Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22800 and DZA65_RS02800 are separated by 490 nucleotides DZA65_RS02800 and DZA65_RS02805 are separated by 104 nucleotides DZA65_RS02805 and DZA65_RS02810 are separated by 120 nucleotides
DZA65_RS22800: DZA65_RS22800 - hypothetical protein, at 602,617 to 603,207
_RS22800
DZA65_RS02800: DZA65_RS02800 - helix-turn-helix transcriptional regulator, at 603,698 to 603,964
_RS02800
DZA65_RS02805: DZA65_RS02805 - helix-turn-helix transcriptional regulator, at 604,069 to 604,329
_RS02805
DZA65_RS02810: DZA65_RS02810 - transcriptional regulator, at 604,450 to 604,671
_RS02810
Position (kb) 604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 603.146 kb on + strand, within DZA65_RS22800 at 603.147 kb on - strand, within DZA65_RS22800 at 603.166 kb on + strand at 603.185 kb on - strand at 603.245 kb on - strand at 603.247 kb on + strand at 603.288 kb on + strand at 603.293 kb on - strand at 603.367 kb on + strand at 603.394 kb on + strand at 603.395 kb on - strand at 603.395 kb on - strand at 603.442 kb on + strand at 603.450 kb on - strand at 603.506 kb on - strand at 603.527 kb on - strand at 603.527 kb on - strand at 603.616 kb on - strand at 603.636 kb on + strand at 603.637 kb on - strand at 603.686 kb on - strand at 603.687 kb on + strand at 603.688 kb on - strand at 603.770 kb on - strand, within DZA65_RS02800 at 603.772 kb on - strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.860 kb on + strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.932 kb on + strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.964 kb on + strand at 603.964 kb on + strand at 603.964 kb on + strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.986 kb on - strand at 603.992 kb on - strand at 604.006 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.056 kb on + strand at 604.056 kb on + strand at 604.057 kb on - strand at 604.094 kb on + strand at 604.094 kb on + strand at 604.095 kb on - strand, within DZA65_RS02805 at 604.129 kb on + strand, within DZA65_RS02805 at 604.130 kb on - strand, within DZA65_RS02805 at 604.137 kb on - strand, within DZA65_RS02805 at 604.142 kb on + strand, within DZA65_RS02805 at 604.143 kb on - strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.159 kb on - strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.205 kb on - strand, within DZA65_RS02805 at 604.217 kb on + strand, within DZA65_RS02805 at 604.334 kb on + strand at 604.334 kb on + strand at 604.334 kb on + strand at 604.334 kb on + strand at 604.335 kb on - strand at 604.335 kb on - strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.361 kb on + strand at 604.362 kb on - strand at 604.378 kb on + strand at 604.418 kb on + strand at 604.418 kb on + strand at 604.418 kb on + strand at 604.419 kb on - strand at 604.419 kb on - strand at 604.429 kb on + strand at 604.430 kb on - strand at 604.436 kb on + strand at 604.437 kb on - strand at 604.479 kb on + strand, within DZA65_RS02810 at 604.584 kb on + strand, within DZA65_RS02810 at 604.584 kb on + strand, within DZA65_RS02810 at 604.674 kb on + strand at 604.675 kb on - strand at 604.751 kb on - strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.800 kb on + strand at 604.800 kb on + strand at 604.801 kb on - strand at 604.825 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.937 kb on - strand at 604.937 kb on - strand at 604.989 kb on + strand at 604.990 kb on - strand at 604.990 kb on - strand at 605.073 kb on - strand at 605.091 kb on + strand at 605.092 kb on - strand at 605.113 kb on + strand at 605.113 kb on + strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.145 kb on - strand at 605.162 kb on + strand at 605.163 kb on - strand at 605.163 kb on - strand at 605.207 kb on + strand at 605.207 kb on + strand at 605.208 kb on - strand at 605.208 kb on - strand at 605.263 kb on + strand at 605.263 kb on + strand at 605.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 603,146 + DZA65_RS22800 0.90 -0.8 603,147 - DZA65_RS22800 0.90 -0.4 603,166 + +0.1 603,185 - -0.9 603,245 - -1.6 603,247 + -1.1 603,288 + -0.1 603,293 - +0.1 603,367 + -0.7 603,394 + -0.7 603,395 - +0.4 603,395 - -0.5 603,442 + +0.7 603,450 - -0.0 603,506 - -0.2 603,527 - +0.0 603,527 - -1.4 603,616 - +1.5 603,636 + -0.9 603,637 - +0.4 603,686 - +0.4 603,687 + -1.3 603,688 - -0.3 603,770 - DZA65_RS02800 0.27 -0.5 603,772 - DZA65_RS02800 0.28 +0.8 603,793 + DZA65_RS02800 0.36 -0.5 603,793 + DZA65_RS02800 0.36 +0.1 603,839 + DZA65_RS02800 0.53 -0.5 603,839 + DZA65_RS02800 0.53 +1.3 603,840 - DZA65_RS02800 0.53 +1.3 603,840 - DZA65_RS02800 0.53 +1.4 603,860 + DZA65_RS02800 0.61 +0.3 603,900 - DZA65_RS02800 0.76 -1.5 603,900 - DZA65_RS02800 0.76 -1.1 603,932 + DZA65_RS02800 0.88 -0.1 603,933 - DZA65_RS02800 0.88 +0.8 603,933 - DZA65_RS02800 0.88 -2.1 603,933 - DZA65_RS02800 0.88 +1.2 603,964 + -0.2 603,964 + +0.1 603,964 + +0.6 603,965 - -0.1 603,965 - -0.5 603,965 - -0.0 603,965 - -0.1 603,965 - -0.4 603,986 - +2.1 603,992 - +0.0 604,006 + -0.4 604,011 + -1.4 604,011 + +1.1 604,011 + -0.8 604,011 + +0.3 604,011 + +0.2 604,012 - +0.7 604,012 - -1.5 604,056 + +0.2 604,056 + +0.7 604,057 - +0.3 604,094 + +0.4 604,094 + +1.3 604,095 - DZA65_RS02805 0.10 -0.8 604,129 + DZA65_RS02805 0.23 -2.0 604,130 - DZA65_RS02805 0.23 -0.3 604,137 - DZA65_RS02805 0.26 -0.3 604,142 + DZA65_RS02805 0.28 -0.0 604,143 - DZA65_RS02805 0.28 -1.0 604,158 + DZA65_RS02805 0.34 -0.6 604,158 + DZA65_RS02805 0.34 -0.2 604,159 - DZA65_RS02805 0.34 -1.1 604,204 + DZA65_RS02805 0.52 -2.3 604,204 + DZA65_RS02805 0.52 -0.9 604,204 + DZA65_RS02805 0.52 -0.8 604,204 + DZA65_RS02805 0.52 +0.2 604,204 + +0.1 604,204 + DZA65_RS02805 0.52 +0.0 604,204 + DZA65_RS02805 0.52 -0.7 604,204 + DZA65_RS02805 0.52 +0.4 604,205 - DZA65_RS02805 0.52 -0.1 604,217 + DZA65_RS02805 0.57 -0.0 604,334 + -0.1 604,334 + +1.5 604,334 + +0.1 604,334 + -0.1 604,335 - +3.8 604,335 - +0.7 604,351 + -0.7 604,351 + +0.5 604,351 + -0.2 604,351 + -0.8 604,351 + +2.0 604,351 + -1.5 604,351 + +0.3 604,352 - -1.4 604,352 - +0.5 604,352 - +0.7 604,352 - +0.4 604,352 - +0.1 604,352 - +0.6 604,361 + -0.7 604,362 - -1.5 604,378 + +0.9 604,418 + -0.1 604,418 + +1.7 604,418 + -1.8 604,419 - +1.5 604,419 - -0.6 604,429 + -2.8 604,430 - +0.6 604,436 + +0.3 604,437 - -0.2 604,479 + DZA65_RS02810 0.13 -0.5 604,584 + DZA65_RS02810 0.60 -0.7 604,584 + DZA65_RS02810 0.60 +0.1 604,674 + +0.3 604,675 - +0.6 604,751 - -0.4 604,797 + +1.1 604,797 + +2.5 604,797 + +0.6 604,797 + -1.4 604,798 - +1.0 604,798 - +0.9 604,798 - -1.1 604,798 - +3.3 604,798 - +1.3 604,800 + +0.1 604,800 + +1.7 604,801 - -0.6 604,825 + +0.1 604,850 + -1.5 604,850 + -0.1 604,850 + -1.1 604,851 - +1.5 604,851 - +0.9 604,851 - +0.4 604,851 - +1.8 604,851 - +0.4 604,851 - -0.5 604,851 - +0.0 604,851 - -0.9 604,865 + -1.3 604,865 + +2.3 604,865 + -1.5 604,865 + -0.4 604,937 - +0.7 604,937 - +0.8 604,989 + -0.4 604,990 - +1.2 604,990 - -1.8 605,073 - +0.5 605,091 + -0.2 605,092 - +0.6 605,113 + +1.8 605,113 + +0.5 605,114 - -0.5 605,114 - +0.2 605,114 - +0.3 605,114 - -0.7 605,145 - -0.9 605,162 + +0.2 605,163 - +0.8 605,163 - -2.1 605,207 + -0.3 605,207 + -0.3 605,208 - +0.3 605,208 - -0.2 605,263 + -0.3 605,263 + -1.0 605,264 - +1.0
Or see this region's nucleotide sequence