Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01685 and DZA65_RS01695 are separated by 598 nucleotides DZA65_RS01695 and DZA65_RS01700 are separated by 170 nucleotides
DZA65_RS01685: DZA65_RS01685 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 366,926 to 367,795
_RS01685
DZA65_RS01695: DZA65_RS01695 - 4,5-DOPA dioxygenase extradiol, at 368,394 to 369,182
_RS01695
DZA65_RS01700: DZA65_RS01700 - glutathionylspermidine synthase family protein, at 369,353 to 370,513
_RS01700
Position (kb) 368
369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 367.456 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.542 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.794 kb on - strand at 367.794 kb on - strand at 368.252 kb on - strand at 368.321 kb on + strand at 368.335 kb on + strand at 368.335 kb on + strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.341 kb on + strand at 368.341 kb on + strand at 368.342 kb on - strand at 368.342 kb on - strand at 368.346 kb on + strand at 368.346 kb on + strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.363 kb on + strand at 368.363 kb on + strand at 368.372 kb on + strand at 368.381 kb on + strand at 368.393 kb on + strand at 368.393 kb on + strand at 368.466 kb on + strand at 368.466 kb on + strand at 368.467 kb on - strand at 368.467 kb on - strand at 368.483 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.544 kb on - strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.574 kb on - strand, within DZA65_RS01695 at 368.661 kb on - strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.698 kb on - strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.818 kb on - strand, within DZA65_RS01695 at 368.818 kb on - strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.023 kb on + strand, within DZA65_RS01695 at 369.024 kb on - strand, within DZA65_RS01695 at 369.084 kb on + strand, within DZA65_RS01695 at 369.084 kb on + strand, within DZA65_RS01695 at 369.084 kb on + strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.085 kb on - strand, within DZA65_RS01695 at 369.211 kb on + strand at 369.211 kb on + strand at 369.212 kb on - strand at 369.212 kb on - strand at 369.212 kb on - strand at 369.212 kb on - strand at 369.229 kb on + strand at 369.230 kb on - strand at 369.247 kb on - strand at 369.247 kb on - strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.253 kb on + strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.254 kb on - strand at 369.270 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.289 kb on - strand at 369.308 kb on - strand at 369.308 kb on - strand at 369.308 kb on - strand at 369.308 kb on - strand at 369.345 kb on + strand at 369.367 kb on + strand at 369.367 kb on + strand at 369.367 kb on + strand at 369.368 kb on - strand at 369.368 kb on - strand at 369.368 kb on - strand at 369.375 kb on + strand at 369.375 kb on + strand at 369.376 kb on - strand at 369.398 kb on - strand at 369.398 kb on - strand at 369.398 kb on - strand at 369.398 kb on - strand at 369.471 kb on + strand, within DZA65_RS01700 at 369.471 kb on + strand, within DZA65_RS01700 at 369.471 kb on + strand, within DZA65_RS01700 at 369.471 kb on + strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.472 kb on - strand, within DZA65_RS01700 at 369.532 kb on - strand, within DZA65_RS01700 at 369.578 kb on + strand, within DZA65_RS01700 at 369.578 kb on + strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.579 kb on - strand, within DZA65_RS01700 at 369.618 kb on + strand, within DZA65_RS01700 at 369.618 kb on + strand, within DZA65_RS01700 at 369.618 kb on + strand, within DZA65_RS01700 at 369.619 kb on - strand, within DZA65_RS01700 at 369.619 kb on - strand, within DZA65_RS01700 at 369.619 kb on - strand, within DZA65_RS01700 at 369.654 kb on + strand, within DZA65_RS01700 at 369.654 kb on + strand, within DZA65_RS01700 at 369.654 kb on + strand, within DZA65_RS01700 at 369.655 kb on - strand, within DZA65_RS01700 at 369.655 kb on - strand at 369.848 kb on + strand, within DZA65_RS01700 at 369.848 kb on + strand, within DZA65_RS01700 at 369.848 kb on + strand, within DZA65_RS01700 at 369.849 kb on - strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.894 kb on + strand, within DZA65_RS01700 at 369.895 kb on - strand, within DZA65_RS01700 at 369.895 kb on - strand, within DZA65_RS01700 at 369.895 kb on - strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.942 kb on + strand, within DZA65_RS01700 at 369.943 kb on - strand, within DZA65_RS01700 at 369.943 kb on - strand, within DZA65_RS01700 at 369.995 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.024 kb on - strand, within DZA65_RS01700 at 370.057 kb on + strand, within DZA65_RS01700 at 370.057 kb on + strand, within DZA65_RS01700 at 370.057 kb on + strand, within DZA65_RS01700 at 370.058 kb on - strand, within DZA65_RS01700 at 370.058 kb on - strand, within DZA65_RS01700 at 370.058 kb on - strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.062 kb on + strand, within DZA65_RS01700 at 370.063 kb on - strand, within DZA65_RS01700 at 370.063 kb on - strand, within DZA65_RS01700 at 370.063 kb on - strand, within DZA65_RS01700 at 370.140 kb on + strand, within DZA65_RS01700 at 370.140 kb on + strand, within DZA65_RS01700 at 370.141 kb on - strand, within DZA65_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 367,456 + DZA65_RS01685 0.61 -0.2 367,496 + DZA65_RS01685 0.66 +1.9 367,496 + DZA65_RS01685 0.66 +1.8 367,496 + DZA65_RS01685 0.66 -0.7 367,497 - DZA65_RS01685 0.66 +0.1 367,497 - DZA65_RS01685 0.66 -0.9 367,542 - DZA65_RS01685 0.71 -0.9 367,618 - DZA65_RS01685 0.80 -0.4 367,618 - DZA65_RS01685 0.80 -0.1 367,669 + DZA65_RS01685 0.85 -0.3 367,669 + DZA65_RS01685 0.85 -1.2 367,669 + DZA65_RS01685 0.85 -1.0 367,670 - DZA65_RS01685 0.86 +0.7 367,670 - DZA65_RS01685 0.86 -1.2 367,670 - DZA65_RS01685 0.86 -0.2 367,670 - DZA65_RS01685 0.86 +0.1 367,670 - DZA65_RS01685 0.86 -0.8 367,670 - DZA65_RS01685 0.86 -1.6 367,670 - DZA65_RS01685 0.86 -0.2 367,670 - DZA65_RS01685 0.86 +0.3 367,794 - +0.0 367,794 - -0.8 368,252 - +0.1 368,321 + -1.2 368,335 + -0.4 368,335 + +0.4 368,336 - +1.8 368,336 - -0.1 368,336 - +0.4 368,341 + -0.2 368,341 + +0.2 368,342 - +0.6 368,342 - -0.3 368,346 + +0.2 368,346 + -0.2 368,347 - -1.4 368,347 - -0.9 368,347 - +0.1 368,347 - -1.0 368,347 - -1.4 368,347 - +0.3 368,347 - +0.0 368,347 - -0.4 368,347 - +0.1 368,347 - -0.3 368,363 + -0.6 368,363 + +0.6 368,372 + -0.3 368,381 + +0.3 368,393 + +0.0 368,393 + +1.4 368,466 + -0.6 368,466 + +1.0 368,467 - -0.4 368,467 - +1.6 368,483 + DZA65_RS01695 0.11 +0.7 368,541 + DZA65_RS01695 0.19 -0.5 368,541 + DZA65_RS01695 0.19 +0.8 368,541 + DZA65_RS01695 0.19 -0.6 368,541 + DZA65_RS01695 0.19 +0.3 368,541 + DZA65_RS01695 0.19 -1.8 368,541 + DZA65_RS01695 0.19 +0.2 368,542 - DZA65_RS01695 0.19 -0.4 368,542 - DZA65_RS01695 0.19 -0.9 368,542 - DZA65_RS01695 0.19 +0.2 368,542 - DZA65_RS01695 0.19 +0.6 368,544 - DZA65_RS01695 0.19 +0.7 368,573 + DZA65_RS01695 0.23 +0.5 368,573 + DZA65_RS01695 0.23 +1.1 368,574 - DZA65_RS01695 0.23 -0.2 368,661 - DZA65_RS01695 0.34 -0.5 368,697 + DZA65_RS01695 0.38 +0.2 368,697 + DZA65_RS01695 0.38 +0.6 368,698 - DZA65_RS01695 0.39 +0.0 368,789 + DZA65_RS01695 0.50 -1.1 368,789 + DZA65_RS01695 0.50 -0.2 368,789 + DZA65_RS01695 0.50 -0.0 368,789 + DZA65_RS01695 0.50 -0.3 368,789 + DZA65_RS01695 0.50 -0.2 368,790 - DZA65_RS01695 0.50 +0.6 368,790 - DZA65_RS01695 0.50 -0.1 368,790 - DZA65_RS01695 0.50 +0.3 368,790 - DZA65_RS01695 0.50 +0.6 368,790 - DZA65_RS01695 0.50 -2.9 368,790 - DZA65_RS01695 0.50 +0.6 368,790 - DZA65_RS01695 0.50 +1.1 368,818 - DZA65_RS01695 0.54 -1.0 368,818 - DZA65_RS01695 0.54 -0.7 369,023 + DZA65_RS01695 0.80 +0.6 369,023 + DZA65_RS01695 0.80 +0.3 369,023 + DZA65_RS01695 0.80 +0.0 369,023 + DZA65_RS01695 0.80 -0.3 369,023 + DZA65_RS01695 0.80 +0.4 369,023 + DZA65_RS01695 0.80 -1.0 369,023 + DZA65_RS01695 0.80 -1.3 369,024 - DZA65_RS01695 0.80 -0.1 369,084 + DZA65_RS01695 0.87 -0.2 369,084 + DZA65_RS01695 0.87 -1.4 369,084 + DZA65_RS01695 0.87 +0.4 369,085 - DZA65_RS01695 0.88 +0.4 369,085 - DZA65_RS01695 0.88 -0.3 369,085 - DZA65_RS01695 0.88 -0.1 369,085 - DZA65_RS01695 0.88 +0.4 369,085 - DZA65_RS01695 0.88 +0.3 369,085 - DZA65_RS01695 0.88 +1.6 369,085 - DZA65_RS01695 0.88 -0.3 369,085 - DZA65_RS01695 0.88 -0.6 369,085 - DZA65_RS01695 0.88 +1.0 369,085 - DZA65_RS01695 0.88 +0.3 369,085 - DZA65_RS01695 0.88 -0.4 369,085 - DZA65_RS01695 0.88 -0.3 369,085 - DZA65_RS01695 0.88 +0.2 369,085 - DZA65_RS01695 0.88 -0.3 369,211 + -0.2 369,211 + -0.4 369,212 - +0.2 369,212 - -0.4 369,212 - -0.6 369,212 - -1.6 369,229 + +0.3 369,230 - -1.0 369,247 - +0.4 369,247 - -0.7 369,250 + -0.9 369,250 + +1.2 369,250 + +0.8 369,250 + -0.7 369,250 + +0.4 369,250 + -0.1 369,251 - +0.8 369,251 - +0.4 369,251 - +1.4 369,251 - -0.8 369,251 - -0.3 369,251 - +0.1 369,251 - -1.0 369,251 - +0.5 369,251 - +1.0 369,253 + +0.6 369,253 + +0.2 369,253 + +2.1 369,253 + -0.2 369,253 + -0.2 369,253 + +1.2 369,254 - -1.3 369,254 - -0.9 369,254 - -1.2 369,254 - +0.6 369,254 - +0.1 369,270 - -0.1 369,289 - +0.7 369,289 - +1.0 369,289 - -0.4 369,289 - -0.0 369,289 - -0.2 369,308 - +0.4 369,308 - -0.7 369,308 - +0.6 369,308 - +1.3 369,345 + -0.1 369,367 + -0.0 369,367 + -0.4 369,367 + +2.6 369,368 - +0.2 369,368 - -0.6 369,368 - +0.7 369,375 + +0.7 369,375 + -0.9 369,376 - -0.2 369,398 - +0.1 369,398 - -1.0 369,398 - -1.2 369,398 - -1.8 369,471 + DZA65_RS01700 0.10 -2.0 369,471 + DZA65_RS01700 0.10 -0.3 369,471 + DZA65_RS01700 0.10 +0.9 369,471 + DZA65_RS01700 0.10 +0.6 369,472 - DZA65_RS01700 0.10 -0.2 369,472 - DZA65_RS01700 0.10 +0.4 369,472 - DZA65_RS01700 0.10 -1.0 369,472 - DZA65_RS01700 0.10 +0.6 369,472 - DZA65_RS01700 0.10 -2.4 369,472 - DZA65_RS01700 0.10 -0.3 369,472 - DZA65_RS01700 0.10 +0.6 369,472 - DZA65_RS01700 0.10 +1.1 369,532 - DZA65_RS01700 0.15 +1.1 369,578 + DZA65_RS01700 0.19 -1.2 369,578 + DZA65_RS01700 0.19 -1.9 369,579 - DZA65_RS01700 0.19 +0.4 369,579 - DZA65_RS01700 0.19 -1.0 369,579 - DZA65_RS01700 0.19 +0.9 369,579 - DZA65_RS01700 0.19 +3.1 369,618 + DZA65_RS01700 0.23 -0.7 369,618 + DZA65_RS01700 0.23 -0.2 369,618 + DZA65_RS01700 0.23 +0.0 369,619 - DZA65_RS01700 0.23 +0.1 369,619 - DZA65_RS01700 0.23 +0.2 369,619 - DZA65_RS01700 0.23 -1.2 369,654 + DZA65_RS01700 0.26 -0.2 369,654 + DZA65_RS01700 0.26 -1.4 369,654 + DZA65_RS01700 0.26 +0.4 369,655 - DZA65_RS01700 0.26 -0.2 369,655 - +0.1 369,848 + DZA65_RS01700 0.43 -0.7 369,848 + DZA65_RS01700 0.43 -0.4 369,848 + DZA65_RS01700 0.43 +0.5 369,849 - DZA65_RS01700 0.43 -0.1 369,894 + DZA65_RS01700 0.47 -2.0 369,894 + DZA65_RS01700 0.47 +1.4 369,894 + DZA65_RS01700 0.47 +0.8 369,894 + DZA65_RS01700 0.47 -1.0 369,894 + DZA65_RS01700 0.47 -1.0 369,894 + DZA65_RS01700 0.47 -0.4 369,894 + DZA65_RS01700 0.47 -0.7 369,895 - DZA65_RS01700 0.47 +0.3 369,895 - DZA65_RS01700 0.47 +0.8 369,895 - DZA65_RS01700 0.47 -1.0 369,942 + DZA65_RS01700 0.51 -0.4 369,942 + DZA65_RS01700 0.51 -0.0 369,942 + DZA65_RS01700 0.51 +0.1 369,942 + DZA65_RS01700 0.51 -0.2 369,943 - DZA65_RS01700 0.51 -0.4 369,943 - DZA65_RS01700 0.51 -0.4 369,995 - DZA65_RS01700 0.55 -0.5 370,024 - DZA65_RS01700 0.58 -0.1 370,024 - DZA65_RS01700 0.58 +0.3 370,024 - DZA65_RS01700 0.58 -1.0 370,024 - DZA65_RS01700 0.58 +0.0 370,057 + DZA65_RS01700 0.61 +0.1 370,057 + DZA65_RS01700 0.61 +1.8 370,057 + DZA65_RS01700 0.61 +1.6 370,058 - DZA65_RS01700 0.61 -0.4 370,058 - DZA65_RS01700 0.61 -0.6 370,058 - DZA65_RS01700 0.61 +1.6 370,062 + DZA65_RS01700 0.61 -1.1 370,062 + DZA65_RS01700 0.61 -1.8 370,062 + DZA65_RS01700 0.61 -0.1 370,062 + DZA65_RS01700 0.61 -0.1 370,063 - DZA65_RS01700 0.61 +1.6 370,063 - DZA65_RS01700 0.61 -0.5 370,063 - DZA65_RS01700 0.61 +0.4 370,140 + DZA65_RS01700 0.68 +1.4 370,140 + DZA65_RS01700 0.68 -1.6 370,141 - DZA65_RS01700 0.68 -0.7
Or see this region's nucleotide sequence