Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02145 and DZA65_RS02150 overlap by 11 nucleotides DZA65_RS02150 and DZA65_RS02160 are separated by 297 nucleotides
DZA65_RS02145: DZA65_RS02145 - type II toxin-antitoxin system RelE/ParE family toxin, at 472,540 to 472,860
_RS02145
DZA65_RS02150: DZA65_RS02150 - helix-turn-helix transcriptional regulator, at 472,850 to 473,134
_RS02150
DZA65_RS02160: DZA65_RS02160 - hypothetical protein, at 473,432 to 473,833
_RS02160
Position (kb) 472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 471.578 kb on - strand at 471.666 kb on + strand at 471.666 kb on + strand at 471.666 kb on + strand at 471.667 kb on - strand at 471.726 kb on + strand at 471.726 kb on + strand at 471.726 kb on + strand at 471.727 kb on - strand at 471.727 kb on - strand at 471.727 kb on - strand at 471.735 kb on + strand at 471.736 kb on - strand at 471.736 kb on - strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.815 kb on + strand at 471.816 kb on - strand at 471.816 kb on - strand at 471.822 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.892 kb on + strand at 471.893 kb on - strand at 471.893 kb on - strand at 471.896 kb on + strand at 471.896 kb on + strand at 471.897 kb on - strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.917 kb on + strand at 471.918 kb on - strand at 471.920 kb on + strand at 471.936 kb on + strand at 471.937 kb on - strand at 471.937 kb on - strand at 471.937 kb on - strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.941 kb on + strand at 471.942 kb on - strand at 471.942 kb on - strand at 471.942 kb on - strand at 471.971 kb on + strand at 471.971 kb on + strand at 471.972 kb on - strand at 471.989 kb on - strand at 471.989 kb on - strand at 472.035 kb on + strand at 472.036 kb on - strand at 472.036 kb on - strand at 472.037 kb on + strand at 472.037 kb on + strand at 472.037 kb on + strand at 472.038 kb on - strand at 472.038 kb on - strand at 472.318 kb on + strand at 472.318 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.347 kb on + strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.348 kb on - strand at 472.412 kb on + strand at 472.412 kb on + strand at 472.412 kb on + strand at 472.424 kb on + strand at 472.424 kb on + strand at 472.455 kb on + strand at 472.455 kb on + strand at 472.456 kb on - strand at 472.512 kb on + strand at 472.524 kb on + strand at 472.524 kb on + strand at 472.524 kb on + strand at 472.525 kb on - strand at 472.527 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.583 kb on - strand, within DZA65_RS02145 at 472.583 kb on - strand, within DZA65_RS02145 at 472.583 kb on - strand, within DZA65_RS02145 at 472.599 kb on + strand, within DZA65_RS02145 at 472.599 kb on + strand, within DZA65_RS02145 at 472.641 kb on + strand, within DZA65_RS02145 at 472.655 kb on + strand, within DZA65_RS02145 at 472.656 kb on - strand, within DZA65_RS02145 at 472.656 kb on - strand, within DZA65_RS02145 at 472.701 kb on - strand, within DZA65_RS02145 at 472.710 kb on + strand, within DZA65_RS02145 at 472.711 kb on - strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.756 kb on - strand, within DZA65_RS02145 at 472.756 kb on - strand, within DZA65_RS02145 at 472.756 kb on - strand at 472.756 kb on - strand, within DZA65_RS02145 at 472.762 kb on + strand, within DZA65_RS02145 at 472.762 kb on + strand, within DZA65_RS02145 at 472.764 kb on + strand, within DZA65_RS02145 at 472.765 kb on - strand, within DZA65_RS02145 at 472.770 kb on - strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 473.058 kb on + strand, within DZA65_RS02150 at 473.082 kb on + strand, within DZA65_RS02150 at 473.082 kb on + strand, within DZA65_RS02150 at 473.133 kb on - strand at 473.344 kb on - strand at 473.362 kb on + strand at 473.362 kb on + strand at 473.363 kb on - strand at 473.363 kb on - strand at 473.379 kb on + strand at 473.380 kb on - strand at 473.382 kb on + strand at 473.382 kb on + strand at 473.382 kb on + strand at 473.383 kb on - strand at 473.388 kb on + strand at 473.389 kb on - strand at 473.389 kb on - strand at 473.389 kb on - strand at 473.392 kb on + strand at 473.393 kb on - strand at 473.393 kb on - strand at 473.407 kb on + strand at 473.408 kb on - strand at 473.408 kb on - strand at 473.410 kb on + strand at 473.411 kb on - strand at 473.411 kb on - strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.453 kb on - strand at 473.453 kb on - strand at 473.453 kb on - strand at 473.476 kb on + strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.509 kb on + strand, within DZA65_RS02160 at 473.509 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.512 kb on - strand, within DZA65_RS02160 at 473.512 kb on - strand, within DZA65_RS02160 at 473.519 kb on + strand, within DZA65_RS02160 at 473.519 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.553 kb on - strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.560 kb on + strand, within DZA65_RS02160 at 473.561 kb on - strand, within DZA65_RS02160 at 473.591 kb on + strand, within DZA65_RS02160 at 473.609 kb on + strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.626 kb on - strand at 473.626 kb on - strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.639 kb on - strand, within DZA65_RS02160 at 473.639 kb on - strand, within DZA65_RS02160 at 473.642 kb on - strand, within DZA65_RS02160 at 473.668 kb on + strand, within DZA65_RS02160 at 473.700 kb on - strand, within DZA65_RS02160 at 473.700 kb on - strand at 473.730 kb on - strand, within DZA65_RS02160 at 473.797 kb on + strand at 473.797 kb on + strand at 473.798 kb on - strand at 473.801 kb on + strand at 473.801 kb on + strand at 473.802 kb on - strand at 473.818 kb on + strand at 473.819 kb on - strand at 473.822 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 471,578 - -0.3 471,666 + +3.3 471,666 + -0.5 471,666 + +2.3 471,667 - +1.0 471,726 + +0.5 471,726 + -0.2 471,726 + -1.1 471,727 - -0.7 471,727 - +0.4 471,727 - +0.3 471,735 + -0.1 471,736 - +0.3 471,736 - +0.0 471,815 + -2.5 471,815 + +0.3 471,815 + -0.0 471,815 + +0.7 471,815 + +1.7 471,815 + -0.1 471,815 + +1.3 471,815 + -0.8 471,816 - +1.0 471,816 - -1.1 471,822 + +1.0 471,892 + +0.1 471,892 + -0.6 471,892 + +1.2 471,892 + -0.4 471,892 + +0.3 471,892 + -3.1 471,893 - -0.8 471,893 - -1.9 471,896 + -0.1 471,896 + +0.6 471,897 - +0.7 471,917 + -0.3 471,917 + -0.1 471,917 + +0.1 471,917 + -0.7 471,917 + +0.1 471,918 - +0.5 471,920 + -0.3 471,936 + +0.9 471,937 - +0.4 471,937 - -0.4 471,937 - +0.0 471,941 + -0.5 471,941 + +0.9 471,941 + -1.8 471,941 + +0.2 471,941 + -0.2 471,941 + +0.5 471,942 - +0.0 471,942 - -1.5 471,942 - +1.0 471,971 + +0.5 471,971 + +0.4 471,972 - +0.2 471,989 - +0.3 471,989 - -0.9 472,035 + -1.3 472,036 - +1.5 472,036 - -0.1 472,037 + -2.8 472,037 + -0.9 472,037 + -0.1 472,038 - -0.6 472,038 - +0.1 472,318 + +0.5 472,318 + -0.5 472,347 + -0.1 472,347 + -0.1 472,347 + +0.0 472,347 + +1.1 472,347 + +0.4 472,347 + +0.0 472,347 + -0.2 472,347 + -0.4 472,347 + +0.3 472,347 + -0.2 472,347 + -0.3 472,348 - -0.1 472,348 - -0.3 472,348 - -1.6 472,348 - -0.3 472,348 - -0.6 472,348 - -0.7 472,348 - +1.1 472,348 - -0.9 472,348 - -0.7 472,348 - -1.1 472,348 - -0.9 472,412 + -1.1 472,412 + +0.3 472,412 + +0.3 472,424 + +0.9 472,424 + -0.1 472,455 + -0.1 472,455 + +1.4 472,456 - -0.4 472,512 + +0.1 472,524 + -0.5 472,524 + +1.1 472,524 + -0.5 472,525 - -0.3 472,527 + +0.1 472,543 + -2.3 472,543 + -0.1 472,543 + -0.7 472,543 + +0.1 472,543 + +0.3 472,543 + +1.1 472,543 + -0.7 472,543 + -1.3 472,543 + -0.1 472,544 - -0.1 472,544 - -0.3 472,544 - -0.0 472,544 - +0.3 472,544 - -0.2 472,544 - -0.1 472,583 - DZA65_RS02145 0.13 +0.3 472,583 - DZA65_RS02145 0.13 -0.1 472,583 - DZA65_RS02145 0.13 +0.4 472,599 + DZA65_RS02145 0.18 -0.1 472,599 + DZA65_RS02145 0.18 -0.7 472,641 + DZA65_RS02145 0.31 -0.1 472,655 + DZA65_RS02145 0.36 +1.5 472,656 - DZA65_RS02145 0.36 +0.5 472,656 - DZA65_RS02145 0.36 -0.5 472,701 - DZA65_RS02145 0.50 -0.8 472,710 + DZA65_RS02145 0.53 +2.0 472,711 - DZA65_RS02145 0.53 -0.3 472,755 + DZA65_RS02145 0.67 -1.5 472,755 + DZA65_RS02145 0.67 +0.9 472,755 + DZA65_RS02145 0.67 -0.2 472,755 + DZA65_RS02145 0.67 +0.7 472,755 + DZA65_RS02145 0.67 -2.1 472,755 + DZA65_RS02145 0.67 +0.3 472,755 + DZA65_RS02145 0.67 +0.2 472,756 - DZA65_RS02145 0.67 -0.1 472,756 - DZA65_RS02145 0.67 +1.1 472,756 - -0.8 472,756 - DZA65_RS02145 0.67 +0.3 472,762 + DZA65_RS02145 0.69 +0.9 472,762 + DZA65_RS02145 0.69 -0.9 472,764 + DZA65_RS02145 0.70 +0.1 472,765 - DZA65_RS02145 0.70 -0.8 472,770 - DZA65_RS02145 0.72 +0.9 472,814 + DZA65_RS02145 0.85 +0.5 472,814 + DZA65_RS02145 0.85 -0.3 472,814 + DZA65_RS02145 0.85 -0.9 472,814 + DZA65_RS02145 0.85 -0.2 472,996 + DZA65_RS02150 0.51 -0.5 472,996 + DZA65_RS02150 0.51 +1.1 472,996 + DZA65_RS02150 0.51 -0.2 472,996 + DZA65_RS02150 0.51 -0.3 472,996 + DZA65_RS02150 0.51 -0.8 472,996 + DZA65_RS02150 0.51 -1.5 473,058 + DZA65_RS02150 0.73 -1.1 473,082 + DZA65_RS02150 0.81 -0.9 473,082 + DZA65_RS02150 0.81 +0.3 473,133 - +0.1 473,344 - +0.1 473,362 + -0.6 473,362 + -0.5 473,363 - -1.9 473,363 - +1.8 473,379 + -1.5 473,380 - -0.2 473,382 + -0.3 473,382 + -0.0 473,382 + +0.1 473,383 - +2.5 473,388 + +0.2 473,389 - +0.2 473,389 - +0.5 473,389 - +0.4 473,392 + -0.7 473,393 - -0.8 473,393 - -1.3 473,407 + +0.5 473,408 - +0.8 473,408 - -0.8 473,410 + +0.4 473,411 - -2.5 473,411 - +0.2 473,452 + +0.8 473,452 + -1.8 473,452 + -0.2 473,452 + +0.5 473,452 + -1.3 473,453 - +0.5 473,453 - -0.4 473,453 - -0.3 473,476 + DZA65_RS02160 0.11 -0.0 473,477 - DZA65_RS02160 0.11 +0.3 473,477 - DZA65_RS02160 0.11 +0.2 473,477 - DZA65_RS02160 0.11 +0.8 473,509 + DZA65_RS02160 0.19 -1.6 473,509 + DZA65_RS02160 0.19 -0.0 473,511 + DZA65_RS02160 0.20 -0.9 473,511 + DZA65_RS02160 0.20 -0.2 473,511 + DZA65_RS02160 0.20 +0.0 473,511 + DZA65_RS02160 0.20 -0.2 473,511 + DZA65_RS02160 0.20 -0.4 473,512 - DZA65_RS02160 0.20 +0.5 473,512 - DZA65_RS02160 0.20 +0.7 473,519 + DZA65_RS02160 0.22 -0.1 473,519 + DZA65_RS02160 0.22 -1.6 473,552 + DZA65_RS02160 0.30 +2.3 473,552 + DZA65_RS02160 0.30 +0.1 473,552 + DZA65_RS02160 0.30 -0.3 473,553 - DZA65_RS02160 0.30 +1.0 473,556 + DZA65_RS02160 0.31 -0.6 473,556 + DZA65_RS02160 0.31 -0.3 473,556 + DZA65_RS02160 0.31 +0.2 473,556 + DZA65_RS02160 0.31 -0.7 473,556 + DZA65_RS02160 0.31 -0.6 473,556 + DZA65_RS02160 0.31 -0.7 473,556 + DZA65_RS02160 0.31 +0.0 473,557 - DZA65_RS02160 0.31 -0.6 473,557 - -0.2 473,557 - DZA65_RS02160 0.31 -0.4 473,557 - DZA65_RS02160 0.31 -0.1 473,557 - DZA65_RS02160 0.31 -0.3 473,557 - DZA65_RS02160 0.31 +0.9 473,560 + DZA65_RS02160 0.32 -0.8 473,561 - DZA65_RS02160 0.32 -1.1 473,591 + DZA65_RS02160 0.40 -1.9 473,609 + DZA65_RS02160 0.44 +0.6 473,610 - DZA65_RS02160 0.44 -0.5 473,610 - DZA65_RS02160 0.44 +0.1 473,610 - DZA65_RS02160 0.44 +1.3 473,626 - -2.1 473,626 - DZA65_RS02160 0.48 -0.8 473,638 + DZA65_RS02160 0.51 +0.2 473,638 + DZA65_RS02160 0.51 -0.2 473,638 + DZA65_RS02160 0.51 +0.4 473,639 - DZA65_RS02160 0.51 -1.5 473,639 - DZA65_RS02160 0.51 -1.2 473,642 - DZA65_RS02160 0.52 -1.8 473,668 + DZA65_RS02160 0.59 -2.4 473,700 - DZA65_RS02160 0.67 -0.0 473,700 - +0.5 473,730 - DZA65_RS02160 0.74 -1.3 473,797 + +0.6 473,797 + +1.4 473,798 - -0.0 473,801 + +0.1 473,801 + -0.7 473,802 - +1.4 473,818 + -0.3 473,819 - +0.8 473,822 + -0.6
Or see this region's nucleotide sequence