Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01230 and DZA65_RS01235 overlap by 4 nucleotides DZA65_RS01235 and DZA65_RS01240 are separated by 91 nucleotides DZA65_RS01240 and DZA65_RS01245 are separated by 311 nucleotides
DZA65_RS01230: DZA65_RS01230 - uroporphyrinogen decarboxylase, at 274,754 to 275,827
_RS01230
DZA65_RS01235: DZA65_RS01235 - deoxyribonuclease V, at 275,824 to 276,501
_RS01235
DZA65_RS01240: DZA65_RS01240 - YjaG family protein, at 276,593 to 277,183
_RS01240
DZA65_RS01245: DZA65_RS01245 - DNA-binding protein HU-alpha, at 277,495 to 277,767
_RS01245
Position (kb) 275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 275.808 kb on - strand at 275.833 kb on - strand at 275.892 kb on + strand, within DZA65_RS01235 at 275.892 kb on + strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.893 kb on - strand, within DZA65_RS01235 at 275.986 kb on + strand, within DZA65_RS01235 at 276.011 kb on - strand, within DZA65_RS01235 at 276.025 kb on - strand, within DZA65_RS01235 at 276.033 kb on + strand, within DZA65_RS01235 at 276.034 kb on - strand at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.043 kb on + strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.044 kb on - strand, within DZA65_RS01235 at 276.045 kb on + strand, within DZA65_RS01235 at 276.045 kb on + strand, within DZA65_RS01235 at 276.045 kb on + strand, within DZA65_RS01235 at 276.045 kb on + strand, within DZA65_RS01235 at 276.045 kb on + strand, within DZA65_RS01235 at 276.045 kb on + strand, within DZA65_RS01235 at 276.046 kb on - strand, within DZA65_RS01235 at 276.046 kb on - strand, within DZA65_RS01235 at 276.046 kb on - strand, within DZA65_RS01235 at 276.046 kb on - strand, within DZA65_RS01235 at 276.046 kb on - strand, within DZA65_RS01235 at 276.046 kb on - strand, within DZA65_RS01235 at 276.363 kb on + strand, within DZA65_RS01235 at 276.500 kb on - strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.537 kb on - strand at 276.537 kb on - strand at 276.538 kb on + strand at 276.562 kb on - strand at 276.573 kb on + strand at 276.573 kb on + strand at 276.576 kb on + strand at 276.576 kb on + strand at 276.576 kb on + strand at 276.576 kb on + strand at 276.577 kb on - strand at 276.577 kb on - strand at 276.577 kb on - strand at 276.579 kb on + strand at 276.579 kb on + strand at 276.579 kb on + strand at 276.580 kb on - strand at 276.580 kb on - strand at 276.587 kb on + strand at 276.597 kb on + strand at 276.597 kb on + strand at 276.597 kb on + strand at 276.597 kb on + strand at 276.598 kb on - strand at 276.598 kb on - strand at 276.598 kb on - strand at 276.598 kb on - strand at 276.598 kb on - strand at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.676 kb on + strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.677 kb on - strand, within DZA65_RS01240 at 276.680 kb on + strand, within DZA65_RS01240 at 276.680 kb on + strand, within DZA65_RS01240 at 276.680 kb on + strand, within DZA65_RS01240 at 276.689 kb on + strand, within DZA65_RS01240 at 276.689 kb on + strand, within DZA65_RS01240 at 276.689 kb on + strand, within DZA65_RS01240 at 276.689 kb on + strand, within DZA65_RS01240 at 276.689 kb on + strand, within DZA65_RS01240 at 276.689 kb on + strand, within DZA65_RS01240 at 276.690 kb on - strand at 276.690 kb on - strand, within DZA65_RS01240 at 276.690 kb on - strand, within DZA65_RS01240 at 276.690 kb on - strand, within DZA65_RS01240 at 276.690 kb on - strand, within DZA65_RS01240 at 276.690 kb on - strand, within DZA65_RS01240 at 276.690 kb on - strand, within DZA65_RS01240 at 276.690 kb on - strand, within DZA65_RS01240 at 276.690 kb on - strand, within DZA65_RS01240 at 276.692 kb on + strand, within DZA65_RS01240 at 276.692 kb on + strand, within DZA65_RS01240 at 276.692 kb on + strand, within DZA65_RS01240 at 276.693 kb on - strand, within DZA65_RS01240 at 276.742 kb on + strand, within DZA65_RS01240 at 276.854 kb on + strand, within DZA65_RS01240 at 276.854 kb on + strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.972 kb on + strand, within DZA65_RS01240 at 277.117 kb on - strand, within DZA65_RS01240 at 277.117 kb on - strand, within DZA65_RS01240 at 277.153 kb on + strand at 277.153 kb on + strand at 277.154 kb on - strand at 277.154 kb on - strand at 277.154 kb on - strand at 277.157 kb on - strand at 277.175 kb on + strand at 277.201 kb on + strand at 277.202 kb on - strand at 277.202 kb on - strand at 277.202 kb on - strand at 277.224 kb on + strand at 277.253 kb on + strand at 277.253 kb on + strand at 277.253 kb on + strand at 277.268 kb on + strand at 277.293 kb on + strand at 277.293 kb on + strand at 277.293 kb on + strand at 277.369 kb on + strand at 277.369 kb on + strand at 277.377 kb on + strand at 277.377 kb on + strand at 277.377 kb on + strand at 277.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 275,808 - +0.6 275,833 - +0.6 275,892 + DZA65_RS01235 0.10 -0.2 275,892 + DZA65_RS01235 0.10 -0.1 275,893 - DZA65_RS01235 0.10 -0.7 275,893 - DZA65_RS01235 0.10 +1.3 275,893 - DZA65_RS01235 0.10 +0.8 275,893 - DZA65_RS01235 0.10 -0.1 275,893 - DZA65_RS01235 0.10 +0.7 275,893 - DZA65_RS01235 0.10 -0.5 275,893 - DZA65_RS01235 0.10 +0.1 275,893 - DZA65_RS01235 0.10 -3.1 275,986 + DZA65_RS01235 0.24 -1.4 276,011 - DZA65_RS01235 0.28 -1.3 276,025 - DZA65_RS01235 0.30 +0.2 276,033 + DZA65_RS01235 0.31 -0.8 276,034 - -0.4 276,043 + DZA65_RS01235 0.32 -0.3 276,043 + DZA65_RS01235 0.32 -0.7 276,043 + DZA65_RS01235 0.32 +1.0 276,043 + DZA65_RS01235 0.32 +0.7 276,043 + DZA65_RS01235 0.32 -0.9 276,043 + DZA65_RS01235 0.32 +0.0 276,043 + DZA65_RS01235 0.32 +0.8 276,043 + DZA65_RS01235 0.32 -1.4 276,043 + DZA65_RS01235 0.32 +0.1 276,043 + DZA65_RS01235 0.32 -0.6 276,043 + DZA65_RS01235 0.32 +2.1 276,043 + DZA65_RS01235 0.32 -0.5 276,043 + DZA65_RS01235 0.32 +0.3 276,043 + DZA65_RS01235 0.32 -0.3 276,043 + DZA65_RS01235 0.32 +0.8 276,043 + DZA65_RS01235 0.32 -2.7 276,043 + DZA65_RS01235 0.32 -0.6 276,043 + DZA65_RS01235 0.32 +2.0 276,043 + DZA65_RS01235 0.32 +0.4 276,043 + DZA65_RS01235 0.32 +0.6 276,043 + DZA65_RS01235 0.32 -2.7 276,043 + DZA65_RS01235 0.32 -0.2 276,044 - DZA65_RS01235 0.32 +0.7 276,044 - DZA65_RS01235 0.32 +0.9 276,044 - DZA65_RS01235 0.32 +0.6 276,044 - DZA65_RS01235 0.32 +0.1 276,044 - DZA65_RS01235 0.32 -3.3 276,044 - DZA65_RS01235 0.32 -2.0 276,044 - DZA65_RS01235 0.32 +0.0 276,044 - DZA65_RS01235 0.32 +1.7 276,044 - DZA65_RS01235 0.32 -1.4 276,044 - DZA65_RS01235 0.32 -0.2 276,044 - DZA65_RS01235 0.32 +0.4 276,044 - DZA65_RS01235 0.32 -0.4 276,044 - DZA65_RS01235 0.32 +0.3 276,044 - DZA65_RS01235 0.32 -0.9 276,044 - DZA65_RS01235 0.32 +0.8 276,044 - DZA65_RS01235 0.32 +0.2 276,044 - DZA65_RS01235 0.32 -0.3 276,045 + DZA65_RS01235 0.33 -0.3 276,045 + DZA65_RS01235 0.33 -0.8 276,045 + DZA65_RS01235 0.33 +1.6 276,045 + DZA65_RS01235 0.33 -0.3 276,045 + DZA65_RS01235 0.33 -1.6 276,045 + DZA65_RS01235 0.33 -0.1 276,046 - DZA65_RS01235 0.33 -1.6 276,046 - DZA65_RS01235 0.33 -0.5 276,046 - DZA65_RS01235 0.33 -0.9 276,046 - DZA65_RS01235 0.33 +0.5 276,046 - DZA65_RS01235 0.33 -0.4 276,046 - DZA65_RS01235 0.33 -1.7 276,363 + DZA65_RS01235 0.79 +0.2 276,500 - +0.9 276,536 + +0.5 276,536 + +0.6 276,536 + +1.2 276,537 - -1.0 276,537 - +0.0 276,538 + -1.2 276,562 - -0.1 276,573 + -0.3 276,573 + +1.0 276,576 + -0.4 276,576 + +0.2 276,576 + -1.0 276,576 + +0.8 276,577 - -0.7 276,577 - +0.3 276,577 - -1.7 276,579 + +0.0 276,579 + -0.1 276,579 + -0.6 276,580 - +1.2 276,580 - -0.7 276,587 + -2.5 276,597 + -1.7 276,597 + -1.2 276,597 + +0.4 276,597 + -0.7 276,598 - -0.1 276,598 - -0.2 276,598 - -1.7 276,598 - -0.4 276,598 - -0.5 276,676 + DZA65_RS01240 0.14 +0.9 276,676 + +0.0 276,676 + DZA65_RS01240 0.14 -0.6 276,676 + DZA65_RS01240 0.14 +0.1 276,676 + DZA65_RS01240 0.14 -0.4 276,676 + DZA65_RS01240 0.14 -0.6 276,676 + DZA65_RS01240 0.14 +1.7 276,676 + DZA65_RS01240 0.14 -2.2 276,676 + DZA65_RS01240 0.14 -0.5 276,676 + DZA65_RS01240 0.14 +0.3 276,676 + DZA65_RS01240 0.14 +0.3 276,676 + DZA65_RS01240 0.14 -1.2 276,676 + DZA65_RS01240 0.14 -0.6 276,676 + DZA65_RS01240 0.14 +0.2 276,676 + DZA65_RS01240 0.14 +0.6 276,676 + DZA65_RS01240 0.14 -0.4 276,676 + DZA65_RS01240 0.14 -0.7 276,677 - DZA65_RS01240 0.14 -1.4 276,677 - DZA65_RS01240 0.14 +0.6 276,677 - DZA65_RS01240 0.14 -1.5 276,677 - DZA65_RS01240 0.14 +0.6 276,677 - DZA65_RS01240 0.14 +0.2 276,677 - DZA65_RS01240 0.14 -0.7 276,677 - DZA65_RS01240 0.14 +0.1 276,677 - DZA65_RS01240 0.14 -2.4 276,677 - +0.6 276,677 - DZA65_RS01240 0.14 +0.5 276,677 - DZA65_RS01240 0.14 -0.6 276,677 - DZA65_RS01240 0.14 -1.1 276,677 - DZA65_RS01240 0.14 -0.6 276,677 - DZA65_RS01240 0.14 -1.2 276,677 - DZA65_RS01240 0.14 -1.7 276,677 - DZA65_RS01240 0.14 -1.7 276,680 + DZA65_RS01240 0.15 +0.6 276,680 + DZA65_RS01240 0.15 -0.1 276,680 + DZA65_RS01240 0.15 -0.1 276,689 + DZA65_RS01240 0.16 -0.5 276,689 + DZA65_RS01240 0.16 -0.4 276,689 + DZA65_RS01240 0.16 -0.1 276,689 + DZA65_RS01240 0.16 +0.0 276,689 + DZA65_RS01240 0.16 -0.4 276,689 + DZA65_RS01240 0.16 +1.1 276,690 - +0.2 276,690 - DZA65_RS01240 0.16 +0.6 276,690 - DZA65_RS01240 0.16 +0.2 276,690 - DZA65_RS01240 0.16 +0.3 276,690 - DZA65_RS01240 0.16 -0.6 276,690 - DZA65_RS01240 0.16 -1.6 276,690 - DZA65_RS01240 0.16 -1.6 276,690 - DZA65_RS01240 0.16 +0.0 276,690 - DZA65_RS01240 0.16 -1.5 276,692 + DZA65_RS01240 0.17 +0.6 276,692 + DZA65_RS01240 0.17 -0.4 276,692 + DZA65_RS01240 0.17 +0.0 276,693 - DZA65_RS01240 0.17 -1.1 276,742 + DZA65_RS01240 0.25 -0.9 276,854 + DZA65_RS01240 0.44 -0.3 276,854 + DZA65_RS01240 0.44 -0.7 276,855 - DZA65_RS01240 0.44 -0.4 276,855 - DZA65_RS01240 0.44 +0.2 276,855 - DZA65_RS01240 0.44 +0.6 276,861 + DZA65_RS01240 0.45 +0.3 276,861 + DZA65_RS01240 0.45 +1.0 276,861 + DZA65_RS01240 0.45 -0.8 276,862 - DZA65_RS01240 0.46 +0.0 276,862 - DZA65_RS01240 0.46 +0.3 276,862 - DZA65_RS01240 0.46 +1.1 276,862 - DZA65_RS01240 0.46 -2.1 276,972 + DZA65_RS01240 0.64 +0.0 277,117 - DZA65_RS01240 0.89 -0.7 277,117 - DZA65_RS01240 0.89 -1.0 277,153 + +0.3 277,153 + -1.5 277,154 - +1.2 277,154 - -1.4 277,154 - -1.0 277,157 - -1.4 277,175 + -0.5 277,201 + -0.3 277,202 - -0.4 277,202 - +1.5 277,202 - -0.5 277,224 + -1.3 277,253 + -0.4 277,253 + -0.9 277,253 + -0.1 277,268 + +0.1 277,293 + +1.1 277,293 + +0.6 277,293 + -0.7 277,369 + -1.1 277,369 + -0.1 277,377 + -2.0 277,377 + +0.9 277,377 + +0.8 277,425 + -2.0
Or see this region's nucleotide sequence