Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01735

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01725 and DZA65_RS01730 overlap by 1 nucleotidesDZA65_RS01730 and DZA65_RS01735 are separated by 186 nucleotidesDZA65_RS01735 and DZA65_RS01740 are separated by 12 nucleotidesDZA65_RS01740 and DZA65_RS01745 are separated by 64 nucleotides DZA65_RS01725: DZA65_RS01725 - 3',5'-cyclic-AMP phosphodiesterase, at 374,565 to 375,392 _RS01725 DZA65_RS01730: DZA65_RS01730 - esterase YqiA, at 375,392 to 375,973 _RS01730 DZA65_RS01735: DZA65_RS01735 - DNA topoisomerase IV subunit B, at 376,160 to 378,055 _RS01735 DZA65_RS01740: DZA65_RS01740 - LysR family transcriptional regulator, at 378,068 to 378,963 _RS01740 DZA65_RS01745: DZA65_RS01745 - NAD(P)H-dependent oxidoreductase, at 379,028 to 379,609 _RS01745 Position (kb) 376 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 375.174 kb on - strand, within DZA65_RS01725at 375.275 kb on + strand, within DZA65_RS01725at 375.275 kb on + strand, within DZA65_RS01725at 375.275 kb on + strand, within DZA65_RS01725at 375.275 kb on + strand, within DZA65_RS01725at 375.276 kb on - strand, within DZA65_RS01725at 375.276 kb on - strand, within DZA65_RS01725at 375.276 kb on - strand, within DZA65_RS01725at 375.276 kb on - strand, within DZA65_RS01725at 375.339 kb on + strandat 375.371 kb on + strandat 375.371 kb on + strandat 375.371 kb on + strandat 375.387 kb on + strandat 375.388 kb on - strandat 375.407 kb on + strandat 375.408 kb on - strandat 375.408 kb on - strandat 375.519 kb on - strand, within DZA65_RS01730at 375.609 kb on - strand, within DZA65_RS01730at 375.611 kb on + strand, within DZA65_RS01730at 375.611 kb on + strand, within DZA65_RS01730at 375.611 kb on + strand, within DZA65_RS01730at 375.612 kb on - strand, within DZA65_RS01730at 375.612 kb on - strand, within DZA65_RS01730at 375.612 kb on - strand, within DZA65_RS01730at 375.677 kb on + strand, within DZA65_RS01730at 375.677 kb on + strand, within DZA65_RS01730at 375.677 kb on + strand, within DZA65_RS01730at 375.677 kb on + strand, within DZA65_RS01730at 375.678 kb on - strand, within DZA65_RS01730at 375.678 kb on - strand, within DZA65_RS01730at 375.678 kb on - strand, within DZA65_RS01730at 375.719 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strandat 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strand, within DZA65_RS01730at 375.734 kb on + strandat 375.734 kb on + strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.735 kb on - strand, within DZA65_RS01730at 375.741 kb on + strand, within DZA65_RS01730at 375.741 kb on + strand, within DZA65_RS01730at 375.741 kb on + strand, within DZA65_RS01730at 375.741 kb on + strand, within DZA65_RS01730at 375.742 kb on - strand, within DZA65_RS01730at 375.742 kb on - strand, within DZA65_RS01730at 375.742 kb on - strand, within DZA65_RS01730at 375.758 kb on + strand, within DZA65_RS01730at 375.758 kb on + strand, within DZA65_RS01730at 375.758 kb on + strand, within DZA65_RS01730at 375.759 kb on - strand, within DZA65_RS01730at 375.845 kb on + strand, within DZA65_RS01730at 375.863 kb on + strand, within DZA65_RS01730at 375.863 kb on + strand, within DZA65_RS01730at 375.863 kb on + strand, within DZA65_RS01730at 375.863 kb on + strand, within DZA65_RS01730at 375.863 kb on + strand, within DZA65_RS01730at 375.863 kb on + strand, within DZA65_RS01730at 375.864 kb on - strand, within DZA65_RS01730at 375.866 kb on + strand, within DZA65_RS01730at 375.866 kb on + strand, within DZA65_RS01730at 375.866 kb on + strand, within DZA65_RS01730at 375.866 kb on + strand, within DZA65_RS01730at 375.866 kb on + strand, within DZA65_RS01730at 375.866 kb on + strand, within DZA65_RS01730at 375.867 kb on - strand, within DZA65_RS01730at 375.867 kb on - strand, within DZA65_RS01730at 375.867 kb on - strand, within DZA65_RS01730at 375.867 kb on - strand, within DZA65_RS01730at 375.901 kb on + strand, within DZA65_RS01730at 375.929 kb on + strandat 375.929 kb on + strandat 375.929 kb on + strandat 375.929 kb on + strandat 375.929 kb on + strandat 375.929 kb on + strandat 375.929 kb on + strandat 375.929 kb on + strandat 375.930 kb on - strandat 375.930 kb on - strandat 375.930 kb on - strandat 375.930 kb on - strandat 375.930 kb on - strandat 376.055 kb on + strandat 376.056 kb on - strandat 376.056 kb on - strandat 376.075 kb on - strandat 376.075 kb on - strandat 376.093 kb on + strandat 376.093 kb on + strandat 376.106 kb on + strandat 376.106 kb on + strandat 376.106 kb on + strandat 376.106 kb on + strandat 376.106 kb on + strandat 376.106 kb on + strandat 376.106 kb on + strandat 376.107 kb on - strandat 376.107 kb on - strandat 376.107 kb on - strandat 376.108 kb on + strandat 378.196 kb on + strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.197 kb on - strand, within DZA65_RS01740at 378.261 kb on + strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.262 kb on - strand, within DZA65_RS01740at 378.430 kb on + strand, within DZA65_RS01740at 378.430 kb on + strand, within DZA65_RS01740at 378.431 kb on - strand, within DZA65_RS01740at 378.431 kb on - strand, within DZA65_RS01740at 378.484 kb on + strand, within DZA65_RS01740at 378.484 kb on + strand, within DZA65_RS01740at 378.581 kb on - strand, within DZA65_RS01740at 378.645 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.697 kb on + strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.698 kb on - strand, within DZA65_RS01740at 378.700 kb on + strand, within DZA65_RS01740at 378.700 kb on + strand, within DZA65_RS01740at 378.701 kb on - strand, within DZA65_RS01740at 378.710 kb on + strand, within DZA65_RS01740at 378.776 kb on + strand, within DZA65_RS01740at 378.792 kb on + strand, within DZA65_RS01740at 378.879 kb on - strandat 378.884 kb on - strandat 378.884 kb on - strandat 378.888 kb on + strandat 378.962 kb on - strandat 378.990 kb on + strandat 378.991 kb on - strandat 378.991 kb on - strandat 379.009 kb on + strandat 379.010 kb on - strandat 379.010 kb on - strandat 379.010 kb on - strandat 379.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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375,174 - DZA65_RS01725 0.74 +0.8
375,275 + DZA65_RS01725 0.86 -0.5
375,275 + DZA65_RS01725 0.86 +0.2
375,275 + DZA65_RS01725 0.86 -1.2
375,275 + DZA65_RS01725 0.86 +0.0
375,276 - DZA65_RS01725 0.86 +0.1
375,276 - DZA65_RS01725 0.86 +1.0
375,276 - DZA65_RS01725 0.86 -0.0
375,276 - DZA65_RS01725 0.86 -0.8
375,339 + +0.6
375,371 + -0.5
375,371 + +0.7
375,371 + -0.2
375,387 + +0.6
375,388 - +0.6
375,407 + +0.4
375,408 - +0.1
375,408 - -0.1
375,519 - DZA65_RS01730 0.22 -0.4
375,609 - DZA65_RS01730 0.37 -1.4
375,611 + DZA65_RS01730 0.38 +0.6
375,611 + DZA65_RS01730 0.38 +0.9
375,611 + DZA65_RS01730 0.38 -0.2
375,612 - DZA65_RS01730 0.38 -1.8
375,612 - DZA65_RS01730 0.38 +0.1
375,612 - DZA65_RS01730 0.38 -0.4
375,677 + DZA65_RS01730 0.49 -0.7
375,677 + DZA65_RS01730 0.49 -0.8
375,677 + DZA65_RS01730 0.49 -1.8
375,677 + DZA65_RS01730 0.49 -0.0
375,678 - DZA65_RS01730 0.49 -0.5
375,678 - DZA65_RS01730 0.49 -0.0
375,678 - DZA65_RS01730 0.49 -0.4
375,719 + DZA65_RS01730 0.56 -0.4
375,734 + DZA65_RS01730 0.59 +0.6
375,734 + DZA65_RS01730 0.59 +0.6
375,734 + DZA65_RS01730 0.59 +0.6
375,734 + +0.6
375,734 + DZA65_RS01730 0.59 -0.4
375,734 + DZA65_RS01730 0.59 +1.1
375,734 + DZA65_RS01730 0.59 +0.8
375,734 + DZA65_RS01730 0.59 -0.5
375,734 + DZA65_RS01730 0.59 +0.6
375,734 + DZA65_RS01730 0.59 +0.6
375,734 + DZA65_RS01730 0.59 +0.3
375,734 + DZA65_RS01730 0.59 +0.6
375,734 + DZA65_RS01730 0.59 -0.9
375,734 + DZA65_RS01730 0.59 +1.0
375,734 + DZA65_RS01730 0.59 +0.5
375,734 + DZA65_RS01730 0.59 +0.6
375,734 + DZA65_RS01730 0.59 -1.6
375,734 + DZA65_RS01730 0.59 -0.2
375,734 + DZA65_RS01730 0.59 +0.7
375,734 + +0.6
375,734 + DZA65_RS01730 0.59 -0.0
375,735 - DZA65_RS01730 0.59 -0.4
375,735 - DZA65_RS01730 0.59 -1.2
375,735 - DZA65_RS01730 0.59 +0.3
375,735 - DZA65_RS01730 0.59 -0.1
375,735 - DZA65_RS01730 0.59 -1.0
375,735 - DZA65_RS01730 0.59 +1.3
375,735 - DZA65_RS01730 0.59 -0.0
375,735 - DZA65_RS01730 0.59 -0.6
375,735 - DZA65_RS01730 0.59 +0.2
375,735 - DZA65_RS01730 0.59 -0.9
375,735 - DZA65_RS01730 0.59 -1.1
375,735 - DZA65_RS01730 0.59 -0.6
375,735 - DZA65_RS01730 0.59 -0.2
375,735 - DZA65_RS01730 0.59 +0.9
375,735 - DZA65_RS01730 0.59 -1.2
375,741 + DZA65_RS01730 0.60 +0.7
375,741 + DZA65_RS01730 0.60 +0.7
375,741 + DZA65_RS01730 0.60 -0.8
375,741 + DZA65_RS01730 0.60 -0.1
375,742 - DZA65_RS01730 0.60 -0.9
375,742 - DZA65_RS01730 0.60 +0.6
375,742 - DZA65_RS01730 0.60 +1.8
375,758 + DZA65_RS01730 0.63 +0.6
375,758 + DZA65_RS01730 0.63 -0.3
375,758 + DZA65_RS01730 0.63 -1.8
375,759 - DZA65_RS01730 0.63 -1.2
375,845 + DZA65_RS01730 0.78 -0.5
375,863 + DZA65_RS01730 0.81 +0.3
375,863 + DZA65_RS01730 0.81 +0.2
375,863 + DZA65_RS01730 0.81 -1.9
375,863 + DZA65_RS01730 0.81 -1.4
375,863 + DZA65_RS01730 0.81 -0.3
375,863 + DZA65_RS01730 0.81 +0.7
375,864 - DZA65_RS01730 0.81 +0.1
375,866 + DZA65_RS01730 0.81 +0.1
375,866 + DZA65_RS01730 0.81 -0.4
375,866 + DZA65_RS01730 0.81 -0.3
375,866 + DZA65_RS01730 0.81 -0.5
375,866 + DZA65_RS01730 0.81 -0.7
375,866 + DZA65_RS01730 0.81 -0.5
375,867 - DZA65_RS01730 0.82 -1.0
375,867 - DZA65_RS01730 0.82 +0.7
375,867 - DZA65_RS01730 0.82 +2.3
375,867 - DZA65_RS01730 0.82 +0.0
375,901 + DZA65_RS01730 0.87 -0.7
375,929 + +1.9
375,929 + -0.1
375,929 + +0.9
375,929 + -0.7
375,929 + +0.1
375,929 + +0.1
375,929 + +0.4
375,929 + -1.4
375,930 - -1.0
375,930 - -0.7
375,930 - +0.1
375,930 - +0.1
375,930 - +0.6
376,055 + +0.4
376,056 - +1.6
376,056 - -0.0
376,075 - +1.4
376,075 - +0.4
376,093 + -0.2
376,093 + +2.1
376,106 + +0.6
376,106 + +0.2
376,106 + -0.7
376,106 + -0.4
376,106 + -0.2
376,106 + -0.8
376,106 + -0.9
376,107 - -2.2
376,107 - -1.2
376,107 - -1.0
376,108 + -2.0
378,196 + DZA65_RS01740 0.14 +0.1
378,197 - DZA65_RS01740 0.14 +0.9
378,197 - DZA65_RS01740 0.14 +0.3
378,197 - DZA65_RS01740 0.14 +0.1
378,197 - DZA65_RS01740 0.14 +0.4
378,261 + DZA65_RS01740 0.22 +0.6
378,262 - DZA65_RS01740 0.22 +0.9
378,262 - DZA65_RS01740 0.22 -0.2
378,262 - DZA65_RS01740 0.22 +1.6
378,262 - DZA65_RS01740 0.22 +0.4
378,262 - DZA65_RS01740 0.22 +0.8
378,262 - DZA65_RS01740 0.22 -0.1
378,430 + DZA65_RS01740 0.40 +0.4
378,430 + DZA65_RS01740 0.40 +0.3
378,431 - DZA65_RS01740 0.41 +0.9
378,431 - DZA65_RS01740 0.41 -1.0
378,484 + DZA65_RS01740 0.46 -1.1
378,484 + DZA65_RS01740 0.46 +0.5
378,581 - DZA65_RS01740 0.57 +0.2
378,645 + DZA65_RS01740 0.64 +0.6
378,697 + DZA65_RS01740 0.70 +0.0
378,697 + DZA65_RS01740 0.70 +2.1
378,697 + DZA65_RS01740 0.70 +0.1
378,697 + DZA65_RS01740 0.70 +1.3
378,698 - DZA65_RS01740 0.70 +0.7
378,698 - DZA65_RS01740 0.70 -0.3
378,698 - DZA65_RS01740 0.70 -0.3
378,698 - DZA65_RS01740 0.70 +0.6
378,700 + DZA65_RS01740 0.71 -0.3
378,700 + DZA65_RS01740 0.71 +1.0
378,701 - DZA65_RS01740 0.71 -0.4
378,710 + DZA65_RS01740 0.72 +0.1
378,776 + DZA65_RS01740 0.79 -0.6
378,792 + DZA65_RS01740 0.81 -0.0
378,879 - -0.2
378,884 - +0.1
378,884 - -0.4
378,888 + -1.0
378,962 - +0.4
378,990 + -0.5
378,991 - -0.4
378,991 - -1.2
379,009 + -3.3
379,010 - -0.1
379,010 - +0.2
379,010 - +0.7
379,010 - +1.1

Or see this region's nucleotide sequence