Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02020 and DZA65_RS02025 are separated by 281 nucleotides DZA65_RS02025 and DZA65_RS02030 are separated by 126 nucleotides
DZA65_RS02020: DZA65_RS02020 - HAMP domain-containing protein, at 442,886 to 444,430
_RS02020
DZA65_RS02025: DZA65_RS02025 - ArgR family transcriptional regulator, at 444,712 to 445,209
_RS02025
DZA65_RS02030: DZA65_RS02030 - YfcC family protein, at 445,336 to 446,739
_RS02030
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.803 kb on + strand, within DZA65_RS02020 at 443.803 kb on + strand, within DZA65_RS02020 at 443.804 kb on - strand, within DZA65_RS02020 at 443.804 kb on - strand, within DZA65_RS02020 at 443.927 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 444.091 kb on + strand, within DZA65_RS02020 at 444.107 kb on - strand, within DZA65_RS02020 at 444.242 kb on - strand, within DZA65_RS02020 at 444.439 kb on + strand at 444.460 kb on + strand at 444.460 kb on + strand at 444.460 kb on + strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.468 kb on + strand at 444.469 kb on - strand at 444.469 kb on - strand at 444.572 kb on + strand at 444.572 kb on + strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.629 kb on + strand at 444.629 kb on + strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.675 kb on + strand at 444.675 kb on + strand at 444.675 kb on + strand at 444.675 kb on + strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.713 kb on + strand at 444.713 kb on + strand at 444.713 kb on + strand at 444.713 kb on + strand at 444.714 kb on - strand at 444.714 kb on - strand at 444.714 kb on - strand at 444.714 kb on - strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.722 kb on + strand at 444.722 kb on + strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.744 kb on + strand at 444.745 kb on - strand at 444.745 kb on - strand at 444.763 kb on + strand, within DZA65_RS02025 at 444.763 kb on + strand, within DZA65_RS02025 at 444.763 kb on + strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.907 kb on - strand, within DZA65_RS02025 at 444.918 kb on + strand, within DZA65_RS02025 at 444.918 kb on + strand, within DZA65_RS02025 at 444.919 kb on - strand, within DZA65_RS02025 at 444.919 kb on - strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 445.059 kb on + strand, within DZA65_RS02025 at 445.059 kb on + strand, within DZA65_RS02025 at 445.060 kb on - strand, within DZA65_RS02025 at 445.128 kb on - strand, within DZA65_RS02025 at 445.128 kb on - strand, within DZA65_RS02025 at 445.128 kb on - strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.140 kb on + strand, within DZA65_RS02025 at 445.140 kb on + strand, within DZA65_RS02025 at 445.143 kb on + strand, within DZA65_RS02025 at 445.143 kb on + strand, within DZA65_RS02025 at 445.143 kb on + strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.209 kb on + strand at 445.209 kb on + strand at 445.210 kb on - strand at 445.210 kb on - strand at 445.210 kb on - strand at 445.213 kb on + strand at 445.213 kb on + strand at 445.213 kb on + strand at 445.213 kb on + strand at 445.223 kb on + strand at 445.244 kb on + strand at 445.244 kb on + strand at 445.253 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.262 kb on - strand at 445.265 kb on + strand at 445.265 kb on + strand at 445.281 kb on + strand at 445.282 kb on - strand at 445.291 kb on + strand at 445.291 kb on + strand at 445.293 kb on + strand at 445.293 kb on + strand at 445.293 kb on + strand at 445.293 kb on + strand at 445.294 kb on - strand at 445.294 kb on - strand at 445.294 kb on - strand at 445.294 kb on - strand at 445.337 kb on + strand at 445.337 kb on + strand at 445.420 kb on + strand at 445.420 kb on + strand at 445.420 kb on + strand at 445.421 kb on - strand at 445.424 kb on + strand at 445.424 kb on + strand at 445.424 kb on + strand at 445.425 kb on - strand at 445.425 kb on - strand at 445.425 kb on - strand at 445.476 kb on + strand at 445.477 kb on - strand, within DZA65_RS02030 at 445.508 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.567 kb on - strand, within DZA65_RS02030 at 445.567 kb on - strand, within DZA65_RS02030 at 445.572 kb on + strand, within DZA65_RS02030 at 445.572 kb on + strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.607 kb on - strand, within DZA65_RS02030 at 445.621 kb on + strand, within DZA65_RS02030 at 445.621 kb on + strand, within DZA65_RS02030 at 445.621 kb on + strand at 445.621 kb on + strand, within DZA65_RS02030 at 445.621 kb on + strand, within DZA65_RS02030 at 445.622 kb on - strand, within DZA65_RS02030 at 445.678 kb on + strand, within DZA65_RS02030 at 445.679 kb on - strand, within DZA65_RS02030 at 445.679 kb on - strand, within DZA65_RS02030 at 445.679 kb on - strand, within DZA65_RS02030 at 445.701 kb on + strand, within DZA65_RS02030 at 445.701 kb on + strand, within DZA65_RS02030 at 445.725 kb on + strand, within DZA65_RS02030 at 445.834 kb on + strand, within DZA65_RS02030 at 445.835 kb on - strand, within DZA65_RS02030 at 445.835 kb on - strand, within DZA65_RS02030 at 445.910 kb on + strand, within DZA65_RS02030 at 445.910 kb on + strand, within DZA65_RS02030 at 445.911 kb on - strand, within DZA65_RS02030 at 445.911 kb on - strand, within DZA65_RS02030 at 445.948 kb on + strand, within DZA65_RS02030 at 445.992 kb on + strand, within DZA65_RS02030 at 445.992 kb on + strand, within DZA65_RS02030 at 445.993 kb on - strand, within DZA65_RS02030 at 446.087 kb on + strand, within DZA65_RS02030 at 446.087 kb on + strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.101 kb on + strand at 446.102 kb on - strand, within DZA65_RS02030 at 446.132 kb on - strand, within DZA65_RS02030 at 446.132 kb on - strand, within DZA65_RS02030 at 446.132 kb on - strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 443,803 + DZA65_RS02020 0.59 -0.3 443,803 + DZA65_RS02020 0.59 +0.5 443,804 - DZA65_RS02020 0.59 -0.3 443,804 - DZA65_RS02020 0.59 +1.0 443,927 - DZA65_RS02020 0.67 -0.1 443,939 - DZA65_RS02020 0.68 +1.1 443,939 - DZA65_RS02020 0.68 +0.8 443,939 - DZA65_RS02020 0.68 -1.1 443,939 - DZA65_RS02020 0.68 -0.1 443,939 - DZA65_RS02020 0.68 +0.9 444,091 + DZA65_RS02020 0.78 +0.3 444,107 - DZA65_RS02020 0.79 +0.3 444,242 - DZA65_RS02020 0.88 -0.8 444,439 + -0.3 444,460 + -0.8 444,460 + +0.8 444,460 + -0.1 444,461 - +0.6 444,461 - +0.9 444,461 - -1.1 444,461 - -0.7 444,461 - -0.5 444,461 - +0.3 444,468 + -0.1 444,469 - -0.0 444,469 - +0.8 444,572 + -0.1 444,572 + +0.2 444,573 - +0.1 444,573 - -1.6 444,573 - +0.5 444,573 - +1.3 444,573 - -1.1 444,629 + -0.0 444,629 + -0.0 444,630 - +0.4 444,630 - -1.4 444,630 - -0.7 444,630 - +0.4 444,630 - -0.2 444,675 + +0.1 444,675 + -0.2 444,675 + +0.2 444,675 + +0.0 444,676 - -0.3 444,676 - -0.1 444,676 - +0.0 444,676 - +0.2 444,676 - +0.4 444,676 - -1.1 444,676 - -0.1 444,676 - +0.9 444,676 - +0.5 444,676 - +0.7 444,676 - +0.5 444,713 + -2.3 444,713 + -0.2 444,713 + +0.9 444,713 + +0.1 444,714 - -2.6 444,714 - +0.8 444,714 - -0.5 444,714 - -0.5 444,720 + +0.5 444,720 + +0.5 444,720 + +1.5 444,720 + -0.8 444,720 + -0.8 444,720 + -0.3 444,720 + +1.2 444,720 + +0.9 444,720 + -0.9 444,721 - -0.6 444,721 - +0.1 444,721 - -0.2 444,721 - -0.7 444,721 - +0.4 444,721 - +0.3 444,721 - +0.5 444,721 - +0.8 444,722 + +0.8 444,722 + -0.1 444,723 - -0.5 444,723 - -0.5 444,723 - -0.5 444,723 - -0.5 444,723 - +1.1 444,723 - +1.0 444,744 + -1.9 444,745 - -0.1 444,745 - +1.4 444,763 + DZA65_RS02025 0.10 -0.7 444,763 + DZA65_RS02025 0.10 +0.5 444,763 + DZA65_RS02025 0.10 +0.9 444,764 - DZA65_RS02025 0.10 -0.4 444,764 - DZA65_RS02025 0.10 -1.1 444,764 - DZA65_RS02025 0.10 -2.6 444,764 - DZA65_RS02025 0.10 -0.7 444,832 + DZA65_RS02025 0.24 -0.5 444,832 + DZA65_RS02025 0.24 +0.4 444,832 + DZA65_RS02025 0.24 -0.5 444,832 + DZA65_RS02025 0.24 +0.1 444,833 - DZA65_RS02025 0.24 -0.5 444,833 - DZA65_RS02025 0.24 -0.5 444,833 - DZA65_RS02025 0.24 -1.3 444,833 - DZA65_RS02025 0.24 -0.2 444,907 - DZA65_RS02025 0.39 +0.1 444,918 + DZA65_RS02025 0.41 -0.3 444,918 + DZA65_RS02025 0.41 +0.2 444,919 - DZA65_RS02025 0.42 -0.1 444,919 - DZA65_RS02025 0.42 -0.5 444,931 + DZA65_RS02025 0.44 +0.6 444,931 + DZA65_RS02025 0.44 -0.2 444,931 + DZA65_RS02025 0.44 +0.5 444,931 + DZA65_RS02025 0.44 -0.8 444,931 + DZA65_RS02025 0.44 +0.5 444,931 + DZA65_RS02025 0.44 -0.3 444,931 + DZA65_RS02025 0.44 +1.5 444,931 + DZA65_RS02025 0.44 +0.5 444,931 + DZA65_RS02025 0.44 +0.6 444,931 + DZA65_RS02025 0.44 -0.5 444,931 + DZA65_RS02025 0.44 -0.1 444,932 - DZA65_RS02025 0.44 -0.3 444,932 - DZA65_RS02025 0.44 -1.1 444,932 - DZA65_RS02025 0.44 +0.2 444,932 - DZA65_RS02025 0.44 -0.4 444,932 - DZA65_RS02025 0.44 +0.9 444,932 - DZA65_RS02025 0.44 -0.5 444,932 - DZA65_RS02025 0.44 -2.3 444,932 - DZA65_RS02025 0.44 +0.4 444,932 - DZA65_RS02025 0.44 -1.1 444,932 - DZA65_RS02025 0.44 +0.2 445,059 + DZA65_RS02025 0.70 -0.5 445,059 + DZA65_RS02025 0.70 -0.4 445,060 - DZA65_RS02025 0.70 +0.1 445,128 - DZA65_RS02025 0.84 +0.0 445,128 - DZA65_RS02025 0.84 -0.6 445,128 - DZA65_RS02025 0.84 +0.2 445,131 + DZA65_RS02025 0.84 -1.1 445,131 + DZA65_RS02025 0.84 -1.1 445,131 + DZA65_RS02025 0.84 +0.4 445,131 + DZA65_RS02025 0.84 +0.3 445,131 + DZA65_RS02025 0.84 -0.1 445,131 + DZA65_RS02025 0.84 -0.3 445,131 + DZA65_RS02025 0.84 -0.5 445,131 + DZA65_RS02025 0.84 -0.1 445,131 + DZA65_RS02025 0.84 +0.1 445,132 - DZA65_RS02025 0.84 -0.2 445,132 - DZA65_RS02025 0.84 -0.3 445,132 - DZA65_RS02025 0.84 -0.9 445,132 - DZA65_RS02025 0.84 -0.9 445,132 - DZA65_RS02025 0.84 +0.7 445,140 + DZA65_RS02025 0.86 -0.2 445,140 + DZA65_RS02025 0.86 +0.1 445,143 + DZA65_RS02025 0.87 -0.1 445,143 + DZA65_RS02025 0.87 +0.0 445,143 + DZA65_RS02025 0.87 -0.2 445,144 - DZA65_RS02025 0.87 -0.7 445,144 - DZA65_RS02025 0.87 +0.2 445,144 - DZA65_RS02025 0.87 -0.6 445,144 - DZA65_RS02025 0.87 +1.9 445,144 - DZA65_RS02025 0.87 -0.6 445,209 + -0.6 445,209 + -0.7 445,210 - +1.9 445,210 - +0.4 445,210 - -2.1 445,213 + +0.1 445,213 + +0.3 445,213 + +0.1 445,213 + +0.4 445,223 + -0.3 445,244 + +0.8 445,244 + +0.7 445,253 + -1.7 445,261 + -1.1 445,261 + +1.1 445,261 + +0.3 445,261 + -1.8 445,261 + +1.3 445,261 + +0.7 445,261 + +0.2 445,261 + +0.2 445,261 + +0.3 445,262 - +0.5 445,265 + +0.0 445,265 + +0.1 445,281 + +1.5 445,282 - -0.2 445,291 + +0.8 445,291 + -2.3 445,293 + -1.6 445,293 + +0.3 445,293 + -0.3 445,293 + +0.7 445,294 - -0.7 445,294 - -1.1 445,294 - -0.3 445,294 - -0.2 445,337 + -0.0 445,337 + -0.4 445,420 + +0.1 445,420 + +0.4 445,420 + -2.3 445,421 - -0.7 445,424 + +0.3 445,424 + +0.7 445,424 + -0.8 445,425 - -1.8 445,425 - +0.1 445,425 - +0.4 445,476 + +0.7 445,477 - DZA65_RS02030 0.10 -1.1 445,508 + DZA65_RS02030 0.12 -0.5 445,566 + DZA65_RS02030 0.16 -0.9 445,566 + DZA65_RS02030 0.16 +0.7 445,566 + DZA65_RS02030 0.16 +1.4 445,566 + DZA65_RS02030 0.16 +0.6 445,566 + DZA65_RS02030 0.16 -2.9 445,566 + DZA65_RS02030 0.16 -2.1 445,566 + DZA65_RS02030 0.16 -0.7 445,567 - DZA65_RS02030 0.16 -0.5 445,567 - DZA65_RS02030 0.16 +0.2 445,572 + DZA65_RS02030 0.17 -0.7 445,572 + DZA65_RS02030 0.17 +0.5 445,573 - DZA65_RS02030 0.17 +0.1 445,573 - DZA65_RS02030 0.17 -0.1 445,573 - DZA65_RS02030 0.17 +1.5 445,573 - DZA65_RS02030 0.17 +0.2 445,573 - DZA65_RS02030 0.17 +0.0 445,573 - DZA65_RS02030 0.17 -1.2 445,607 - DZA65_RS02030 0.19 +1.4 445,621 + DZA65_RS02030 0.20 -0.4 445,621 + DZA65_RS02030 0.20 -1.8 445,621 + +1.7 445,621 + DZA65_RS02030 0.20 -0.3 445,621 + DZA65_RS02030 0.20 +1.5 445,622 - DZA65_RS02030 0.20 -1.2 445,678 + DZA65_RS02030 0.24 +0.9 445,679 - DZA65_RS02030 0.24 -2.8 445,679 - DZA65_RS02030 0.24 +1.4 445,679 - DZA65_RS02030 0.24 +0.5 445,701 + DZA65_RS02030 0.26 -0.7 445,701 + DZA65_RS02030 0.26 +1.0 445,725 + DZA65_RS02030 0.28 +1.0 445,834 + DZA65_RS02030 0.35 +0.9 445,835 - DZA65_RS02030 0.36 -0.1 445,835 - DZA65_RS02030 0.36 +0.3 445,910 + DZA65_RS02030 0.41 -0.3 445,910 + DZA65_RS02030 0.41 -1.1 445,911 - DZA65_RS02030 0.41 +1.6 445,911 - DZA65_RS02030 0.41 +0.4 445,948 + DZA65_RS02030 0.44 +0.2 445,992 + DZA65_RS02030 0.47 +0.6 445,992 + DZA65_RS02030 0.47 +0.2 445,993 - DZA65_RS02030 0.47 +0.3 446,087 + DZA65_RS02030 0.53 +0.9 446,087 + DZA65_RS02030 0.53 -0.2 446,088 - DZA65_RS02030 0.54 -0.2 446,088 - DZA65_RS02030 0.54 +0.5 446,088 - DZA65_RS02030 0.54 -0.3 446,088 - DZA65_RS02030 0.54 +0.8 446,088 - DZA65_RS02030 0.54 +0.3 446,088 - DZA65_RS02030 0.54 -0.1 446,101 + -0.1 446,102 - DZA65_RS02030 0.55 +0.9 446,132 - DZA65_RS02030 0.57 -0.1 446,132 - DZA65_RS02030 0.57 -0.8 446,132 - DZA65_RS02030 0.57 +1.0 446,155 + DZA65_RS02030 0.58 -0.6 446,155 + DZA65_RS02030 0.58 -0.3 446,155 + DZA65_RS02030 0.58 -2.1 446,155 + DZA65_RS02030 0.58 +0.2
Or see this region's nucleotide sequence