Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02175 and DZA65_RS02180 are separated by 11 nucleotides DZA65_RS02180 and DZA65_RS02185 are separated by 51 nucleotides DZA65_RS02185 and DZA65_RS02195 are separated by 297 nucleotides
DZA65_RS02175: DZA65_RS02175 - DUF4102 domain-containing protein, at 475,094 to 475,517
_RS02175
DZA65_RS02180: DZA65_RS02180 - IS5 family transposase, at 475,529 to 476,373
_RS02180
DZA65_RS02185: DZA65_RS02185 - DUF1778 domain-containing protein, at 476,425 to 476,646
_RS02185
DZA65_RS02195: DZA65_RS02195 - hypothetical protein, at 476,944 to 478,332
_RS02195
Position (kb) 476
477 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 475.457 kb on + strand, within DZA65_RS02175 at 475.457 kb on + strand, within DZA65_RS02175 at 475.474 kb on + strand, within DZA65_RS02175 at 475.474 kb on + strand, within DZA65_RS02175 at 475.499 kb on + strand at 475.500 kb on - strand at 475.500 kb on - strand at 475.531 kb on - strand at 475.535 kb on + strand at 475.536 kb on - strand at 475.536 kb on - strand at 475.574 kb on + strand at 475.574 kb on + strand at 475.574 kb on + strand at 475.575 kb on - strand at 475.575 kb on - strand at 475.575 kb on - strand at 475.579 kb on + strand at 475.580 kb on - strand at 475.580 kb on - strand at 475.587 kb on + strand at 475.732 kb on + strand, within DZA65_RS02180 at 475.751 kb on + strand, within DZA65_RS02180 at 475.751 kb on + strand, within DZA65_RS02180 at 475.761 kb on - strand, within DZA65_RS02180 at 475.770 kb on + strand, within DZA65_RS02180 at 475.771 kb on - strand, within DZA65_RS02180 at 476.251 kb on + strand, within DZA65_RS02180 at 476.282 kb on + strand, within DZA65_RS02180 at 476.282 kb on + strand, within DZA65_RS02180 at 476.376 kb on + strand at 476.423 kb on - strand at 476.426 kb on + strand at 476.427 kb on - strand at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.568 kb on + strand, within DZA65_RS02185 at 476.569 kb on - strand, within DZA65_RS02185 at 476.569 kb on - strand, within DZA65_RS02185 at 476.646 kb on + strand at 476.646 kb on + strand at 476.646 kb on + strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.647 kb on - strand at 476.650 kb on - strand at 476.662 kb on + strand at 476.670 kb on - strand at 476.674 kb on - strand at 476.675 kb on + strand at 476.689 kb on + strand at 476.713 kb on + strand at 476.714 kb on - strand at 476.766 kb on + strand at 476.766 kb on + strand at 476.767 kb on - strand at 476.781 kb on + strand at 476.781 kb on + strand at 476.781 kb on + strand at 476.782 kb on - strand at 476.782 kb on - strand at 476.804 kb on + strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.805 kb on - strand at 476.833 kb on + strand at 476.833 kb on + strand at 476.834 kb on - strand at 476.834 kb on - strand at 476.834 kb on - strand at 476.836 kb on + strand at 476.836 kb on + strand at 476.837 kb on - strand at 476.887 kb on + strand at 476.887 kb on + strand at 476.887 kb on + strand at 476.888 kb on - strand at 476.888 kb on - strand at 476.888 kb on - strand at 476.901 kb on + strand at 476.909 kb on + strand at 476.910 kb on - strand at 476.936 kb on + strand at 476.937 kb on - strand at 477.008 kb on + strand at 477.008 kb on + strand at 477.008 kb on + strand at 477.009 kb on - strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.017 kb on + strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.020 kb on + strand at 477.021 kb on - strand at 477.021 kb on - strand at 477.039 kb on + strand at 477.040 kb on - strand at 477.040 kb on - strand at 477.095 kb on + strand, within DZA65_RS02195 at 477.095 kb on + strand, within DZA65_RS02195 at 477.095 kb on + strand, within DZA65_RS02195 at 477.115 kb on + strand, within DZA65_RS02195 at 477.115 kb on + strand, within DZA65_RS02195 at 477.116 kb on - strand, within DZA65_RS02195 at 477.116 kb on - strand, within DZA65_RS02195 at 477.116 kb on - strand, within DZA65_RS02195 at 477.117 kb on + strand, within DZA65_RS02195 at 477.117 kb on + strand, within DZA65_RS02195 at 477.118 kb on - strand, within DZA65_RS02195 at 477.145 kb on + strand, within DZA65_RS02195 at 477.146 kb on - strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand, within DZA65_RS02195 at 477.151 kb on + strand at 477.151 kb on + strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.152 kb on - strand, within DZA65_RS02195 at 477.154 kb on + strand, within DZA65_RS02195 at 477.193 kb on - strand, within DZA65_RS02195 at 477.297 kb on + strand, within DZA65_RS02195 at 477.297 kb on + strand, within DZA65_RS02195 at 477.323 kb on - strand, within DZA65_RS02195 at 477.406 kb on + strand, within DZA65_RS02195 at 477.406 kb on + strand, within DZA65_RS02195 at 477.407 kb on - strand, within DZA65_RS02195 at 477.407 kb on - strand, within DZA65_RS02195 at 477.407 kb on - strand, within DZA65_RS02195 at 477.504 kb on - strand, within DZA65_RS02195 at 477.504 kb on - strand, within DZA65_RS02195 at 477.539 kb on + strand, within DZA65_RS02195 at 477.540 kb on - strand, within DZA65_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 475,457 + DZA65_RS02175 0.86 -0.6 475,457 + DZA65_RS02175 0.86 -0.9 475,474 + DZA65_RS02175 0.90 -0.6 475,474 + DZA65_RS02175 0.90 -0.9 475,499 + -1.3 475,500 - +0.5 475,500 - +0.5 475,531 - +0.1 475,535 + +0.0 475,536 - -0.8 475,536 - +3.3 475,574 + -0.6 475,574 + +1.0 475,574 + -0.1 475,575 - -1.1 475,575 - -0.1 475,575 - +0.7 475,579 + -0.2 475,580 - +0.7 475,580 - -1.1 475,587 + -0.5 475,732 + DZA65_RS02180 0.24 +0.1 475,751 + DZA65_RS02180 0.26 -0.5 475,751 + DZA65_RS02180 0.26 -2.1 475,761 - DZA65_RS02180 0.27 -0.4 475,770 + DZA65_RS02180 0.29 -0.5 475,771 - DZA65_RS02180 0.29 -1.3 476,251 + DZA65_RS02180 0.85 +2.1 476,282 + DZA65_RS02180 0.89 -1.9 476,282 + DZA65_RS02180 0.89 -0.4 476,376 + +0.7 476,423 - +0.3 476,426 + -0.1 476,427 - +0.8 476,463 - DZA65_RS02185 0.17 -0.3 476,463 - DZA65_RS02185 0.17 -0.5 476,463 - DZA65_RS02185 0.17 -0.3 476,463 - DZA65_RS02185 0.17 -0.0 476,463 - DZA65_RS02185 0.17 -1.3 476,463 - DZA65_RS02185 0.17 -0.5 476,463 - DZA65_RS02185 0.17 +0.5 476,463 - DZA65_RS02185 0.17 +0.8 476,463 - DZA65_RS02185 0.17 +0.1 476,463 - DZA65_RS02185 0.17 -0.2 476,463 - DZA65_RS02185 0.17 -0.6 476,463 - DZA65_RS02185 0.17 +0.1 476,463 - DZA65_RS02185 0.17 +2.0 476,463 - DZA65_RS02185 0.17 +0.5 476,463 - DZA65_RS02185 0.17 -0.2 476,568 + DZA65_RS02185 0.64 -1.3 476,569 - DZA65_RS02185 0.65 +1.5 476,569 - DZA65_RS02185 0.65 -1.2 476,646 + -0.4 476,646 + +0.2 476,646 + -0.4 476,647 - -0.9 476,647 - -1.6 476,647 - +1.3 476,647 - +0.3 476,647 - +0.5 476,647 - +0.1 476,650 - -0.2 476,662 + -0.8 476,670 - +2.2 476,674 - +1.5 476,675 + -0.5 476,689 + +0.5 476,713 + -0.3 476,714 - -1.3 476,766 + +0.5 476,766 + +1.1 476,767 - +0.2 476,781 + -0.2 476,781 + +1.3 476,781 + -0.8 476,782 - -1.4 476,782 - +0.7 476,804 + +1.0 476,805 - +0.5 476,805 - +0.7 476,805 - +0.5 476,805 - +0.0 476,805 - -0.9 476,805 - -1.1 476,805 - +0.5 476,833 + +1.2 476,833 + -0.2 476,834 - -1.2 476,834 - -0.5 476,834 - +1.8 476,836 + +1.6 476,836 + +0.2 476,837 - -0.9 476,887 + -0.8 476,887 + -0.5 476,887 + +0.9 476,888 - +1.8 476,888 - -0.5 476,888 - -1.1 476,901 + -0.2 476,909 + -1.2 476,910 - +0.3 476,936 + +0.1 476,937 - +0.7 477,008 + -0.3 477,008 + +0.9 477,008 + +0.0 477,009 - +1.5 477,017 + +0.0 477,017 + +0.1 477,017 + +0.2 477,017 + +0.5 477,017 + +1.5 477,017 + +1.7 477,017 + +0.4 477,018 - +0.6 477,018 - +0.5 477,018 - +0.0 477,018 - +0.5 477,018 - +0.5 477,018 - -1.1 477,018 - +2.3 477,020 + +0.3 477,021 - +1.5 477,021 - -0.8 477,039 + -1.3 477,040 - +0.2 477,040 - +0.5 477,095 + DZA65_RS02195 0.11 +0.0 477,095 + DZA65_RS02195 0.11 -0.4 477,095 + DZA65_RS02195 0.11 +0.8 477,115 + DZA65_RS02195 0.12 +0.3 477,115 + DZA65_RS02195 0.12 -0.7 477,116 - DZA65_RS02195 0.12 +0.0 477,116 - DZA65_RS02195 0.12 -0.6 477,116 - DZA65_RS02195 0.12 -2.1 477,117 + DZA65_RS02195 0.12 -0.9 477,117 + DZA65_RS02195 0.12 +1.3 477,118 - DZA65_RS02195 0.13 -0.6 477,145 + DZA65_RS02195 0.14 +0.3 477,146 - DZA65_RS02195 0.15 -1.1 477,151 + DZA65_RS02195 0.15 +0.1 477,151 + DZA65_RS02195 0.15 +0.5 477,151 + DZA65_RS02195 0.15 -1.3 477,151 + DZA65_RS02195 0.15 +0.9 477,151 + DZA65_RS02195 0.15 -1.6 477,151 + DZA65_RS02195 0.15 -0.2 477,151 + -0.5 477,151 + DZA65_RS02195 0.15 +0.5 477,152 - DZA65_RS02195 0.15 +1.0 477,152 - DZA65_RS02195 0.15 -0.1 477,152 - DZA65_RS02195 0.15 -0.3 477,152 - DZA65_RS02195 0.15 -0.1 477,152 - DZA65_RS02195 0.15 +0.5 477,152 - DZA65_RS02195 0.15 -0.9 477,152 - DZA65_RS02195 0.15 -2.6 477,154 + DZA65_RS02195 0.15 -0.2 477,193 - DZA65_RS02195 0.18 -2.4 477,297 + DZA65_RS02195 0.25 +0.5 477,297 + DZA65_RS02195 0.25 -2.3 477,323 - DZA65_RS02195 0.27 -0.1 477,406 + DZA65_RS02195 0.33 +0.9 477,406 + DZA65_RS02195 0.33 -0.2 477,407 - DZA65_RS02195 0.33 -0.9 477,407 - DZA65_RS02195 0.33 +0.5 477,407 - DZA65_RS02195 0.33 -2.1 477,504 - DZA65_RS02195 0.40 -0.8 477,504 - DZA65_RS02195 0.40 +0.1 477,539 + DZA65_RS02195 0.43 +0.4 477,540 - DZA65_RS02195 0.43 -1.8
Or see this region's nucleotide sequence