Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02195 and DZA65_RS02200 are separated by 149 nucleotides DZA65_RS02200 and DZA65_RS02205 are separated by 472 nucleotides
DZA65_RS02195: DZA65_RS02195 - hypothetical protein, at 476,944 to 478,332
_RS02195
DZA65_RS02200: DZA65_RS02200 - hypothetical protein, at 478,482 to 478,820
_RS02200
DZA65_RS02205: DZA65_RS02205 - hypothetical protein, at 479,293 to 480,096
_RS02205
Position (kb) 478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 477.504 kb on - strand, within DZA65_RS02195 at 477.504 kb on - strand, within DZA65_RS02195 at 477.539 kb on + strand, within DZA65_RS02195 at 477.540 kb on - strand, within DZA65_RS02195 at 477.838 kb on + strand, within DZA65_RS02195 at 477.838 kb on + strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.839 kb on - strand, within DZA65_RS02195 at 477.946 kb on + strand, within DZA65_RS02195 at 477.946 kb on + strand, within DZA65_RS02195 at 477.946 kb on + strand, within DZA65_RS02195 at 477.947 kb on - strand, within DZA65_RS02195 at 477.947 kb on - strand, within DZA65_RS02195 at 477.957 kb on + strand, within DZA65_RS02195 at 477.998 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.008 kb on + strand, within DZA65_RS02195 at 478.041 kb on + strand, within DZA65_RS02195 at 478.042 kb on - strand, within DZA65_RS02195 at 478.042 kb on - strand, within DZA65_RS02195 at 478.064 kb on - strand, within DZA65_RS02195 at 478.082 kb on + strand, within DZA65_RS02195 at 478.132 kb on + strand, within DZA65_RS02195 at 478.133 kb on - strand, within DZA65_RS02195 at 478.171 kb on + strand, within DZA65_RS02195 at 478.172 kb on - strand, within DZA65_RS02195 at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.255 kb on + strand at 478.256 kb on - strand at 478.256 kb on - strand at 478.256 kb on - strand at 478.256 kb on - strand at 478.331 kb on - strand at 478.331 kb on - strand at 478.331 kb on - strand at 478.331 kb on - strand at 478.333 kb on + strand at 478.333 kb on + strand at 478.333 kb on + strand at 478.334 kb on - strand at 478.334 kb on - strand at 478.334 kb on - strand at 478.334 kb on - strand at 478.397 kb on + strand at 478.398 kb on - strand at 478.433 kb on + strand at 478.433 kb on + strand at 478.434 kb on - strand at 478.434 kb on - strand at 478.434 kb on - strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.458 kb on + strand at 478.459 kb on - strand at 478.459 kb on - strand at 478.492 kb on + strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.535 kb on - strand, within DZA65_RS02200 at 478.563 kb on + strand, within DZA65_RS02200 at 478.564 kb on - strand, within DZA65_RS02200 at 478.744 kb on + strand, within DZA65_RS02200 at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.807 kb on + strand at 478.808 kb on - strand at 478.820 kb on + strand at 478.820 kb on + strand at 478.820 kb on + strand at 478.820 kb on + strand at 478.821 kb on - strand at 478.821 kb on - strand at 478.821 kb on - strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.824 kb on + strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.825 kb on - strand at 478.839 kb on + strand at 478.839 kb on + strand at 478.839 kb on + strand at 478.839 kb on + strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.840 kb on - strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.843 kb on + strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.844 kb on - strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.847 kb on + strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.848 kb on - strand at 478.875 kb on + strand at 478.875 kb on + strand at 478.875 kb on + strand at 478.875 kb on + strand at 478.876 kb on - strand at 478.876 kb on - strand at 479.003 kb on + strand at 479.003 kb on + strand at 479.004 kb on - strand at 479.004 kb on - strand at 479.004 kb on - strand at 479.007 kb on + strand at 479.008 kb on - strand at 479.008 kb on - strand at 479.009 kb on + strand at 479.009 kb on + strand at 479.010 kb on - strand at 479.010 kb on - strand at 479.010 kb on - strand at 479.097 kb on + strand at 479.102 kb on + strand at 479.150 kb on + strand at 479.150 kb on + strand at 479.150 kb on + strand at 479.151 kb on - strand at 479.151 kb on - strand at 479.256 kb on + strand at 479.256 kb on + strand at 479.256 kb on + strand at 479.257 kb on - strand at 479.257 kb on - strand at 479.302 kb on + strand at 479.302 kb on + strand at 479.347 kb on - strand at 479.347 kb on - strand at 479.372 kb on + strand at 479.372 kb on + strand at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.376 kb on + strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.377 kb on - strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.380 kb on + strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.381 kb on - strand, within DZA65_RS02205 at 479.440 kb on - strand, within DZA65_RS02205 at 479.612 kb on + strand, within DZA65_RS02205 at 479.612 kb on + strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.613 kb on - strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.629 kb on + strand, within DZA65_RS02205 at 479.630 kb on - strand, within DZA65_RS02205 at 479.630 kb on - strand, within DZA65_RS02205 at 479.776 kb on + strand, within DZA65_RS02205 at 479.777 kb on - strand, within DZA65_RS02205 at 479.777 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205 at 479.787 kb on - strand, within DZA65_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 477,504 - DZA65_RS02195 0.40 -0.8 477,504 - DZA65_RS02195 0.40 +0.1 477,539 + DZA65_RS02195 0.43 +0.4 477,540 - DZA65_RS02195 0.43 -1.8 477,838 + DZA65_RS02195 0.64 -0.0 477,838 + DZA65_RS02195 0.64 +0.3 477,839 - DZA65_RS02195 0.64 +0.3 477,839 - DZA65_RS02195 0.64 -0.6 477,839 - DZA65_RS02195 0.64 -0.5 477,839 - DZA65_RS02195 0.64 -1.8 477,839 - DZA65_RS02195 0.64 -0.1 477,946 + DZA65_RS02195 0.72 +0.2 477,946 + DZA65_RS02195 0.72 -2.3 477,946 + DZA65_RS02195 0.72 +0.0 477,947 - DZA65_RS02195 0.72 +0.7 477,947 - DZA65_RS02195 0.72 -0.9 477,957 + DZA65_RS02195 0.73 -0.3 477,998 + DZA65_RS02195 0.76 +0.1 478,008 + DZA65_RS02195 0.77 +0.3 478,008 + DZA65_RS02195 0.77 +0.4 478,008 + DZA65_RS02195 0.77 -1.9 478,008 + DZA65_RS02195 0.77 +0.2 478,041 + DZA65_RS02195 0.79 -0.4 478,042 - DZA65_RS02195 0.79 -2.1 478,042 - DZA65_RS02195 0.79 -0.1 478,064 - DZA65_RS02195 0.81 -0.8 478,082 + DZA65_RS02195 0.82 -2.1 478,132 + DZA65_RS02195 0.86 -0.0 478,133 - DZA65_RS02195 0.86 -1.1 478,171 + DZA65_RS02195 0.88 +0.0 478,172 - DZA65_RS02195 0.88 -2.3 478,255 + +0.2 478,255 + +1.1 478,255 + +0.1 478,255 + -0.0 478,255 + -0.1 478,255 + -0.2 478,255 + -0.8 478,255 + +1.2 478,255 + -2.1 478,255 + +0.3 478,255 + -0.2 478,256 - -0.3 478,256 - +2.1 478,256 - -0.2 478,256 - -0.2 478,331 - +0.1 478,331 - +0.7 478,331 - +0.3 478,331 - +1.4 478,333 + +0.8 478,333 + -1.1 478,333 + +0.8 478,334 - +0.5 478,334 - +0.7 478,334 - +0.4 478,334 - +1.1 478,397 + -0.9 478,398 - +0.1 478,433 + -0.1 478,433 + -0.1 478,434 - +1.0 478,434 - -1.5 478,434 - +0.2 478,458 + +1.3 478,458 + -0.4 478,458 + +0.1 478,458 + -0.6 478,458 + -0.1 478,458 + +1.3 478,458 + -0.9 478,459 - -0.3 478,459 - -2.6 478,492 + +0.1 478,493 - +0.5 478,493 - +0.7 478,535 - DZA65_RS02200 0.16 -0.5 478,563 + DZA65_RS02200 0.24 +0.1 478,564 - DZA65_RS02200 0.24 -0.4 478,744 + DZA65_RS02200 0.77 +0.4 478,807 + -0.1 478,807 + -0.6 478,807 + -0.2 478,807 + +0.2 478,807 + -0.5 478,807 + +0.8 478,808 - +0.4 478,820 + +0.5 478,820 + +0.0 478,820 + +0.2 478,820 + +0.4 478,821 - -0.7 478,821 - -0.2 478,821 - -2.1 478,824 + +1.4 478,824 + +1.1 478,824 + -0.5 478,824 + -0.7 478,824 + -1.5 478,824 + -0.4 478,824 + -0.1 478,824 + -0.6 478,824 + +0.8 478,824 + +1.3 478,825 - -0.7 478,825 - -0.1 478,825 - +0.5 478,825 - +0.3 478,825 - -0.3 478,839 + +0.1 478,839 + -0.6 478,839 + +0.3 478,839 + -0.1 478,840 - -0.8 478,840 - +0.8 478,840 - -0.4 478,840 - +2.3 478,840 - -0.1 478,840 - -0.6 478,843 + +0.1 478,843 + +1.2 478,843 + +1.1 478,843 + -1.5 478,843 + +1.5 478,843 + -0.1 478,843 + -0.3 478,844 - -3.1 478,844 - -2.5 478,844 - +0.0 478,844 - -0.7 478,844 - -0.2 478,844 - -0.6 478,844 - +0.0 478,844 - +0.3 478,844 - +0.5 478,844 - -0.1 478,844 - -0.8 478,844 - +0.6 478,844 - -1.6 478,844 - +0.3 478,844 - -2.3 478,844 - +0.1 478,847 + +0.6 478,847 + +0.8 478,847 + +1.1 478,847 + +1.1 478,847 + -0.9 478,847 + +1.1 478,847 + +0.3 478,847 + -0.5 478,847 + -0.5 478,847 + +0.5 478,847 + -0.1 478,847 + +0.2 478,847 + -0.1 478,847 + -1.8 478,847 + -0.5 478,848 - -1.1 478,848 - -0.5 478,848 - +1.0 478,848 - -0.5 478,848 - -0.2 478,848 - +0.5 478,848 - +0.9 478,848 - -0.6 478,848 - +0.7 478,848 - +0.7 478,848 - +0.3 478,848 - +0.0 478,848 - +0.0 478,848 - -1.0 478,875 + +1.8 478,875 + +0.3 478,875 + +0.6 478,875 + -1.0 478,876 - +0.1 478,876 - +0.0 479,003 + +0.5 479,003 + +0.5 479,004 - +0.3 479,004 - +0.5 479,004 - -2.1 479,007 + +1.5 479,008 - -1.6 479,008 - -0.6 479,009 + -0.5 479,009 + +0.2 479,010 - -2.1 479,010 - -1.4 479,010 - -0.1 479,097 + -0.9 479,102 + +0.6 479,150 + +1.4 479,150 + -0.7 479,150 + -0.9 479,151 - -0.3 479,151 - -1.1 479,256 + +0.1 479,256 + +0.8 479,256 + +0.9 479,257 - -0.5 479,257 - -0.3 479,302 + +0.6 479,302 + +1.8 479,347 - +0.6 479,347 - -1.2 479,372 + +1.0 479,372 + -0.5 479,376 + DZA65_RS02205 0.10 +0.2 479,376 + DZA65_RS02205 0.10 -0.5 479,376 + DZA65_RS02205 0.10 -0.9 479,376 + DZA65_RS02205 0.10 +0.3 479,376 + DZA65_RS02205 0.10 +0.2 479,376 + DZA65_RS02205 0.10 -1.2 479,376 + DZA65_RS02205 0.10 -0.8 479,376 + DZA65_RS02205 0.10 -0.8 479,376 + DZA65_RS02205 0.10 -1.8 479,376 + DZA65_RS02205 0.10 +0.2 479,376 + DZA65_RS02205 0.10 -0.3 479,376 + DZA65_RS02205 0.10 -1.2 479,376 + DZA65_RS02205 0.10 +0.3 479,377 - DZA65_RS02205 0.10 +0.8 479,377 - DZA65_RS02205 0.10 +1.8 479,377 - DZA65_RS02205 0.10 -1.7 479,377 - DZA65_RS02205 0.10 +1.1 479,377 - DZA65_RS02205 0.10 -1.1 479,377 - DZA65_RS02205 0.10 -2.1 479,377 - DZA65_RS02205 0.10 -0.5 479,377 - DZA65_RS02205 0.10 +0.5 479,377 - DZA65_RS02205 0.10 -0.0 479,377 - DZA65_RS02205 0.10 +0.8 479,377 - DZA65_RS02205 0.10 -0.2 479,377 - DZA65_RS02205 0.10 +0.5 479,380 + DZA65_RS02205 0.11 +0.5 479,380 + DZA65_RS02205 0.11 +0.2 479,380 + DZA65_RS02205 0.11 -0.8 479,381 - DZA65_RS02205 0.11 +2.8 479,381 - DZA65_RS02205 0.11 -0.6 479,381 - DZA65_RS02205 0.11 +0.3 479,440 - DZA65_RS02205 0.18 +1.1 479,612 + DZA65_RS02205 0.40 -0.7 479,612 + DZA65_RS02205 0.40 -0.0 479,613 - DZA65_RS02205 0.40 +1.3 479,613 - -0.8 479,613 - DZA65_RS02205 0.40 +0.1 479,613 - DZA65_RS02205 0.40 -1.0 479,613 - DZA65_RS02205 0.40 -0.3 479,613 - DZA65_RS02205 0.40 +0.5 479,629 + DZA65_RS02205 0.42 +0.6 479,629 + DZA65_RS02205 0.42 +0.3 479,629 + DZA65_RS02205 0.42 -0.4 479,629 + DZA65_RS02205 0.42 +1.3 479,629 + DZA65_RS02205 0.42 -2.1 479,629 + DZA65_RS02205 0.42 -0.6 479,630 - DZA65_RS02205 0.42 -0.0 479,630 - DZA65_RS02205 0.42 -1.1 479,776 + DZA65_RS02205 0.60 -0.5 479,777 - DZA65_RS02205 0.60 +1.0 479,777 - DZA65_RS02205 0.60 +0.8 479,787 - DZA65_RS02205 0.61 -0.3 479,787 - DZA65_RS02205 0.61 +0.2 479,787 - DZA65_RS02205 0.61 +0.5
Or see this region's nucleotide sequence