 - DZA65_RS03330 0.30 +0.6 705,918 + DZA65_RS03330 0.31 +0.7 705,919 - DZA65_RS03330 0.31 +0.5 705,919 - DZA65_RS03330 0.31 +1.0 705,940 + DZA65_RS03330 0.33 -1.8 705,956 - DZA65_RS03330 0.35 +0.9 706,039 + DZA65_RS03330 0.44 +0.7 706,097 - DZA65_RS03330 0.50 +0.3 706,138 + DZA65_RS03330 0.54 +0.5 706,219 + DZA65_RS03330 0.63 +1.2 706,221 + DZA65_RS03330 0.63 +0.3 706,222 - DZA65_RS03330 0.63 -1.1 706,222 - DZA65_RS03330 0.63 -2.2 706,226 - DZA65_RS03330 0.64 -0.8 706,226 - DZA65_RS03330 0.64 +0.5 706,226 - DZA65_RS03330 0.64 -1.8 706,231 + DZA65_RS03330 0.64 -1.8 706,279 + DZA65_RS03330 0.69 +0.0 706,298 - DZA65_RS03330 0.71 +0.1 706,345 + DZA65_RS03330 0.77 -0.3 706,346 - DZA65_RS03330 0.77 -0.5 706,392 + DZA65_RS03330 0.82 -2.5 706,415 - DZA65_RS03330 0.84 +1.1 706,507 - -0.2
Or see this region's nucleotide sequence