Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02130 and DZA65_RS02135 overlap by 17 nucleotides DZA65_RS02135 and DZA65_RS02140 are separated by 286 nucleotides
DZA65_RS02130: DZA65_RS02130 - type II toxin-antitoxin system RelE/ParE family toxin, at 468,747 to 469,098
_RS02130
DZA65_RS02135: DZA65_RS02135 - DNA-binding transcriptional regulator, at 469,082 to 469,405
_RS02135
DZA65_RS02140: DZA65_RS02140 - RNA-directed DNA polymerase, at 469,692 to 471,419
_RS02140
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 468.087 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.108 kb on + strand at 468.109 kb on - strand at 468.109 kb on - strand at 468.163 kb on + strand at 468.163 kb on + strand at 468.163 kb on + strand at 468.164 kb on - strand at 468.164 kb on - strand at 468.164 kb on - strand at 468.171 kb on + strand at 468.171 kb on + strand at 468.182 kb on + strand at 468.183 kb on - strand at 468.183 kb on - strand at 468.183 kb on - strand at 468.191 kb on + strand at 468.192 kb on - strand at 468.192 kb on - strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.194 kb on + strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.195 kb on - strand at 468.207 kb on + strand at 468.207 kb on + strand at 468.207 kb on + strand at 468.229 kb on - strand at 468.229 kb on - strand at 468.229 kb on - strand at 468.274 kb on + strand at 468.274 kb on + strand at 468.275 kb on - strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.276 kb on + strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.277 kb on - strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.279 kb on + strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.280 kb on - strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.281 kb on + strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.282 kb on - strand at 468.295 kb on + strand at 468.324 kb on - strand at 468.353 kb on + strand at 468.353 kb on + strand at 468.358 kb on + strand at 468.359 kb on - strand at 468.359 kb on - strand at 468.384 kb on - strand at 468.398 kb on + strand at 468.399 kb on - strand at 468.435 kb on - strand at 468.481 kb on + strand at 468.481 kb on + strand at 468.481 kb on + strand at 468.482 kb on - strand at 468.482 kb on - strand at 468.482 kb on - strand at 468.487 kb on + strand at 468.537 kb on + strand at 468.538 kb on - strand at 468.564 kb on - strand at 468.588 kb on - strand at 468.588 kb on - strand at 468.649 kb on + strand at 468.650 kb on - strand at 468.675 kb on + strand at 468.675 kb on + strand at 468.676 kb on - strand at 468.676 kb on - strand at 468.685 kb on - strand at 468.701 kb on + strand at 468.706 kb on + strand at 468.707 kb on - strand at 468.722 kb on - strand at 468.725 kb on + strand at 468.774 kb on - strand at 468.776 kb on + strand at 468.776 kb on + strand at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.814 kb on + strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.815 kb on - strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.913 kb on + strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.914 kb on - strand, within DZA65_RS02130 at 468.942 kb on + strand, within DZA65_RS02130 at 468.954 kb on + strand, within DZA65_RS02130 at 468.954 kb on + strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 468.955 kb on - strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.020 kb on + strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.021 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.042 kb on - strand, within DZA65_RS02130 at 469.053 kb on + strand, within DZA65_RS02130 at 469.053 kb on + strand, within DZA65_RS02130 at 469.059 kb on + strand at 469.060 kb on - strand, within DZA65_RS02130 at 469.204 kb on + strand, within DZA65_RS02135 at 469.205 kb on - strand, within DZA65_RS02135 at 469.237 kb on + strand, within DZA65_RS02135 at 469.237 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.257 kb on + strand, within DZA65_RS02135 at 469.258 kb on - strand, within DZA65_RS02135 at 469.414 kb on + strand at 469.414 kb on + strand at 469.414 kb on + strand at 469.414 kb on + strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.415 kb on - strand at 469.422 kb on + strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.423 kb on - strand at 469.462 kb on + strand at 469.463 kb on - strand at 469.463 kb on - strand at 469.479 kb on + strand at 469.509 kb on + strand at 469.509 kb on + strand at 469.509 kb on + strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.510 kb on - strand at 469.516 kb on + strand at 469.517 kb on - strand at 469.517 kb on - strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.557 kb on - strand at 469.557 kb on - strand at 469.616 kb on + strand at 469.617 kb on - strand at 469.617 kb on - strand at 469.621 kb on + strand at 469.682 kb on - strand at 469.712 kb on + strand at 469.713 kb on - strand at 469.830 kb on - strand at 469.919 kb on + strand, within DZA65_RS02140 at 469.919 kb on + strand, within DZA65_RS02140 at 469.920 kb on - strand, within DZA65_RS02140 at 469.950 kb on + strand, within DZA65_RS02140 at 469.952 kb on + strand, within DZA65_RS02140 at 470.006 kb on + strand, within DZA65_RS02140 at 470.006 kb on + strand, within DZA65_RS02140 at 470.007 kb on - strand, within DZA65_RS02140 at 470.007 kb on - strand, within DZA65_RS02140 at 470.240 kb on - strand, within DZA65_RS02140 at 470.326 kb on + strand, within DZA65_RS02140 at 470.334 kb on - strand, within DZA65_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 468,087 + -0.3 468,108 + -0.2 468,108 + -1.5 468,108 + +0.8 468,108 + +0.3 468,108 + +0.8 468,109 - -0.1 468,109 - -0.5 468,163 + +0.4 468,163 + +0.8 468,163 + +0.8 468,164 - -0.0 468,164 - -0.5 468,164 - +0.9 468,171 + -0.7 468,171 + -1.0 468,182 + -0.9 468,183 - -1.5 468,183 - -0.4 468,183 - -0.2 468,191 + +0.1 468,192 - +0.5 468,192 - +0.4 468,194 + -1.4 468,194 + -0.6 468,194 + -1.6 468,194 + -0.2 468,194 + -0.8 468,195 - +0.3 468,195 - -1.1 468,195 - -1.6 468,195 - +1.2 468,195 - +0.0 468,195 - +0.4 468,195 - +0.2 468,207 + -0.1 468,207 + +0.3 468,207 + +1.3 468,229 - +0.8 468,229 - -0.1 468,229 - +0.4 468,274 + +0.7 468,274 + +0.4 468,275 - +0.5 468,276 + +0.5 468,276 + +1.2 468,276 + -0.1 468,276 + -0.1 468,276 + -0.1 468,277 - -1.5 468,277 - +0.4 468,277 - +0.4 468,277 - +2.3 468,277 - -1.2 468,277 - -1.8 468,277 - -1.0 468,277 - -0.4 468,279 + -1.5 468,279 + +0.2 468,279 + -1.1 468,279 + +1.7 468,279 + -1.1 468,280 - -0.6 468,280 - -0.5 468,280 - -0.4 468,280 - -1.0 468,280 - +0.9 468,281 + +0.5 468,281 + +0.1 468,281 + +0.9 468,281 + -0.3 468,281 + +1.5 468,281 + -0.1 468,281 + -0.3 468,281 + -0.1 468,281 + -1.6 468,281 + +0.2 468,281 + -0.6 468,281 + -0.3 468,281 + -2.0 468,282 - +0.5 468,282 - -1.6 468,282 - -0.5 468,282 - -0.1 468,282 - -2.1 468,282 - -0.3 468,282 - +0.4 468,282 - +0.5 468,282 - -0.1 468,282 - +1.1 468,282 - -0.5 468,282 - +0.2 468,282 - +0.9 468,282 - +0.5 468,282 - +2.8 468,282 - -1.5 468,282 - -1.3 468,282 - -0.5 468,282 - -0.9 468,282 - -1.9 468,282 - +0.5 468,282 - +0.3 468,295 + +0.6 468,324 - +0.8 468,353 + +0.4 468,353 + -1.5 468,358 + -1.1 468,359 - +0.8 468,359 - -0.7 468,384 - -0.0 468,398 + -1.8 468,399 - -0.2 468,435 - +1.4 468,481 + +0.1 468,481 + -0.3 468,481 + -0.7 468,482 - +1.4 468,482 - +0.9 468,482 - +0.5 468,487 + -0.1 468,537 + -0.5 468,538 - +1.2 468,564 - -1.0 468,588 - +0.3 468,588 - +1.1 468,649 + -2.8 468,650 - +0.9 468,675 + +0.5 468,675 + +1.2 468,676 - +0.5 468,676 - -0.9 468,685 - -1.1 468,701 + +0.8 468,706 + -0.8 468,707 - -0.1 468,722 - +0.5 468,725 + +0.0 468,774 - +0.2 468,776 + +0.0 468,776 + -0.3 468,814 + DZA65_RS02130 0.19 +1.9 468,814 + DZA65_RS02130 0.19 +0.6 468,814 + DZA65_RS02130 0.19 -1.3 468,814 + DZA65_RS02130 0.19 +0.3 468,814 + DZA65_RS02130 0.19 +0.3 468,814 + DZA65_RS02130 0.19 -0.2 468,814 + DZA65_RS02130 0.19 -0.5 468,814 + DZA65_RS02130 0.19 -0.5 468,814 + DZA65_RS02130 0.19 -0.5 468,815 - DZA65_RS02130 0.19 -0.9 468,815 - DZA65_RS02130 0.19 -0.5 468,815 - DZA65_RS02130 0.19 -2.5 468,815 - DZA65_RS02130 0.19 -0.6 468,815 - DZA65_RS02130 0.19 -0.5 468,815 - DZA65_RS02130 0.19 -0.1 468,815 - DZA65_RS02130 0.19 -0.2 468,815 - DZA65_RS02130 0.19 -0.1 468,815 - DZA65_RS02130 0.19 -0.2 468,913 + DZA65_RS02130 0.47 -0.1 468,913 + DZA65_RS02130 0.47 +0.0 468,913 + DZA65_RS02130 0.47 +1.2 468,913 + DZA65_RS02130 0.47 -0.3 468,914 - DZA65_RS02130 0.47 +0.2 468,914 - DZA65_RS02130 0.47 +0.1 468,914 - DZA65_RS02130 0.47 -0.3 468,914 - DZA65_RS02130 0.47 -0.3 468,914 - DZA65_RS02130 0.47 -0.1 468,942 + DZA65_RS02130 0.55 -1.1 468,954 + DZA65_RS02130 0.59 +0.2 468,954 + DZA65_RS02130 0.59 +0.7 468,955 - DZA65_RS02130 0.59 +0.0 468,955 - DZA65_RS02130 0.59 +0.5 468,955 - DZA65_RS02130 0.59 -0.1 469,020 + DZA65_RS02130 0.78 +0.8 469,020 + DZA65_RS02130 0.78 -2.5 469,020 + DZA65_RS02130 0.78 -0.8 469,020 + DZA65_RS02130 0.78 +0.5 469,021 - DZA65_RS02130 0.78 -1.1 469,021 - DZA65_RS02130 0.78 -0.9 469,021 - DZA65_RS02130 0.78 +0.3 469,042 - DZA65_RS02130 0.84 -0.6 469,042 - DZA65_RS02130 0.84 -1.1 469,042 - DZA65_RS02130 0.84 -1.0 469,053 + DZA65_RS02130 0.87 +0.5 469,053 + DZA65_RS02130 0.87 -0.1 469,059 + +0.5 469,060 - DZA65_RS02130 0.89 +0.0 469,204 + DZA65_RS02135 0.38 -0.2 469,205 - DZA65_RS02135 0.38 +0.2 469,237 + DZA65_RS02135 0.48 -1.1 469,237 + DZA65_RS02135 0.48 -0.3 469,257 + DZA65_RS02135 0.54 +0.3 469,257 + DZA65_RS02135 0.54 +0.1 469,257 + DZA65_RS02135 0.54 -0.5 469,257 + DZA65_RS02135 0.54 -2.8 469,258 - DZA65_RS02135 0.54 -0.8 469,414 + +1.9 469,414 + -0.7 469,414 + +0.8 469,414 + -0.1 469,415 - +0.5 469,415 - +0.1 469,415 - +1.3 469,415 - -0.7 469,415 - +0.3 469,415 - +0.4 469,415 - +0.0 469,422 + -1.1 469,423 - +0.1 469,423 - -0.5 469,423 - -0.4 469,423 - -0.2 469,462 + -1.1 469,463 - -1.6 469,463 - +0.7 469,479 + -0.3 469,509 + +0.8 469,509 + -0.1 469,509 + -0.7 469,510 - +2.1 469,510 - -0.6 469,510 - -1.2 469,510 - -0.6 469,510 - +1.7 469,510 - -0.4 469,516 + -0.1 469,517 - -0.0 469,517 - +0.8 469,556 + +1.0 469,556 + +0.7 469,556 + -0.2 469,556 + -0.2 469,556 + -0.3 469,556 + -1.1 469,556 + +0.4 469,557 - -1.7 469,557 - -1.7 469,616 + -1.0 469,617 - +0.7 469,617 - +0.1 469,621 + -0.1 469,682 - -1.2 469,712 + -0.3 469,713 - +0.1 469,830 - -0.0 469,919 + DZA65_RS02140 0.13 -1.3 469,919 + DZA65_RS02140 0.13 -0.5 469,920 - DZA65_RS02140 0.13 +0.3 469,950 + DZA65_RS02140 0.15 +0.3 469,952 + DZA65_RS02140 0.15 -0.2 470,006 + DZA65_RS02140 0.18 -0.7 470,006 + DZA65_RS02140 0.18 -0.3 470,007 - DZA65_RS02140 0.18 -0.5 470,007 - DZA65_RS02140 0.18 +0.1 470,240 - DZA65_RS02140 0.32 -0.9 470,326 + DZA65_RS02140 0.37 -1.3 470,334 - DZA65_RS02140 0.37 -0.4
Or see this region's nucleotide sequence