Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01725 and DZA65_RS01730 overlap by 1 nucleotides DZA65_RS01730 and DZA65_RS01735 are separated by 186 nucleotides
DZA65_RS01725: DZA65_RS01725 - 3',5'-cyclic-AMP phosphodiesterase, at 374,565 to 375,392
_RS01725
DZA65_RS01730: DZA65_RS01730 - esterase YqiA, at 375,392 to 375,973
_RS01730
DZA65_RS01735: DZA65_RS01735 - DNA topoisomerase IV subunit B, at 376,160 to 378,055
_RS01735
Position (kb) 375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 374.449 kb on + strand at 374.449 kb on + strand at 374.449 kb on + strand at 374.450 kb on - strand at 374.450 kb on - strand at 374.509 kb on + strand at 374.510 kb on - strand at 374.513 kb on + strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.514 kb on - strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.521 kb on + strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.522 kb on - strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.562 kb on + strand at 374.563 kb on - strand at 374.563 kb on - strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.623 kb on + strand at 374.624 kb on - strand at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.675 kb on + strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.676 kb on - strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.679 kb on + strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.680 kb on - strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.771 kb on + strand, within DZA65_RS01725 at 374.772 kb on - strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.784 kb on + strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.785 kb on - strand, within DZA65_RS01725 at 374.804 kb on + strand, within DZA65_RS01725 at 374.805 kb on - strand, within DZA65_RS01725 at 375.039 kb on - strand, within DZA65_RS01725 at 375.039 kb on - strand, within DZA65_RS01725 at 375.039 kb on - strand, within DZA65_RS01725 at 375.047 kb on - strand, within DZA65_RS01725 at 375.080 kb on + strand, within DZA65_RS01725 at 375.081 kb on - strand, within DZA65_RS01725 at 375.174 kb on - strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.275 kb on + strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.276 kb on - strand, within DZA65_RS01725 at 375.339 kb on + strand at 375.371 kb on + strand at 375.371 kb on + strand at 375.371 kb on + strand at 375.387 kb on + strand at 375.388 kb on - strand at 375.407 kb on + strand at 375.408 kb on - strand at 375.408 kb on - strand at 375.519 kb on - strand, within DZA65_RS01730 at 375.609 kb on - strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.611 kb on + strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.612 kb on - strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.677 kb on + strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.678 kb on - strand, within DZA65_RS01730 at 375.719 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand, within DZA65_RS01730 at 375.734 kb on + strand at 375.734 kb on + strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.735 kb on - strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.741 kb on + strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.742 kb on - strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.758 kb on + strand, within DZA65_RS01730 at 375.759 kb on - strand, within DZA65_RS01730 at 375.845 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.863 kb on + strand, within DZA65_RS01730 at 375.864 kb on - strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.866 kb on + strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.867 kb on - strand, within DZA65_RS01730 at 375.901 kb on + strand, within DZA65_RS01730 at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.929 kb on + strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 375.930 kb on - strand at 376.055 kb on + strand at 376.056 kb on - strand at 376.056 kb on - strand at 376.075 kb on - strand at 376.075 kb on - strand at 376.093 kb on + strand at 376.093 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.106 kb on + strand at 376.107 kb on - strand at 376.107 kb on - strand at 376.107 kb on - strand at 376.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 374,449 + -0.8 374,449 + +0.2 374,449 + +1.0 374,450 - +0.2 374,450 - +1.3 374,509 + -0.2 374,510 - -1.1 374,513 + +0.1 374,514 - +1.0 374,514 - +0.1 374,514 - +1.1 374,521 + -0.1 374,521 + +0.4 374,521 + +0.6 374,521 + +0.3 374,521 + -1.0 374,521 + +0.1 374,521 + +0.4 374,521 + -0.3 374,521 + -0.9 374,521 + -1.0 374,521 + -0.7 374,521 + -1.6 374,521 + +0.9 374,521 + -1.0 374,521 + -1.6 374,522 - -0.9 374,522 - -0.9 374,522 - +0.1 374,522 - +0.2 374,522 - -0.1 374,522 - +0.9 374,522 - -0.0 374,522 - -0.4 374,522 - -1.8 374,522 - +0.1 374,522 - -0.4 374,522 - +0.7 374,522 - +0.3 374,522 - -1.7 374,562 + +0.7 374,562 + +0.4 374,562 + +0.1 374,563 - -0.3 374,563 - -0.8 374,623 + -0.2 374,623 + -0.4 374,623 + +0.4 374,623 + +1.7 374,624 - +0.7 374,675 + DZA65_RS01725 0.13 -1.1 374,675 + DZA65_RS01725 0.13 +0.6 374,675 + DZA65_RS01725 0.13 -2.8 374,675 + DZA65_RS01725 0.13 +0.1 374,675 + DZA65_RS01725 0.13 +0.4 374,676 - DZA65_RS01725 0.13 +1.0 374,676 - DZA65_RS01725 0.13 -0.6 374,676 - DZA65_RS01725 0.13 +0.6 374,676 - DZA65_RS01725 0.13 +1.1 374,676 - DZA65_RS01725 0.13 +0.1 374,679 + DZA65_RS01725 0.14 +0.7 374,679 + DZA65_RS01725 0.14 +0.0 374,679 + DZA65_RS01725 0.14 -0.4 374,680 - DZA65_RS01725 0.14 -1.4 374,680 - DZA65_RS01725 0.14 -0.4 374,680 - DZA65_RS01725 0.14 +1.0 374,680 - DZA65_RS01725 0.14 +0.8 374,771 + DZA65_RS01725 0.25 -1.0 374,771 + DZA65_RS01725 0.25 +0.8 374,772 - DZA65_RS01725 0.25 +0.2 374,784 + DZA65_RS01725 0.26 -0.6 374,784 + DZA65_RS01725 0.26 -0.9 374,784 + DZA65_RS01725 0.26 +0.7 374,784 + DZA65_RS01725 0.26 +0.3 374,784 + DZA65_RS01725 0.26 -0.4 374,785 - DZA65_RS01725 0.27 +0.1 374,785 - DZA65_RS01725 0.27 +0.1 374,785 - DZA65_RS01725 0.27 +0.5 374,785 - DZA65_RS01725 0.27 +1.3 374,785 - DZA65_RS01725 0.27 +0.7 374,785 - DZA65_RS01725 0.27 -0.7 374,785 - DZA65_RS01725 0.27 -0.8 374,785 - DZA65_RS01725 0.27 -1.6 374,804 + DZA65_RS01725 0.29 -0.2 374,805 - DZA65_RS01725 0.29 -0.0 375,039 - DZA65_RS01725 0.57 -0.9 375,039 - DZA65_RS01725 0.57 +0.5 375,039 - DZA65_RS01725 0.57 +0.5 375,047 - DZA65_RS01725 0.58 -0.4 375,080 + DZA65_RS01725 0.62 +0.2 375,081 - DZA65_RS01725 0.62 -0.4 375,174 - DZA65_RS01725 0.74 +0.8 375,275 + DZA65_RS01725 0.86 -0.5 375,275 + DZA65_RS01725 0.86 +0.2 375,275 + DZA65_RS01725 0.86 -1.2 375,275 + DZA65_RS01725 0.86 +0.0 375,276 - DZA65_RS01725 0.86 +0.1 375,276 - DZA65_RS01725 0.86 +1.0 375,276 - DZA65_RS01725 0.86 -0.0 375,276 - DZA65_RS01725 0.86 -0.8 375,339 + +0.6 375,371 + -0.5 375,371 + +0.7 375,371 + -0.2 375,387 + +0.6 375,388 - +0.6 375,407 + +0.4 375,408 - +0.1 375,408 - -0.1 375,519 - DZA65_RS01730 0.22 -0.4 375,609 - DZA65_RS01730 0.37 -1.4 375,611 + DZA65_RS01730 0.38 +0.6 375,611 + DZA65_RS01730 0.38 +0.9 375,611 + DZA65_RS01730 0.38 -0.2 375,612 - DZA65_RS01730 0.38 -1.8 375,612 - DZA65_RS01730 0.38 +0.1 375,612 - DZA65_RS01730 0.38 -0.4 375,677 + DZA65_RS01730 0.49 -0.7 375,677 + DZA65_RS01730 0.49 -0.8 375,677 + DZA65_RS01730 0.49 -1.8 375,677 + DZA65_RS01730 0.49 -0.0 375,678 - DZA65_RS01730 0.49 -0.5 375,678 - DZA65_RS01730 0.49 -0.0 375,678 - DZA65_RS01730 0.49 -0.4 375,719 + DZA65_RS01730 0.56 -0.4 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + +0.6 375,734 + DZA65_RS01730 0.59 -0.4 375,734 + DZA65_RS01730 0.59 +1.1 375,734 + DZA65_RS01730 0.59 +0.8 375,734 + DZA65_RS01730 0.59 -0.5 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 +0.3 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 -0.9 375,734 + DZA65_RS01730 0.59 +1.0 375,734 + DZA65_RS01730 0.59 +0.5 375,734 + DZA65_RS01730 0.59 +0.6 375,734 + DZA65_RS01730 0.59 -1.6 375,734 + DZA65_RS01730 0.59 -0.2 375,734 + DZA65_RS01730 0.59 +0.7 375,734 + +0.6 375,734 + DZA65_RS01730 0.59 -0.0 375,735 - DZA65_RS01730 0.59 -0.4 375,735 - DZA65_RS01730 0.59 -1.2 375,735 - DZA65_RS01730 0.59 +0.3 375,735 - DZA65_RS01730 0.59 -0.1 375,735 - DZA65_RS01730 0.59 -1.0 375,735 - DZA65_RS01730 0.59 +1.3 375,735 - DZA65_RS01730 0.59 -0.0 375,735 - DZA65_RS01730 0.59 -0.6 375,735 - DZA65_RS01730 0.59 +0.2 375,735 - DZA65_RS01730 0.59 -0.9 375,735 - DZA65_RS01730 0.59 -1.1 375,735 - DZA65_RS01730 0.59 -0.6 375,735 - DZA65_RS01730 0.59 -0.2 375,735 - DZA65_RS01730 0.59 +0.9 375,735 - DZA65_RS01730 0.59 -1.2 375,741 + DZA65_RS01730 0.60 +0.7 375,741 + DZA65_RS01730 0.60 +0.7 375,741 + DZA65_RS01730 0.60 -0.8 375,741 + DZA65_RS01730 0.60 -0.1 375,742 - DZA65_RS01730 0.60 -0.9 375,742 - DZA65_RS01730 0.60 +0.6 375,742 - DZA65_RS01730 0.60 +1.8 375,758 + DZA65_RS01730 0.63 +0.6 375,758 + DZA65_RS01730 0.63 -0.3 375,758 + DZA65_RS01730 0.63 -1.8 375,759 - DZA65_RS01730 0.63 -1.2 375,845 + DZA65_RS01730 0.78 -0.5 375,863 + DZA65_RS01730 0.81 +0.3 375,863 + DZA65_RS01730 0.81 +0.2 375,863 + DZA65_RS01730 0.81 -1.9 375,863 + DZA65_RS01730 0.81 -1.4 375,863 + DZA65_RS01730 0.81 -0.3 375,863 + DZA65_RS01730 0.81 +0.7 375,864 - DZA65_RS01730 0.81 +0.1 375,866 + DZA65_RS01730 0.81 +0.1 375,866 + DZA65_RS01730 0.81 -0.4 375,866 + DZA65_RS01730 0.81 -0.3 375,866 + DZA65_RS01730 0.81 -0.5 375,866 + DZA65_RS01730 0.81 -0.7 375,866 + DZA65_RS01730 0.81 -0.5 375,867 - DZA65_RS01730 0.82 -1.0 375,867 - DZA65_RS01730 0.82 +0.7 375,867 - DZA65_RS01730 0.82 +2.3 375,867 - DZA65_RS01730 0.82 +0.0 375,901 + DZA65_RS01730 0.87 -0.7 375,929 + +1.9 375,929 + -0.1 375,929 + +0.9 375,929 + -0.7 375,929 + +0.1 375,929 + +0.1 375,929 + +0.4 375,929 + -1.4 375,930 - -1.0 375,930 - -0.7 375,930 - +0.1 375,930 - +0.1 375,930 - +0.6 376,055 + +0.4 376,056 - +1.6 376,056 - -0.0 376,075 - +1.4 376,075 - +0.4 376,093 + -0.2 376,093 + +2.1 376,106 + +0.6 376,106 + +0.2 376,106 + -0.7 376,106 + -0.4 376,106 + -0.2 376,106 + -0.8 376,106 + -0.9 376,107 - -2.2 376,107 - -1.2 376,107 - -1.0 376,108 + -2.0
Or see this region's nucleotide sequence