Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01670 and DZA65_RS01675 are separated by 73 nucleotides DZA65_RS01675 and DZA65_RS01680 overlap by 43 nucleotides DZA65_RS01680 and DZA65_RS01685 are separated by 59 nucleotides
DZA65_RS01670: DZA65_RS01670 - DnaA initiator-associating protein DiaA, at 363,798 to 364,388
_RS01670
DZA65_RS01675: DZA65_RS01675 - YraN family protein, at 364,462 to 364,857
_RS01675
DZA65_RS01680: DZA65_RS01680 - penicillin-binding protein activator, at 364,815 to 366,866
_RS01680
DZA65_RS01685: DZA65_RS01685 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 366,926 to 367,795
_RS01685
Position (kb) 364
365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 363.827 kb on + strand at 363.828 kb on - strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.834 kb on + strand at 363.835 kb on - strand at 363.863 kb on + strand, within DZA65_RS01670 at 363.863 kb on + strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.864 kb on - strand, within DZA65_RS01670 at 363.955 kb on + strand, within DZA65_RS01670 at 364.093 kb on + strand, within DZA65_RS01670 at 364.142 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.151 kb on + strand, within DZA65_RS01670 at 364.152 kb on - strand, within DZA65_RS01670 at 364.152 kb on - strand, within DZA65_RS01670 at 364.172 kb on + strand, within DZA65_RS01670 at 364.172 kb on + strand, within DZA65_RS01670 at 364.202 kb on + strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.203 kb on - strand, within DZA65_RS01670 at 364.373 kb on + strand at 364.373 kb on + strand at 364.374 kb on - strand at 364.374 kb on - strand at 364.374 kb on - strand at 364.407 kb on + strand at 364.408 kb on - strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.439 kb on + strand at 364.440 kb on - strand at 364.440 kb on - strand at 364.451 kb on + strand at 364.452 kb on - strand at 364.452 kb on - strand at 364.464 kb on - strand at 364.620 kb on + strand, within DZA65_RS01675 at 364.620 kb on + strand, within DZA65_RS01675 at 364.651 kb on - strand, within DZA65_RS01675 at 364.698 kb on + strand, within DZA65_RS01675 at 364.699 kb on - strand, within DZA65_RS01675 at 364.699 kb on - strand, within DZA65_RS01675 at 364.723 kb on + strand, within DZA65_RS01675 at 364.866 kb on - strand at 364.896 kb on - strand at 364.896 kb on - strand at 365.005 kb on + strand at 365.005 kb on + strand at 365.006 kb on - strand at 365.006 kb on - strand at 365.079 kb on - strand, within DZA65_RS01680 at 365.132 kb on - strand, within DZA65_RS01680 at 365.132 kb on - strand, within DZA65_RS01680 at 365.150 kb on - strand, within DZA65_RS01680 at 365.231 kb on + strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.232 kb on - strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.233 kb on + strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.234 kb on - strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.267 kb on + strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.268 kb on - strand, within DZA65_RS01680 at 365.404 kb on + strand, within DZA65_RS01680 at 365.405 kb on - strand, within DZA65_RS01680 at 365.405 kb on - strand, within DZA65_RS01680 at 365.591 kb on - strand, within DZA65_RS01680 at 365.744 kb on + strand, within DZA65_RS01680 at 365.770 kb on + strand, within DZA65_RS01680 at 365.771 kb on - strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.880 kb on + strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.881 kb on - strand, within DZA65_RS01680 at 365.882 kb on + strand, within DZA65_RS01680 at 365.883 kb on - strand, within DZA65_RS01680 at 366.186 kb on + strand, within DZA65_RS01680 at 366.186 kb on + strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.206 kb on + strand, within DZA65_RS01680 at 366.207 kb on - strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.318 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.389 kb on - strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.448 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.679 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.681 kb on - strand at 366.712 kb on + strand at 366.712 kb on + strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.716 kb on - strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.871 kb on + strand at 366.872 kb on - strand at 366.872 kb on - strand at 366.887 kb on - strand at 366.899 kb on + strand at 366.900 kb on - strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.903 kb on - strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 367.045 kb on + strand, within DZA65_RS01685 at 367.077 kb on + strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.347 kb on - strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.388 kb on - strand, within DZA65_RS01685 at 367.456 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.542 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.794 kb on - strand at 367.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 363,827 + -1.0 363,828 - -1.8 363,834 + -1.3 363,834 + -0.6 363,834 + +0.4 363,834 + +1.0 363,834 + +1.2 363,834 + +1.8 363,835 - -0.3 363,863 + DZA65_RS01670 0.11 +0.2 363,863 + DZA65_RS01670 0.11 +1.9 363,864 - DZA65_RS01670 0.11 +0.2 363,864 - DZA65_RS01670 0.11 -0.6 363,864 - DZA65_RS01670 0.11 -0.3 363,864 - DZA65_RS01670 0.11 +0.6 363,864 - DZA65_RS01670 0.11 +0.3 363,864 - DZA65_RS01670 0.11 -0.8 363,955 + DZA65_RS01670 0.27 +1.6 364,093 + DZA65_RS01670 0.50 -0.2 364,142 + DZA65_RS01670 0.58 +0.2 364,151 + DZA65_RS01670 0.60 +0.5 364,151 + DZA65_RS01670 0.60 -0.6 364,151 + DZA65_RS01670 0.60 +0.1 364,152 - DZA65_RS01670 0.60 +0.9 364,152 - DZA65_RS01670 0.60 -1.6 364,172 + DZA65_RS01670 0.63 -0.4 364,172 + DZA65_RS01670 0.63 +0.4 364,202 + DZA65_RS01670 0.68 -1.2 364,203 - DZA65_RS01670 0.69 +1.6 364,203 - DZA65_RS01670 0.69 +0.1 364,203 - DZA65_RS01670 0.69 +0.9 364,373 + -1.4 364,373 + -1.0 364,374 - -1.0 364,374 - -2.5 364,374 - -1.0 364,407 + -1.0 364,408 - +1.1 364,439 + -1.2 364,439 + +1.8 364,439 + -0.7 364,439 + +0.1 364,440 - +0.1 364,440 - -0.8 364,451 + -0.4 364,452 - +0.2 364,452 - -1.3 364,464 - +0.3 364,620 + DZA65_RS01675 0.40 -0.8 364,620 + DZA65_RS01675 0.40 -0.4 364,651 - DZA65_RS01675 0.48 -0.9 364,698 + DZA65_RS01675 0.60 -0.6 364,699 - DZA65_RS01675 0.60 -0.2 364,699 - DZA65_RS01675 0.60 -0.2 364,723 + DZA65_RS01675 0.66 +0.1 364,866 - -1.3 364,896 - +0.3 364,896 - +0.1 365,005 + +1.0 365,005 + -0.1 365,006 - -2.0 365,006 - -0.4 365,079 - DZA65_RS01680 0.13 +0.3 365,132 - DZA65_RS01680 0.15 -1.0 365,132 - DZA65_RS01680 0.15 -2.0 365,150 - DZA65_RS01680 0.16 -0.1 365,231 + DZA65_RS01680 0.20 -1.3 365,232 - DZA65_RS01680 0.20 -1.3 365,232 - DZA65_RS01680 0.20 -0.7 365,232 - DZA65_RS01680 0.20 -0.8 365,232 - DZA65_RS01680 0.20 +0.6 365,232 - DZA65_RS01680 0.20 -0.4 365,233 + DZA65_RS01680 0.20 +0.6 365,233 + DZA65_RS01680 0.20 -0.0 365,233 + DZA65_RS01680 0.20 -0.7 365,233 + DZA65_RS01680 0.20 -0.4 365,234 - DZA65_RS01680 0.20 +0.7 365,234 - DZA65_RS01680 0.20 -1.4 365,234 - -1.4 365,234 - DZA65_RS01680 0.20 +0.9 365,234 - DZA65_RS01680 0.20 -0.4 365,234 - DZA65_RS01680 0.20 -1.0 365,267 + DZA65_RS01680 0.22 -1.4 365,267 + DZA65_RS01680 0.22 -0.6 365,267 + DZA65_RS01680 0.22 -0.0 365,267 + DZA65_RS01680 0.22 -0.1 365,268 - DZA65_RS01680 0.22 -1.0 365,268 - DZA65_RS01680 0.22 -0.4 365,268 - DZA65_RS01680 0.22 -2.6 365,268 - DZA65_RS01680 0.22 +0.6 365,404 + DZA65_RS01680 0.29 -0.4 365,405 - DZA65_RS01680 0.29 -0.4 365,405 - DZA65_RS01680 0.29 +0.1 365,591 - DZA65_RS01680 0.38 +0.6 365,744 + DZA65_RS01680 0.45 +0.1 365,770 + DZA65_RS01680 0.47 +1.1 365,771 - DZA65_RS01680 0.47 +0.8 365,880 + DZA65_RS01680 0.52 -2.8 365,880 + DZA65_RS01680 0.52 +0.1 365,880 + DZA65_RS01680 0.52 -0.8 365,880 + DZA65_RS01680 0.52 +0.6 365,880 + DZA65_RS01680 0.52 -0.2 365,880 + DZA65_RS01680 0.52 -0.4 365,880 + DZA65_RS01680 0.52 -0.4 365,881 - DZA65_RS01680 0.52 -1.2 365,881 - DZA65_RS01680 0.52 -0.2 365,881 - DZA65_RS01680 0.52 +0.2 365,881 - DZA65_RS01680 0.52 +1.1 365,881 - DZA65_RS01680 0.52 -0.7 365,882 + DZA65_RS01680 0.52 -0.8 365,883 - DZA65_RS01680 0.52 -3.2 366,186 + DZA65_RS01680 0.67 +1.0 366,186 + DZA65_RS01680 0.67 -0.8 366,187 - DZA65_RS01680 0.67 +2.4 366,187 - DZA65_RS01680 0.67 +0.1 366,206 + DZA65_RS01680 0.68 -0.4 366,207 - DZA65_RS01680 0.68 -0.3 366,263 + DZA65_RS01680 0.71 +0.4 366,263 + DZA65_RS01680 0.71 -1.2 366,264 - DZA65_RS01680 0.71 +0.6 366,264 - DZA65_RS01680 0.71 -1.0 366,318 + DZA65_RS01680 0.73 +0.2 366,388 + DZA65_RS01680 0.77 +0.9 366,388 + DZA65_RS01680 0.77 -1.6 366,388 + DZA65_RS01680 0.77 +0.3 366,389 - DZA65_RS01680 0.77 +0.6 366,445 + DZA65_RS01680 0.79 -1.4 366,445 + DZA65_RS01680 0.79 +1.3 366,445 + DZA65_RS01680 0.79 +0.6 366,448 + DZA65_RS01680 0.80 -1.4 366,660 + DZA65_RS01680 0.90 +1.6 366,660 + DZA65_RS01680 0.90 -2.0 366,660 + DZA65_RS01680 0.90 -0.7 366,660 + DZA65_RS01680 0.90 +0.1 366,660 + DZA65_RS01680 0.90 -0.8 366,660 + DZA65_RS01680 0.90 -1.4 366,661 - +1.6 366,661 - -0.4 366,661 - -1.4 366,661 - -0.6 366,679 + -1.2 366,680 + +0.6 366,680 + +0.9 366,680 + -2.2 366,681 - -2.2 366,712 + -2.2 366,712 + +0.6 366,713 - -1.2 366,713 - +1.6 366,713 - -0.4 366,716 - -0.1 366,744 + +0.1 366,744 + +1.0 366,744 + -1.8 366,745 - -0.7 366,745 - -0.4 366,745 - +0.1 366,866 + -0.5 366,866 + -0.7 366,866 + +0.9 366,866 + -0.1 366,866 + +2.0 366,867 - -0.6 366,867 - +1.0 366,867 - +0.2 366,867 - +0.8 366,867 - -0.3 366,867 - +0.6 366,871 + -1.3 366,872 - -1.4 366,872 - -1.4 366,887 - -0.8 366,899 + +1.7 366,900 - -1.7 366,902 + +0.6 366,902 + -1.0 366,902 + -1.0 366,903 - -0.4 366,968 + +0.6 366,968 + -0.6 366,968 + -1.2 366,968 + -0.1 366,968 + -0.1 366,968 + -0.1 366,968 + +0.4 366,968 + -0.9 366,968 + +0.9 366,968 + +0.3 366,969 - -0.1 366,969 - -0.0 366,969 - +0.3 366,969 - -0.4 366,969 - -1.1 366,969 - -0.2 366,969 - +0.2 366,969 - +0.5 366,969 - +0.0 366,969 - +0.2 366,969 - -0.0 366,969 - +1.4 366,969 - +0.2 366,969 - +1.1 366,969 - -1.0 366,969 - +0.3 367,045 + DZA65_RS01685 0.14 -1.7 367,077 + DZA65_RS01685 0.17 -2.1 367,084 - DZA65_RS01685 0.18 -1.1 367,084 - DZA65_RS01685 0.18 -2.2 367,099 + DZA65_RS01685 0.20 -0.6 367,099 + DZA65_RS01685 0.20 -0.4 367,346 + DZA65_RS01685 0.48 -0.9 367,346 + DZA65_RS01685 0.48 +0.3 367,347 - DZA65_RS01685 0.48 -0.8 367,381 + DZA65_RS01685 0.52 +0.4 367,381 + DZA65_RS01685 0.52 -1.0 367,388 - DZA65_RS01685 0.53 -1.2 367,456 + DZA65_RS01685 0.61 -0.2 367,496 + DZA65_RS01685 0.66 +1.9 367,496 + DZA65_RS01685 0.66 +1.8 367,496 + DZA65_RS01685 0.66 -0.7 367,497 - DZA65_RS01685 0.66 +0.1 367,497 - DZA65_RS01685 0.66 -0.9 367,542 - DZA65_RS01685 0.71 -0.9 367,618 - DZA65_RS01685 0.80 -0.4 367,618 - DZA65_RS01685 0.80 -0.1 367,669 + DZA65_RS01685 0.85 -0.3 367,669 + DZA65_RS01685 0.85 -1.2 367,669 + DZA65_RS01685 0.85 -1.0 367,670 - DZA65_RS01685 0.86 +0.7 367,670 - DZA65_RS01685 0.86 -1.2 367,670 - DZA65_RS01685 0.86 -0.2 367,670 - DZA65_RS01685 0.86 +0.1 367,670 - DZA65_RS01685 0.86 -0.8 367,670 - DZA65_RS01685 0.86 -1.6 367,670 - DZA65_RS01685 0.86 -0.2 367,670 - DZA65_RS01685 0.86 +0.3 367,794 - +0.0 367,794 - -0.8
Or see this region's nucleotide sequence