Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02675 and DZA65_RS02680 are separated by 140 nucleotides DZA65_RS02680 and DZA65_RS02685 are separated by 69 nucleotides DZA65_RS02685 and DZA65_RS02690 are separated by 29 nucleotides
DZA65_RS02675: DZA65_RS02675 - Gfo/Idh/MocA family oxidoreductase, at 573,823 to 574,974
_RS02675
DZA65_RS02680: DZA65_RS02680 - heavy metal translocating P-type ATPase, at 575,115 to 577,451
_RS02680
DZA65_RS02685: DZA65_RS02685 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 577,521 to 577,952
_RS02685
DZA65_RS02690: DZA65_RS02690 - LacI family DNA-binding transcriptional regulator, at 577,982 to 579,004
_RS02690
Position (kb) 575
576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 574.194 kb on - strand, within DZA65_RS02675 at 574.202 kb on - strand, within DZA65_RS02675 at 574.214 kb on - strand, within DZA65_RS02675 at 574.214 kb on - strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.261 kb on - strand, within DZA65_RS02675 at 574.261 kb on - strand, within DZA65_RS02675 at 574.284 kb on + strand, within DZA65_RS02675 at 574.285 kb on - strand, within DZA65_RS02675 at 574.295 kb on - strand, within DZA65_RS02675 at 574.295 kb on - strand, within DZA65_RS02675 at 574.311 kb on + strand, within DZA65_RS02675 at 574.312 kb on - strand, within DZA65_RS02675 at 574.331 kb on - strand, within DZA65_RS02675 at 574.339 kb on + strand, within DZA65_RS02675 at 574.339 kb on + strand, within DZA65_RS02675 at 574.340 kb on - strand, within DZA65_RS02675 at 574.340 kb on - strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.388 kb on - strand, within DZA65_RS02675 at 574.388 kb on - strand, within DZA65_RS02675 at 574.498 kb on + strand, within DZA65_RS02675 at 574.498 kb on + strand, within DZA65_RS02675 at 574.506 kb on + strand, within DZA65_RS02675 at 574.506 kb on + strand, within DZA65_RS02675 at 574.507 kb on - strand, within DZA65_RS02675 at 574.507 kb on - strand, within DZA65_RS02675 at 574.588 kb on + strand at 574.588 kb on + strand, within DZA65_RS02675 at 574.588 kb on + strand, within DZA65_RS02675 at 574.588 kb on + strand, within DZA65_RS02675 at 574.589 kb on - strand, within DZA65_RS02675 at 574.589 kb on - strand, within DZA65_RS02675 at 574.753 kb on + strand, within DZA65_RS02675 at 574.753 kb on + strand, within DZA65_RS02675 at 574.754 kb on - strand, within DZA65_RS02675 at 574.761 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.791 kb on + strand, within DZA65_RS02675 at 574.791 kb on + strand, within DZA65_RS02675 at 574.994 kb on + strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.117 kb on - strand at 575.117 kb on - strand at 575.148 kb on + strand at 575.149 kb on - strand at 575.200 kb on - strand at 575.200 kb on - strand at 575.312 kb on + strand at 575.313 kb on - strand at 575.313 kb on - strand at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.562 kb on - strand, within DZA65_RS02680 at 575.575 kb on + strand, within DZA65_RS02680 at 575.576 kb on - strand, within DZA65_RS02680 at 575.576 kb on - strand, within DZA65_RS02680 at 575.607 kb on + strand, within DZA65_RS02680 at 575.633 kb on + strand, within DZA65_RS02680 at 575.812 kb on + strand at 575.813 kb on - strand, within DZA65_RS02680 at 575.813 kb on - strand, within DZA65_RS02680 at 576.091 kb on - strand, within DZA65_RS02680 at 576.211 kb on + strand, within DZA65_RS02680 at 576.211 kb on + strand, within DZA65_RS02680 at 576.211 kb on + strand, within DZA65_RS02680 at 576.211 kb on + strand, within DZA65_RS02680 at 576.212 kb on - strand, within DZA65_RS02680 at 576.212 kb on - strand, within DZA65_RS02680 at 576.239 kb on + strand, within DZA65_RS02680 at 576.295 kb on + strand, within DZA65_RS02680 at 576.295 kb on + strand, within DZA65_RS02680 at 576.295 kb on + strand, within DZA65_RS02680 at 576.295 kb on + strand, within DZA65_RS02680 at 576.295 kb on + strand, within DZA65_RS02680 at 576.295 kb on + strand, within DZA65_RS02680 at 576.295 kb on + strand, within DZA65_RS02680 at 576.296 kb on - strand, within DZA65_RS02680 at 576.296 kb on - strand, within DZA65_RS02680 at 576.296 kb on - strand, within DZA65_RS02680 at 576.296 kb on - strand, within DZA65_RS02680 at 576.296 kb on - strand, within DZA65_RS02680 at 576.296 kb on - strand, within DZA65_RS02680 at 576.296 kb on - strand, within DZA65_RS02680 at 576.369 kb on - strand, within DZA65_RS02680 at 576.369 kb on - strand, within DZA65_RS02680 at 576.636 kb on + strand, within DZA65_RS02680 at 576.637 kb on - strand, within DZA65_RS02680 at 577.048 kb on - strand, within DZA65_RS02680 at 577.479 kb on + strand at 577.479 kb on + strand at 577.483 kb on - strand at 577.493 kb on + strand at 577.501 kb on - strand at 577.503 kb on - strand at 577.503 kb on - strand at 577.594 kb on + strand, within DZA65_RS02685 at 577.614 kb on - strand, within DZA65_RS02685 at 577.626 kb on + strand, within DZA65_RS02685 at 577.626 kb on + strand, within DZA65_RS02685 at 577.635 kb on + strand, within DZA65_RS02685 at 577.635 kb on + strand, within DZA65_RS02685 at 577.635 kb on + strand, within DZA65_RS02685 at 577.636 kb on - strand, within DZA65_RS02685 at 577.636 kb on - strand, within DZA65_RS02685 at 577.636 kb on - strand, within DZA65_RS02685 at 577.636 kb on - strand, within DZA65_RS02685 at 577.636 kb on - strand, within DZA65_RS02685 at 577.638 kb on + strand, within DZA65_RS02685 at 577.638 kb on + strand, within DZA65_RS02685 at 577.638 kb on + strand, within DZA65_RS02685 at 577.638 kb on + strand, within DZA65_RS02685 at 577.638 kb on + strand, within DZA65_RS02685 at 577.638 kb on + strand, within DZA65_RS02685 at 577.639 kb on - strand, within DZA65_RS02685 at 577.639 kb on - strand, within DZA65_RS02685 at 577.768 kb on + strand, within DZA65_RS02685 at 577.768 kb on + strand, within DZA65_RS02685 at 577.769 kb on - strand, within DZA65_RS02685 at 577.813 kb on + strand, within DZA65_RS02685 at 577.813 kb on + strand, within DZA65_RS02685 at 577.814 kb on - strand, within DZA65_RS02685 at 577.814 kb on - strand, within DZA65_RS02685 at 577.814 kb on - strand, within DZA65_RS02685 at 577.814 kb on - strand, within DZA65_RS02685 at 577.814 kb on - strand, within DZA65_RS02685 at 577.956 kb on + strand at 577.957 kb on - strand at 578.002 kb on + strand at 578.066 kb on + strand at 578.067 kb on - strand at 578.067 kb on - strand at 578.113 kb on + strand, within DZA65_RS02690 at 578.114 kb on - strand, within DZA65_RS02690 at 578.114 kb on - strand, within DZA65_RS02690 at 578.114 kb on - strand at 578.114 kb on - strand, within DZA65_RS02690 at 578.215 kb on + strand, within DZA65_RS02690
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 574,194 - DZA65_RS02675 0.32 -1.8 574,202 - DZA65_RS02675 0.33 -0.3 574,214 - DZA65_RS02675 0.34 +0.3 574,214 - DZA65_RS02675 0.34 +0.4 574,260 + DZA65_RS02675 0.38 -1.3 574,260 + DZA65_RS02675 0.38 +0.7 574,260 + DZA65_RS02675 0.38 -0.4 574,261 - DZA65_RS02675 0.38 -0.5 574,261 - DZA65_RS02675 0.38 +1.4 574,284 + DZA65_RS02675 0.40 +0.3 574,285 - DZA65_RS02675 0.40 +0.3 574,295 - DZA65_RS02675 0.41 -1.1 574,295 - DZA65_RS02675 0.41 -0.5 574,311 + DZA65_RS02675 0.42 +1.0 574,312 - DZA65_RS02675 0.42 +0.3 574,331 - DZA65_RS02675 0.44 +1.2 574,339 + DZA65_RS02675 0.45 +1.4 574,339 + DZA65_RS02675 0.45 +0.7 574,340 - DZA65_RS02675 0.45 +0.5 574,340 - DZA65_RS02675 0.45 +0.8 574,351 + DZA65_RS02675 0.46 -1.2 574,351 + DZA65_RS02675 0.46 -0.2 574,351 + DZA65_RS02675 0.46 -0.8 574,351 + DZA65_RS02675 0.46 -2.1 574,351 + DZA65_RS02675 0.46 +0.8 574,351 + DZA65_RS02675 0.46 +1.1 574,351 + DZA65_RS02675 0.46 -1.8 574,351 + DZA65_RS02675 0.46 +0.2 574,351 + DZA65_RS02675 0.46 -0.9 574,351 + DZA65_RS02675 0.46 -1.5 574,352 - DZA65_RS02675 0.46 -0.4 574,352 - DZA65_RS02675 0.46 -1.0 574,352 - DZA65_RS02675 0.46 +0.3 574,352 - DZA65_RS02675 0.46 -0.8 574,352 - DZA65_RS02675 0.46 -0.1 574,353 + DZA65_RS02675 0.46 -1.4 574,353 + DZA65_RS02675 0.46 +1.4 574,353 + DZA65_RS02675 0.46 -0.5 574,353 + DZA65_RS02675 0.46 -0.2 574,353 + DZA65_RS02675 0.46 +0.5 574,353 + DZA65_RS02675 0.46 -0.3 574,353 + DZA65_RS02675 0.46 -0.2 574,353 + DZA65_RS02675 0.46 +1.3 574,354 - DZA65_RS02675 0.46 -0.0 574,354 - DZA65_RS02675 0.46 +0.8 574,354 - DZA65_RS02675 0.46 +0.8 574,354 - DZA65_RS02675 0.46 -0.5 574,354 - DZA65_RS02675 0.46 -1.0 574,354 - DZA65_RS02675 0.46 -2.3 574,354 - +0.5 574,354 - DZA65_RS02675 0.46 -0.7 574,354 - DZA65_RS02675 0.46 -0.7 574,354 - DZA65_RS02675 0.46 -0.7 574,354 - DZA65_RS02675 0.46 +0.3 574,388 - DZA65_RS02675 0.49 -2.1 574,388 - DZA65_RS02675 0.49 +0.0 574,498 + DZA65_RS02675 0.59 -1.6 574,498 + DZA65_RS02675 0.59 -0.5 574,506 + DZA65_RS02675 0.59 +0.8 574,506 + DZA65_RS02675 0.59 -1.0 574,507 - DZA65_RS02675 0.59 +1.4 574,507 - DZA65_RS02675 0.59 -0.3 574,588 + +0.5 574,588 + DZA65_RS02675 0.66 +0.9 574,588 + DZA65_RS02675 0.66 -1.7 574,588 + DZA65_RS02675 0.66 +0.7 574,589 - DZA65_RS02675 0.66 -2.3 574,589 - DZA65_RS02675 0.66 -0.7 574,753 + DZA65_RS02675 0.81 +0.1 574,753 + DZA65_RS02675 0.81 -0.5 574,754 - DZA65_RS02675 0.81 -1.1 574,761 + DZA65_RS02675 0.81 +0.5 574,768 + DZA65_RS02675 0.82 +0.9 574,768 + DZA65_RS02675 0.82 -0.4 574,768 + DZA65_RS02675 0.82 -1.3 574,768 + DZA65_RS02675 0.82 +1.3 574,768 + DZA65_RS02675 0.82 +0.8 574,768 + DZA65_RS02675 0.82 -1.1 574,791 + DZA65_RS02675 0.84 +0.1 574,791 + DZA65_RS02675 0.84 +0.9 574,994 + -0.1 574,995 - +0.1 574,995 - -0.0 574,995 - +0.8 574,995 - +0.0 574,995 - +0.9 575,001 + +0.2 575,001 + +0.3 575,001 + -0.3 575,001 + +0.7 575,001 + +0.6 575,116 + -1.2 575,116 + +0.5 575,116 + -0.6 575,116 + +2.5 575,116 + -0.3 575,116 + -1.1 575,117 - +0.5 575,117 - -0.7 575,148 + -0.3 575,149 - +1.1 575,200 - -0.1 575,200 - +0.3 575,312 + -0.1 575,313 - -0.5 575,313 - +1.2 575,502 + DZA65_RS02680 0.17 -0.5 575,502 + DZA65_RS02680 0.17 +1.5 575,502 + DZA65_RS02680 0.17 -0.5 575,502 + DZA65_RS02680 0.17 -0.5 575,547 + DZA65_RS02680 0.18 +0.5 575,547 + DZA65_RS02680 0.18 -0.9 575,547 + DZA65_RS02680 0.18 -1.8 575,547 + DZA65_RS02680 0.18 +0.1 575,547 + DZA65_RS02680 0.18 -0.2 575,547 + DZA65_RS02680 0.18 +1.5 575,547 + DZA65_RS02680 0.18 +0.0 575,548 - DZA65_RS02680 0.19 -0.4 575,548 - DZA65_RS02680 0.19 +0.0 575,548 - DZA65_RS02680 0.19 -1.2 575,548 - DZA65_RS02680 0.19 -0.5 575,548 - DZA65_RS02680 0.19 -2.0 575,548 - DZA65_RS02680 0.19 -0.3 575,548 - DZA65_RS02680 0.19 -1.2 575,562 - DZA65_RS02680 0.19 +0.3 575,575 + DZA65_RS02680 0.20 -0.9 575,576 - DZA65_RS02680 0.20 -1.1 575,576 - DZA65_RS02680 0.20 -1.2 575,607 + DZA65_RS02680 0.21 +1.8 575,633 + DZA65_RS02680 0.22 +0.5 575,812 + +2.1 575,813 - DZA65_RS02680 0.30 -2.3 575,813 - DZA65_RS02680 0.30 +1.2 576,091 - DZA65_RS02680 0.42 -1.1 576,211 + DZA65_RS02680 0.47 +0.5 576,211 + DZA65_RS02680 0.47 -0.0 576,211 + DZA65_RS02680 0.47 +0.5 576,211 + DZA65_RS02680 0.47 -1.1 576,212 - DZA65_RS02680 0.47 +0.1 576,212 - DZA65_RS02680 0.47 -3.1 576,239 + DZA65_RS02680 0.48 -0.4 576,295 + DZA65_RS02680 0.50 -0.5 576,295 + DZA65_RS02680 0.50 +1.5 576,295 + DZA65_RS02680 0.50 +0.4 576,295 + DZA65_RS02680 0.50 -2.3 576,295 + DZA65_RS02680 0.50 -0.5 576,295 + DZA65_RS02680 0.50 -1.1 576,295 + DZA65_RS02680 0.50 +0.1 576,296 - DZA65_RS02680 0.51 -0.7 576,296 - DZA65_RS02680 0.51 +1.1 576,296 - DZA65_RS02680 0.51 -1.5 576,296 - DZA65_RS02680 0.51 -1.5 576,296 - DZA65_RS02680 0.51 -0.8 576,296 - DZA65_RS02680 0.51 -0.5 576,296 - DZA65_RS02680 0.51 +0.2 576,369 - DZA65_RS02680 0.54 +0.4 576,369 - DZA65_RS02680 0.54 -2.8 576,636 + DZA65_RS02680 0.65 +0.7 576,637 - DZA65_RS02680 0.65 -0.1 577,048 - DZA65_RS02680 0.83 -0.8 577,479 + -0.1 577,479 + +0.9 577,483 - +0.1 577,493 + -0.2 577,501 - -0.3 577,503 - -0.2 577,503 - -1.2 577,594 + DZA65_RS02685 0.17 -0.7 577,614 - DZA65_RS02685 0.22 +0.5 577,626 + DZA65_RS02685 0.24 +0.6 577,626 + DZA65_RS02685 0.24 -2.1 577,635 + DZA65_RS02685 0.26 +0.5 577,635 + DZA65_RS02685 0.26 +1.1 577,635 + DZA65_RS02685 0.26 -0.3 577,636 - DZA65_RS02685 0.27 -0.9 577,636 - DZA65_RS02685 0.27 -1.0 577,636 - DZA65_RS02685 0.27 +0.2 577,636 - DZA65_RS02685 0.27 -0.5 577,636 - DZA65_RS02685 0.27 +0.3 577,638 + DZA65_RS02685 0.27 +1.7 577,638 + DZA65_RS02685 0.27 -0.2 577,638 + DZA65_RS02685 0.27 -2.5 577,638 + DZA65_RS02685 0.27 +0.5 577,638 + DZA65_RS02685 0.27 +0.2 577,638 + DZA65_RS02685 0.27 -0.8 577,639 - DZA65_RS02685 0.27 -0.5 577,639 - DZA65_RS02685 0.27 -0.1 577,768 + DZA65_RS02685 0.57 +0.3 577,768 + DZA65_RS02685 0.57 -1.0 577,769 - DZA65_RS02685 0.57 -0.1 577,813 + DZA65_RS02685 0.68 -0.2 577,813 + DZA65_RS02685 0.68 -1.7 577,814 - DZA65_RS02685 0.68 +0.5 577,814 - DZA65_RS02685 0.68 +0.9 577,814 - DZA65_RS02685 0.68 -0.7 577,814 - DZA65_RS02685 0.68 +0.2 577,814 - DZA65_RS02685 0.68 -0.3 577,956 + -0.7 577,957 - +0.5 578,002 + -1.1 578,066 + -1.1 578,067 - +0.1 578,067 - +0.1 578,113 + DZA65_RS02690 0.13 -0.1 578,114 - DZA65_RS02690 0.13 +0.5 578,114 - DZA65_RS02690 0.13 -0.2 578,114 - +1.8 578,114 - DZA65_RS02690 0.13 +0.4 578,215 + DZA65_RS02690 0.23 -0.5
Or see this region's nucleotide sequence