Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01680 and DZA65_RS01685 are separated by 59 nucleotides DZA65_RS01685 and DZA65_RS01695 are separated by 598 nucleotides
DZA65_RS01680: DZA65_RS01680 - penicillin-binding protein activator, at 364,815 to 366,866
_RS01680
DZA65_RS01685: DZA65_RS01685 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 366,926 to 367,795
_RS01685
DZA65_RS01695: DZA65_RS01695 - 4,5-DOPA dioxygenase extradiol, at 368,394 to 369,182
_RS01695
Position (kb) 366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.186 kb on + strand, within DZA65_RS01680 at 366.186 kb on + strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.206 kb on + strand, within DZA65_RS01680 at 366.207 kb on - strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.318 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.389 kb on - strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.448 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.679 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.681 kb on - strand at 366.712 kb on + strand at 366.712 kb on + strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.716 kb on - strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.871 kb on + strand at 366.872 kb on - strand at 366.872 kb on - strand at 366.887 kb on - strand at 366.899 kb on + strand at 366.900 kb on - strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.903 kb on - strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 367.045 kb on + strand, within DZA65_RS01685 at 367.077 kb on + strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.347 kb on - strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.388 kb on - strand, within DZA65_RS01685 at 367.456 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.542 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.794 kb on - strand at 367.794 kb on - strand at 368.252 kb on - strand at 368.321 kb on + strand at 368.335 kb on + strand at 368.335 kb on + strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.341 kb on + strand at 368.341 kb on + strand at 368.342 kb on - strand at 368.342 kb on - strand at 368.346 kb on + strand at 368.346 kb on + strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.363 kb on + strand at 368.363 kb on + strand at 368.372 kb on + strand at 368.381 kb on + strand at 368.393 kb on + strand at 368.393 kb on + strand at 368.466 kb on + strand at 368.466 kb on + strand at 368.467 kb on - strand at 368.467 kb on - strand at 368.483 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.544 kb on - strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.574 kb on - strand, within DZA65_RS01695 at 368.661 kb on - strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.698 kb on - strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 366,186 + DZA65_RS01680 0.67 +1.0 366,186 + DZA65_RS01680 0.67 -0.8 366,187 - DZA65_RS01680 0.67 +2.4 366,187 - DZA65_RS01680 0.67 +0.1 366,206 + DZA65_RS01680 0.68 -0.4 366,207 - DZA65_RS01680 0.68 -0.3 366,263 + DZA65_RS01680 0.71 +0.4 366,263 + DZA65_RS01680 0.71 -1.2 366,264 - DZA65_RS01680 0.71 +0.6 366,264 - DZA65_RS01680 0.71 -1.0 366,318 + DZA65_RS01680 0.73 +0.2 366,388 + DZA65_RS01680 0.77 +0.9 366,388 + DZA65_RS01680 0.77 -1.6 366,388 + DZA65_RS01680 0.77 +0.3 366,389 - DZA65_RS01680 0.77 +0.6 366,445 + DZA65_RS01680 0.79 -1.4 366,445 + DZA65_RS01680 0.79 +1.3 366,445 + DZA65_RS01680 0.79 +0.6 366,448 + DZA65_RS01680 0.80 -1.4 366,660 + DZA65_RS01680 0.90 +1.6 366,660 + DZA65_RS01680 0.90 -2.0 366,660 + DZA65_RS01680 0.90 -0.7 366,660 + DZA65_RS01680 0.90 +0.1 366,660 + DZA65_RS01680 0.90 -0.8 366,660 + DZA65_RS01680 0.90 -1.4 366,661 - +1.6 366,661 - -0.4 366,661 - -1.4 366,661 - -0.6 366,679 + -1.2 366,680 + +0.6 366,680 + +0.9 366,680 + -2.2 366,681 - -2.2 366,712 + -2.2 366,712 + +0.6 366,713 - -1.2 366,713 - +1.6 366,713 - -0.4 366,716 - -0.1 366,744 + +0.1 366,744 + +1.0 366,744 + -1.8 366,745 - -0.7 366,745 - -0.4 366,745 - +0.1 366,866 + -0.5 366,866 + -0.7 366,866 + +0.9 366,866 + -0.1 366,866 + +2.0 366,867 - -0.6 366,867 - +1.0 366,867 - +0.2 366,867 - +0.8 366,867 - -0.3 366,867 - +0.6 366,871 + -1.3 366,872 - -1.4 366,872 - -1.4 366,887 - -0.8 366,899 + +1.7 366,900 - -1.7 366,902 + +0.6 366,902 + -1.0 366,902 + -1.0 366,903 - -0.4 366,968 + +0.6 366,968 + -0.6 366,968 + -1.2 366,968 + -0.1 366,968 + -0.1 366,968 + -0.1 366,968 + +0.4 366,968 + -0.9 366,968 + +0.9 366,968 + +0.3 366,969 - -0.1 366,969 - -0.0 366,969 - +0.3 366,969 - -0.4 366,969 - -1.1 366,969 - -0.2 366,969 - +0.2 366,969 - +0.5 366,969 - +0.0 366,969 - +0.2 366,969 - -0.0 366,969 - +1.4 366,969 - +0.2 366,969 - +1.1 366,969 - -1.0 366,969 - +0.3 367,045 + DZA65_RS01685 0.14 -1.7 367,077 + DZA65_RS01685 0.17 -2.1 367,084 - DZA65_RS01685 0.18 -1.1 367,084 - DZA65_RS01685 0.18 -2.2 367,099 + DZA65_RS01685 0.20 -0.6 367,099 + DZA65_RS01685 0.20 -0.4 367,346 + DZA65_RS01685 0.48 -0.9 367,346 + DZA65_RS01685 0.48 +0.3 367,347 - DZA65_RS01685 0.48 -0.8 367,381 + DZA65_RS01685 0.52 +0.4 367,381 + DZA65_RS01685 0.52 -1.0 367,388 - DZA65_RS01685 0.53 -1.2 367,456 + DZA65_RS01685 0.61 -0.2 367,496 + DZA65_RS01685 0.66 +1.9 367,496 + DZA65_RS01685 0.66 +1.8 367,496 + DZA65_RS01685 0.66 -0.7 367,497 - DZA65_RS01685 0.66 +0.1 367,497 - DZA65_RS01685 0.66 -0.9 367,542 - DZA65_RS01685 0.71 -0.9 367,618 - DZA65_RS01685 0.80 -0.4 367,618 - DZA65_RS01685 0.80 -0.1 367,669 + DZA65_RS01685 0.85 -0.3 367,669 + DZA65_RS01685 0.85 -1.2 367,669 + DZA65_RS01685 0.85 -1.0 367,670 - DZA65_RS01685 0.86 +0.7 367,670 - DZA65_RS01685 0.86 -1.2 367,670 - DZA65_RS01685 0.86 -0.2 367,670 - DZA65_RS01685 0.86 +0.1 367,670 - DZA65_RS01685 0.86 -0.8 367,670 - DZA65_RS01685 0.86 -1.6 367,670 - DZA65_RS01685 0.86 -0.2 367,670 - DZA65_RS01685 0.86 +0.3 367,794 - +0.0 367,794 - -0.8 368,252 - +0.1 368,321 + -1.2 368,335 + -0.4 368,335 + +0.4 368,336 - +1.8 368,336 - -0.1 368,336 - +0.4 368,341 + -0.2 368,341 + +0.2 368,342 - +0.6 368,342 - -0.3 368,346 + +0.2 368,346 + -0.2 368,347 - -1.4 368,347 - -0.9 368,347 - +0.1 368,347 - -1.0 368,347 - -1.4 368,347 - +0.3 368,347 - +0.0 368,347 - -0.4 368,347 - +0.1 368,347 - -0.3 368,363 + -0.6 368,363 + +0.6 368,372 + -0.3 368,381 + +0.3 368,393 + +0.0 368,393 + +1.4 368,466 + -0.6 368,466 + +1.0 368,467 - -0.4 368,467 - +1.6 368,483 + DZA65_RS01695 0.11 +0.7 368,541 + DZA65_RS01695 0.19 -0.5 368,541 + DZA65_RS01695 0.19 +0.8 368,541 + DZA65_RS01695 0.19 -0.6 368,541 + DZA65_RS01695 0.19 +0.3 368,541 + DZA65_RS01695 0.19 -1.8 368,541 + DZA65_RS01695 0.19 +0.2 368,542 - DZA65_RS01695 0.19 -0.4 368,542 - DZA65_RS01695 0.19 -0.9 368,542 - DZA65_RS01695 0.19 +0.2 368,542 - DZA65_RS01695 0.19 +0.6 368,544 - DZA65_RS01695 0.19 +0.7 368,573 + DZA65_RS01695 0.23 +0.5 368,573 + DZA65_RS01695 0.23 +1.1 368,574 - DZA65_RS01695 0.23 -0.2 368,661 - DZA65_RS01695 0.34 -0.5 368,697 + DZA65_RS01695 0.38 +0.2 368,697 + DZA65_RS01695 0.38 +0.6 368,698 - DZA65_RS01695 0.39 +0.0 368,789 + DZA65_RS01695 0.50 -1.1 368,789 + DZA65_RS01695 0.50 -0.2 368,789 + DZA65_RS01695 0.50 -0.0 368,789 + DZA65_RS01695 0.50 -0.3 368,789 + DZA65_RS01695 0.50 -0.2 368,790 - DZA65_RS01695 0.50 +0.6 368,790 - DZA65_RS01695 0.50 -0.1 368,790 - DZA65_RS01695 0.50 +0.3 368,790 - DZA65_RS01695 0.50 +0.6 368,790 - DZA65_RS01695 0.50 -2.9 368,790 - DZA65_RS01695 0.50 +0.6 368,790 - DZA65_RS01695 0.50 +1.1
Or see this region's nucleotide sequence