Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01740

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01735 and DZA65_RS01740 are separated by 12 nucleotidesDZA65_RS01740 and DZA65_RS01745 are separated by 64 nucleotidesDZA65_RS01745 and DZA65_RS01750 are separated by 276 nucleotides DZA65_RS01735: DZA65_RS01735 - DNA topoisomerase IV subunit B, at 376,160 to 378,055 _RS01735 DZA65_RS01740: DZA65_RS01740 - LysR family transcriptional regulator, at 378,068 to 378,963 _RS01740 DZA65_RS01745: DZA65_RS01745 - NAD(P)H-dependent oxidoreductase, at 379,028 to 379,609 _RS01745 DZA65_RS01750: DZA65_RS01750 - DNA topoisomerase IV subunit A, at 379,886 to 382,162 _RS01750 Position (kb) 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 378.196 kb on + strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.261 kb on + strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.430 kb on + strand, within DZA65_RS01740at 378.430 kb on + strand, within DZA65_RS01740at 378.431 kb on - strand, within DZA65_RS01740at 378.431 kb on - strand, within DZA65_RS01740at 378.484 kb on + strand, within DZA65_RS01740at 378.484 kb on + strand, within DZA65_RS01740at 378.581 kb on - strand, within DZA65_RS01740at 378.645 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.700 kb on + strand, within DZA65_RS01740at 378.700 kb on + strand, within DZA65_RS01740at 378.701 kb on - strand, within DZA65_RS01740at 378.710 kb on + strand, within DZA65_RS01740at 378.776 kb on + strand, within DZA65_RS01740at 378.792 kb on + strand, within DZA65_RS01740at 378.879 kb on - strandat 378.884 kb on - strandat 378.884 kb on - strandat 378.888 kb on + strandat 378.962 kb on - strandat 378.990 kb on + strandat 378.991 kb on - strandat 378.991 kb on - strandat 379.009 kb on + strandat 379.010 kb on - strandat 379.010 kb on - strandat 379.010 kb on - strandat 379.010 kb on - strandat 379.079 kb on + strandat 379.079 kb on + strandat 379.080 kb on - strandat 379.080 kb on - strandat 379.080 kb on - strandat 379.117 kb on + strand, within DZA65_RS01745at 379.117 kb on + strand, within DZA65_RS01745at 379.117 kb on + strand, within DZA65_RS01745at 379.117 kb on + strand, within DZA65_RS01745at 379.117 kb on + strand, within DZA65_RS01745at 379.118 kb on - strand, within DZA65_RS01745at 379.118 kb on - strand, within DZA65_RS01745at 379.118 kb on - strand, within DZA65_RS01745at 379.118 kb on - strand, within DZA65_RS01745at 379.118 kb on - strand, within DZA65_RS01745at 379.168 kb on - strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.254 kb on + strand, within DZA65_RS01745at 379.255 kb on - strand, within DZA65_RS01745at 379.255 kb on - strand, within DZA65_RS01745at 379.255 kb on - strand, within DZA65_RS01745at 379.255 kb on - strand, within DZA65_RS01745at 379.255 kb on - strand, within DZA65_RS01745at 379.255 kb on - strand, within DZA65_RS01745at 379.255 kb on - strand, within DZA65_RS01745at 379.287 kb on + strand, within DZA65_RS01745at 379.295 kb on - strand, within DZA65_RS01745at 379.295 kb on - strand, within DZA65_RS01745at 379.329 kb on + strand, within DZA65_RS01745at 379.330 kb on - strand, within DZA65_RS01745at 379.368 kb on + strand, within DZA65_RS01745at 379.369 kb on - strand, within DZA65_RS01745at 379.369 kb on - strand, within DZA65_RS01745at 379.369 kb on - strand, within DZA65_RS01745at 379.416 kb on + strand, within DZA65_RS01745at 379.417 kb on - strand, within DZA65_RS01745at 379.417 kb on - strand, within DZA65_RS01745at 379.417 kb on - strand, within DZA65_RS01745at 379.417 kb on - strand, within DZA65_RS01745at 379.544 kb on - strand, within DZA65_RS01745at 379.570 kb on + strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.599 kb on - strandat 379.603 kb on + strandat 379.604 kb on - strandat 379.604 kb on - strandat 379.631 kb on + strandat 379.631 kb on + strandat 379.632 kb on - strandat 379.632 kb on - strandat 379.639 kb on + strandat 379.639 kb on + strandat 379.639 kb on + strandat 379.639 kb on + strandat 379.639 kb on + strandat 379.639 kb on + strandat 379.640 kb on - strandat 379.640 kb on - strandat 379.640 kb on - strandat 379.640 kb on - strandat 379.646 kb on + strandat 379.646 kb on + strandat 379.646 kb on + strandat 379.647 kb on - strandat 379.647 kb on - strandat 379.647 kb on - strandat 379.647 kb on - strandat 379.659 kb on - strandat 379.666 kb on - strandat 379.666 kb on - strandat 379.721 kb on - strandat 379.721 kb on - strandat 379.721 kb on - strandat 379.791 kb on + strandat 379.794 kb on + strandat 379.794 kb on + strandat 379.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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378,196 + DZA65_RS01740 0.14 +0.1
378,197 - DZA65_RS01740 0.14 +0.9
378,197 - DZA65_RS01740 0.14 +0.3
378,197 - DZA65_RS01740 0.14 +0.1
378,197 - DZA65_RS01740 0.14 +0.4
378,261 + DZA65_RS01740 0.22 +0.6
378,262 - DZA65_RS01740 0.22 +0.9
378,262 - DZA65_RS01740 0.22 -0.2
378,262 - DZA65_RS01740 0.22 +1.6
378,262 - DZA65_RS01740 0.22 +0.4
378,262 - DZA65_RS01740 0.22 +0.8
378,262 - DZA65_RS01740 0.22 -0.1
378,430 + DZA65_RS01740 0.40 +0.4
378,430 + DZA65_RS01740 0.40 +0.3
378,431 - DZA65_RS01740 0.41 +0.9
378,431 - DZA65_RS01740 0.41 -1.0
378,484 + DZA65_RS01740 0.46 -1.1
378,484 + DZA65_RS01740 0.46 +0.5
378,581 - DZA65_RS01740 0.57 +0.2
378,645 + DZA65_RS01740 0.64 +0.6
378,697 + DZA65_RS01740 0.70 +0.0
378,697 + DZA65_RS01740 0.70 +2.1
378,697 + DZA65_RS01740 0.70 +0.1
378,697 + DZA65_RS01740 0.70 +1.3
378,698 - DZA65_RS01740 0.70 +0.7
378,698 - DZA65_RS01740 0.70 -0.3
378,698 - DZA65_RS01740 0.70 -0.3
378,698 - DZA65_RS01740 0.70 +0.6
378,700 + DZA65_RS01740 0.71 -0.3
378,700 + DZA65_RS01740 0.71 +1.0
378,701 - DZA65_RS01740 0.71 -0.4
378,710 + DZA65_RS01740 0.72 +0.1
378,776 + DZA65_RS01740 0.79 -0.6
378,792 + DZA65_RS01740 0.81 -0.0
378,879 - -0.2
378,884 - +0.1
378,884 - -0.4
378,888 + -1.0
378,962 - +0.4
378,990 + -0.5
378,991 - -0.4
378,991 - -1.2
379,009 + -3.3
379,010 - -0.1
379,010 - +0.2
379,010 - +0.7
379,010 - +1.1
379,079 + -0.8
379,079 + +1.4
379,080 - -0.0
379,080 - +1.6
379,080 - +0.2
379,117 + DZA65_RS01745 0.15 +1.6
379,117 + DZA65_RS01745 0.15 -0.8
379,117 + DZA65_RS01745 0.15 +0.2
379,117 + DZA65_RS01745 0.15 +0.4
379,117 + DZA65_RS01745 0.15 -0.2
379,118 - DZA65_RS01745 0.15 -0.9
379,118 - DZA65_RS01745 0.15 +0.3
379,118 - DZA65_RS01745 0.15 -1.2
379,118 - DZA65_RS01745 0.15 +0.6
379,118 - DZA65_RS01745 0.15 +0.3
379,168 - DZA65_RS01745 0.24 +0.6
379,254 + DZA65_RS01745 0.39 -0.9
379,254 + DZA65_RS01745 0.39 +0.1
379,254 + DZA65_RS01745 0.39 +0.1
379,254 + DZA65_RS01745 0.39 -0.1
379,254 + DZA65_RS01745 0.39 -0.3
379,254 + DZA65_RS01745 0.39 +0.9
379,254 + DZA65_RS01745 0.39 +1.6
379,254 + DZA65_RS01745 0.39 -0.7
379,255 - DZA65_RS01745 0.39 +0.3
379,255 - DZA65_RS01745 0.39 -1.4
379,255 - DZA65_RS01745 0.39 +0.5
379,255 - DZA65_RS01745 0.39 +1.4
379,255 - DZA65_RS01745 0.39 +0.7
379,255 - DZA65_RS01745 0.39 +0.2
379,255 - DZA65_RS01745 0.39 -1.4
379,287 + DZA65_RS01745 0.45 -0.4
379,295 - DZA65_RS01745 0.46 +0.4
379,295 - DZA65_RS01745 0.46 -0.6
379,329 + DZA65_RS01745 0.52 -0.5
379,330 - DZA65_RS01745 0.52 +0.0
379,368 + DZA65_RS01745 0.58 +0.6
379,369 - DZA65_RS01745 0.59 -1.2
379,369 - DZA65_RS01745 0.59 +1.9
379,369 - DZA65_RS01745 0.59 +0.6
379,416 + DZA65_RS01745 0.67 -1.8
379,417 - DZA65_RS01745 0.67 -1.4
379,417 - DZA65_RS01745 0.67 -0.2
379,417 - DZA65_RS01745 0.67 -0.3
379,417 - DZA65_RS01745 0.67 -0.8
379,544 - DZA65_RS01745 0.89 -0.6
379,570 + +0.2
379,598 + +0.9
379,598 + -0.8
379,598 + +0.4
379,598 + -0.8
379,598 + -0.1
379,598 + +1.0
379,598 + +0.0
379,599 - +0.1
379,599 - +0.4
379,599 - +0.1
379,599 - +1.6
379,599 - -0.1
379,599 - +0.2
379,599 - -0.1
379,599 - -2.6
379,599 - +0.0
379,603 + +1.4
379,604 - -0.4
379,604 - +0.1
379,631 + -1.6
379,631 + +0.7
379,632 - +0.1
379,632 - -0.6
379,639 + -1.0
379,639 + +0.0
379,639 + -2.2
379,639 + -0.6
379,639 + -1.0
379,639 + +0.3
379,640 - +0.6
379,640 - -0.2
379,640 - +0.1
379,640 - -1.4
379,646 + -0.6
379,646 + +0.8
379,646 + -1.6
379,647 - -0.1
379,647 - +0.6
379,647 - +2.1
379,647 - -0.4
379,659 - -0.0
379,666 - +0.9
379,666 - +1.6
379,721 - -1.6
379,721 - +1.9
379,721 - -0.8
379,791 + +0.5
379,794 + -1.2
379,794 + -0.0
379,875 - -0.6

Or see this region's nucleotide sequence