Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02230 and DZA65_RS02235 are separated by 145 nucleotides DZA65_RS02235 and DZA65_RS02240 are separated by 75 nucleotides DZA65_RS02240 and DZA65_RS02245 are separated by 344 nucleotides
DZA65_RS02230: DZA65_RS02230 - MFS transporter, at 484,632 to 486,026
_RS02230
DZA65_RS02235: DZA65_RS02235 - HNH endonuclease, at 486,172 to 486,549
_RS02235
DZA65_RS02240: DZA65_RS02240 - DeoR/GlpR transcriptional regulator, at 486,625 to 487,416
_RS02240
DZA65_RS02245: DZA65_RS02245 - transketolase, at 487,761 to 488,564
_RS02245
Position (kb) 486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.657 kb on - strand, within DZA65_RS02230 at 485.657 kb on - strand at 485.657 kb on - strand, within DZA65_RS02230 at 485.657 kb on - strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.666 kb on + strand, within DZA65_RS02230 at 485.731 kb on - strand, within DZA65_RS02230 at 485.849 kb on + strand, within DZA65_RS02230 at 486.052 kb on + strand at 486.053 kb on - strand at 486.053 kb on - strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.096 kb on + strand at 486.096 kb on + strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.102 kb on - strand at 486.102 kb on - strand at 486.133 kb on + strand at 486.134 kb on - strand at 486.149 kb on - strand at 486.149 kb on - strand at 486.149 kb on - strand at 486.166 kb on + strand at 486.166 kb on + strand at 486.167 kb on - strand at 486.167 kb on - strand at 486.167 kb on - strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.183 kb on + strand at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.211 kb on - strand, within DZA65_RS02235 at 486.211 kb on - strand, within DZA65_RS02235 at 486.248 kb on + strand, within DZA65_RS02235 at 486.255 kb on + strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.303 kb on - strand, within DZA65_RS02235 at 486.303 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.406 kb on - strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.436 kb on - strand, within DZA65_RS02235 at 486.511 kb on + strand, within DZA65_RS02235 at 486.511 kb on + strand, within DZA65_RS02235 at 486.512 kb on - strand at 486.512 kb on - strand at 486.512 kb on - strand at 486.514 kb on - strand at 486.514 kb on - strand at 486.598 kb on - strand at 486.598 kb on - strand at 486.600 kb on + strand at 486.601 kb on - strand at 486.707 kb on + strand, within DZA65_RS02240 at 486.714 kb on + strand, within DZA65_RS02240 at 486.715 kb on - strand, within DZA65_RS02240 at 486.757 kb on + strand, within DZA65_RS02240 at 486.757 kb on + strand, within DZA65_RS02240 at 486.758 kb on - strand, within DZA65_RS02240 at 486.758 kb on - strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 487.009 kb on - strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.063 kb on - strand, within DZA65_RS02240 at 487.235 kb on + strand, within DZA65_RS02240 at 487.236 kb on - strand, within DZA65_RS02240 at 487.239 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.386 kb on + strand at 487.633 kb on + strand at 487.634 kb on - strand at 487.634 kb on - strand at 487.657 kb on - strand at 487.757 kb on - strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.769 kb on - strand at 487.769 kb on - strand at 487.769 kb on - strand at 487.806 kb on + strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 488.117 kb on - strand, within DZA65_RS02245 at 488.117 kb on - strand, within DZA65_RS02245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 485,656 + DZA65_RS02230 0.73 -0.1 485,656 + DZA65_RS02230 0.73 +0.5 485,656 + DZA65_RS02230 0.73 +0.5 485,656 + DZA65_RS02230 0.73 -0.4 485,656 + -1.1 485,656 + DZA65_RS02230 0.73 +0.3 485,656 + DZA65_RS02230 0.73 -0.2 485,656 + DZA65_RS02230 0.73 -1.2 485,657 - DZA65_RS02230 0.73 +1.0 485,657 - +0.5 485,657 - DZA65_RS02230 0.73 -0.2 485,657 - DZA65_RS02230 0.73 -1.1 485,663 + DZA65_RS02230 0.74 -0.5 485,663 + DZA65_RS02230 0.74 -2.1 485,663 + DZA65_RS02230 0.74 +1.1 485,663 + DZA65_RS02230 0.74 -0.9 485,663 + DZA65_RS02230 0.74 +0.1 485,663 + DZA65_RS02230 0.74 +0.5 485,663 + DZA65_RS02230 0.74 -2.9 485,664 - DZA65_RS02230 0.74 -0.3 485,664 - DZA65_RS02230 0.74 -0.1 485,664 - DZA65_RS02230 0.74 +1.0 485,664 - DZA65_RS02230 0.74 -0.7 485,664 - DZA65_RS02230 0.74 +0.3 485,666 + DZA65_RS02230 0.74 +0.5 485,731 - DZA65_RS02230 0.79 -0.5 485,849 + DZA65_RS02230 0.87 -0.2 486,052 + -0.9 486,053 - +0.5 486,053 - +0.7 486,094 - -0.1 486,094 - +0.5 486,094 - +0.0 486,096 + +0.6 486,096 + +0.7 486,097 - -2.5 486,097 - -0.5 486,097 - -1.8 486,097 - +0.5 486,097 - -2.3 486,097 - -0.8 486,097 - +1.1 486,097 - +0.1 486,102 - -0.5 486,102 - -0.2 486,133 + -0.8 486,134 - +0.3 486,149 - +0.4 486,149 - -0.4 486,149 - +0.5 486,166 + -0.7 486,166 + +0.2 486,167 - +1.8 486,167 - +0.1 486,167 - -0.1 486,171 + +0.5 486,171 + -1.3 486,171 + +0.5 486,171 + +0.3 486,171 + +0.4 486,171 + +0.2 486,171 + -2.6 486,171 + +1.4 486,171 + -1.1 486,171 + -0.2 486,172 - +1.7 486,172 - +0.5 486,172 - -1.1 486,172 - -2.1 486,172 - +0.2 486,172 - +1.8 486,172 - +0.3 486,172 - +1.2 486,172 - -0.2 486,172 - -1.5 486,175 + +0.5 486,175 + +0.1 486,175 + +0.2 486,175 + +1.4 486,175 + -0.6 486,175 + -0.5 486,176 - +0.4 486,176 - +0.2 486,176 - -0.1 486,176 - -0.2 486,176 - +0.1 486,176 - +0.1 486,183 + +0.6 486,210 + DZA65_RS02235 0.10 +0.3 486,210 + DZA65_RS02235 0.10 -0.3 486,210 + DZA65_RS02235 0.10 +0.8 486,210 + DZA65_RS02235 0.10 +0.4 486,210 + DZA65_RS02235 0.10 +1.9 486,211 - DZA65_RS02235 0.10 +1.2 486,211 - DZA65_RS02235 0.10 -0.1 486,248 + DZA65_RS02235 0.20 +0.3 486,255 + DZA65_RS02235 0.22 +0.8 486,256 - DZA65_RS02235 0.22 -0.0 486,256 - DZA65_RS02235 0.22 +0.0 486,256 - DZA65_RS02235 0.22 -0.6 486,256 - DZA65_RS02235 0.22 +0.5 486,256 - DZA65_RS02235 0.22 -0.8 486,302 + DZA65_RS02235 0.34 +1.2 486,302 + DZA65_RS02235 0.34 -0.4 486,302 + DZA65_RS02235 0.34 +1.2 486,302 + DZA65_RS02235 0.34 -0.2 486,303 - DZA65_RS02235 0.35 +0.1 486,303 - DZA65_RS02235 0.35 -0.3 486,313 - DZA65_RS02235 0.37 -2.0 486,313 - DZA65_RS02235 0.37 +0.2 486,313 - DZA65_RS02235 0.37 +0.6 486,321 + DZA65_RS02235 0.39 -0.6 486,321 + DZA65_RS02235 0.39 -0.6 486,321 + DZA65_RS02235 0.39 -0.8 486,321 + DZA65_RS02235 0.39 -0.5 486,322 - DZA65_RS02235 0.40 -1.2 486,322 - DZA65_RS02235 0.40 -0.2 486,322 - DZA65_RS02235 0.40 -0.3 486,322 - DZA65_RS02235 0.40 +0.0 486,322 - DZA65_RS02235 0.40 -0.6 486,322 - DZA65_RS02235 0.40 +0.0 486,322 - DZA65_RS02235 0.40 -0.8 486,322 - DZA65_RS02235 0.40 -0.3 486,402 + DZA65_RS02235 0.61 -0.1 486,402 + DZA65_RS02235 0.61 -0.3 486,402 + DZA65_RS02235 0.61 +0.7 486,402 + DZA65_RS02235 0.61 +0.6 486,403 - DZA65_RS02235 0.61 +0.7 486,403 - DZA65_RS02235 0.61 -2.1 486,403 - DZA65_RS02235 0.61 -0.2 486,403 - DZA65_RS02235 0.61 -0.2 486,403 - DZA65_RS02235 0.61 -0.6 486,403 - DZA65_RS02235 0.61 -0.4 486,403 - DZA65_RS02235 0.61 -0.4 486,406 - DZA65_RS02235 0.62 +0.3 486,435 + DZA65_RS02235 0.70 -0.2 486,435 + DZA65_RS02235 0.70 +0.1 486,435 + DZA65_RS02235 0.70 +0.7 486,435 + DZA65_RS02235 0.70 -0.3 486,436 - DZA65_RS02235 0.70 -2.1 486,511 + DZA65_RS02235 0.90 -2.1 486,511 + DZA65_RS02235 0.90 -0.0 486,512 - +1.4 486,512 - +0.5 486,512 - +0.6 486,514 - -0.5 486,514 - +1.5 486,598 - +0.7 486,598 - +0.4 486,600 + +0.5 486,601 - +0.0 486,707 + DZA65_RS02240 0.10 -0.1 486,714 + DZA65_RS02240 0.11 -1.7 486,715 - DZA65_RS02240 0.11 +0.0 486,757 + DZA65_RS02240 0.17 -0.1 486,757 + DZA65_RS02240 0.17 -0.8 486,758 - DZA65_RS02240 0.17 -1.6 486,758 - DZA65_RS02240 0.17 +2.8 486,782 + DZA65_RS02240 0.20 -2.0 486,782 + DZA65_RS02240 0.20 -0.5 486,782 + DZA65_RS02240 0.20 +0.8 486,783 - DZA65_RS02240 0.20 -1.5 486,783 - DZA65_RS02240 0.20 -0.5 486,783 - DZA65_RS02240 0.20 -0.1 487,009 - DZA65_RS02240 0.48 -0.5 487,062 + DZA65_RS02240 0.55 -0.2 487,062 + DZA65_RS02240 0.55 -1.7 487,062 + DZA65_RS02240 0.55 -1.9 487,063 - DZA65_RS02240 0.55 +0.3 487,235 + DZA65_RS02240 0.77 -1.5 487,236 - DZA65_RS02240 0.77 +0.4 487,239 - DZA65_RS02240 0.78 +0.4 487,251 - DZA65_RS02240 0.79 +0.2 487,251 - DZA65_RS02240 0.79 +0.5 487,251 - DZA65_RS02240 0.79 -0.6 487,251 - DZA65_RS02240 0.79 +0.4 487,386 + +0.3 487,633 + -0.2 487,634 - -1.2 487,634 - -0.3 487,657 - +1.1 487,757 - -0.3 487,768 + -1.4 487,768 + -2.3 487,768 + -1.6 487,769 - -0.8 487,769 - +0.1 487,769 - -0.9 487,806 + -1.6 487,807 - -0.2 487,807 - +0.6 487,807 - +1.0 487,807 - +0.3 487,875 - DZA65_RS02245 0.14 -0.5 487,875 - DZA65_RS02245 0.14 +1.5 487,875 - DZA65_RS02245 0.14 +2.0 487,875 - DZA65_RS02245 0.14 +0.1 488,117 - DZA65_RS02245 0.44 -0.9 488,117 - DZA65_RS02245 0.44 +0.5
Or see this region's nucleotide sequence