Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00720 and DZA65_RS00725 are separated by 6 nucleotides DZA65_RS00725 and DZA65_RS00730 are separated by 178 nucleotides DZA65_RS00730 and DZA65_RS00735 are separated by 112 nucleotides DZA65_RS00735 and DZA65_RS00740 are separated by 48 nucleotides
DZA65_RS00720: DZA65_RS00720 - DUF202 domain-containing protein, at 166,862 to 167,194
_RS00720
DZA65_RS00725: DZA65_RS00725 - DUF202 domain-containing protein, at 167,201 to 167,593
_RS00725
DZA65_RS00730: DZA65_RS00730 - ribonuclease PH, at 167,772 to 168,488
_RS00730
DZA65_RS00735: DZA65_RS00735 - orotate phosphoribosyltransferase, at 168,601 to 169,242
_RS00735
DZA65_RS00740: DZA65_RS00740 - nucleoid occlusion factor SlmA, at 169,291 to 169,887
_RS00740
Position (kb) 167
168
169 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 166.776 kb on + strand at 166.831 kb on + strand at 166.831 kb on + strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.840 kb on + strand at 166.841 kb on - strand at 166.892 kb on + strand at 166.892 kb on + strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.905 kb on - strand, within DZA65_RS00720 at 166.952 kb on - strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.091 kb on - strand, within DZA65_RS00720 at 167.091 kb on - strand, within DZA65_RS00720 at 167.098 kb on + strand, within DZA65_RS00720 at 167.153 kb on + strand, within DZA65_RS00720 at 167.177 kb on - strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.203 kb on - strand at 167.263 kb on + strand, within DZA65_RS00725 at 167.264 kb on - strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.691 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.733 kb on - strand at 167.733 kb on - strand at 167.747 kb on + strand at 167.748 kb on - strand at 167.873 kb on + strand, within DZA65_RS00730 at 167.958 kb on + strand, within DZA65_RS00730 at 167.958 kb on + strand, within DZA65_RS00730 at 167.959 kb on - strand at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.964 kb on - strand, within DZA65_RS00730 at 168.099 kb on + strand at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.107 kb on + strand, within DZA65_RS00730 at 168.108 kb on - strand, within DZA65_RS00730 at 168.108 kb on - strand, within DZA65_RS00730 at 168.195 kb on - strand, within DZA65_RS00730 at 168.195 kb on - strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.486 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.524 kb on + strand at 168.538 kb on + strand at 168.539 kb on - strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.586 kb on - strand at 168.611 kb on - strand at 168.611 kb on - strand at 168.650 kb on + strand at 168.669 kb on + strand, within DZA65_RS00735 at 168.669 kb on + strand, within DZA65_RS00735 at 168.687 kb on + strand, within DZA65_RS00735 at 168.688 kb on - strand, within DZA65_RS00735 at 168.697 kb on + strand, within DZA65_RS00735 at 168.720 kb on + strand, within DZA65_RS00735 at 168.720 kb on + strand, within DZA65_RS00735 at 168.720 kb on + strand, within DZA65_RS00735 at 168.721 kb on - strand, within DZA65_RS00735 at 168.721 kb on - strand, within DZA65_RS00735 at 168.721 kb on - strand, within DZA65_RS00735 at 168.723 kb on + strand, within DZA65_RS00735 at 168.723 kb on + strand, within DZA65_RS00735 at 168.758 kb on - strand, within DZA65_RS00735 at 168.758 kb on - strand, within DZA65_RS00735 at 168.814 kb on + strand, within DZA65_RS00735 at 168.814 kb on + strand, within DZA65_RS00735 at 168.815 kb on - strand, within DZA65_RS00735 at 168.883 kb on + strand, within DZA65_RS00735 at 169.120 kb on + strand, within DZA65_RS00735 at 169.260 kb on - strand at 169.292 kb on + strand at 169.293 kb on - strand at 169.472 kb on - strand, within DZA65_RS00740
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 166,776 + -0.7 166,831 + -0.3 166,831 + +0.1 166,832 - -1.4 166,832 - -0.0 166,832 - -0.8 166,832 - +0.9 166,832 - +0.6 166,840 + +0.5 166,841 - -1.0 166,892 + +0.8 166,892 + +0.1 166,893 - -2.0 166,893 - -2.4 166,893 - +0.2 166,893 - +1.1 166,905 - DZA65_RS00720 0.13 -0.8 166,952 - DZA65_RS00720 0.27 -0.6 167,004 + DZA65_RS00720 0.43 -1.7 167,004 + DZA65_RS00720 0.43 +0.1 167,004 + DZA65_RS00720 0.43 +0.5 167,004 + DZA65_RS00720 0.43 +0.0 167,005 - DZA65_RS00720 0.43 -1.4 167,005 - DZA65_RS00720 0.43 +0.4 167,005 - DZA65_RS00720 0.43 -0.2 167,005 - DZA65_RS00720 0.43 +0.7 167,005 - DZA65_RS00720 0.43 -0.7 167,005 - DZA65_RS00720 0.43 +1.1 167,005 - DZA65_RS00720 0.43 +0.2 167,005 - DZA65_RS00720 0.43 -0.2 167,090 + DZA65_RS00720 0.68 +0.9 167,090 + DZA65_RS00720 0.68 +1.0 167,090 + DZA65_RS00720 0.68 +0.2 167,090 + DZA65_RS00720 0.68 +2.0 167,090 + DZA65_RS00720 0.68 +0.2 167,090 + DZA65_RS00720 0.68 +0.8 167,091 - DZA65_RS00720 0.69 +0.5 167,091 - DZA65_RS00720 0.69 -1.4 167,098 + DZA65_RS00720 0.71 +0.2 167,153 + DZA65_RS00720 0.87 -0.2 167,177 - +0.5 167,202 + -0.1 167,202 + +1.0 167,203 - -0.1 167,263 + DZA65_RS00725 0.16 -1.0 167,264 - DZA65_RS00725 0.16 +0.5 167,278 + DZA65_RS00725 0.20 +1.1 167,278 + DZA65_RS00725 0.20 +0.2 167,278 + DZA65_RS00725 0.20 +2.4 167,280 + DZA65_RS00725 0.20 -1.5 167,280 + DZA65_RS00725 0.20 +0.6 167,280 + DZA65_RS00725 0.20 +0.4 167,280 + DZA65_RS00725 0.20 +0.5 167,280 + DZA65_RS00725 0.20 -0.1 167,281 - DZA65_RS00725 0.20 +0.2 167,281 - DZA65_RS00725 0.20 -1.1 167,281 - DZA65_RS00725 0.20 -1.0 167,281 - DZA65_RS00725 0.20 +1.2 167,281 - DZA65_RS00725 0.20 -0.7 167,281 - DZA65_RS00725 0.20 -0.2 167,281 - DZA65_RS00725 0.20 -0.3 167,281 - DZA65_RS00725 0.20 +0.5 167,281 - DZA65_RS00725 0.20 +0.6 167,626 + -0.4 167,626 + -0.7 167,626 + -0.4 167,626 + -1.4 167,626 + +0.6 167,626 + +0.8 167,627 - -0.7 167,627 - -0.4 167,627 - +1.1 167,627 - -0.4 167,627 - +0.6 167,627 - +1.4 167,627 - -0.2 167,627 - -0.9 167,627 - +0.5 167,627 - +0.8 167,691 + -2.0 167,730 + -0.2 167,730 + -0.1 167,730 + -1.2 167,730 + -0.2 167,730 + +1.1 167,730 + +0.0 167,730 + -0.6 167,730 + -1.3 167,731 - -1.0 167,731 - -3.9 167,731 - -0.7 167,731 - +1.3 167,731 - +0.5 167,731 - +0.9 167,731 - +0.0 167,731 - -0.6 167,732 + -0.4 167,732 + -0.1 167,732 + +0.7 167,732 + -1.4 167,732 + -0.5 167,732 + +0.1 167,732 + -0.4 167,732 + -1.1 167,732 + -1.8 167,733 - +1.4 167,733 - -0.4 167,747 + +0.2 167,748 - -1.3 167,873 + DZA65_RS00730 0.14 -1.1 167,958 + DZA65_RS00730 0.26 +0.1 167,958 + DZA65_RS00730 0.26 -1.0 167,959 - -0.7 167,963 + DZA65_RS00730 0.27 +0.3 167,963 + DZA65_RS00730 0.27 -0.5 167,963 + DZA65_RS00730 0.27 -0.7 167,963 + DZA65_RS00730 0.27 +1.6 167,964 - DZA65_RS00730 0.27 -2.2 168,099 + +0.6 168,099 + DZA65_RS00730 0.46 -0.7 168,099 + DZA65_RS00730 0.46 -1.0 168,099 + DZA65_RS00730 0.46 +1.1 168,099 + DZA65_RS00730 0.46 +0.6 168,099 + DZA65_RS00730 0.46 -0.4 168,099 + DZA65_RS00730 0.46 -0.4 168,099 + DZA65_RS00730 0.46 -0.1 168,099 + DZA65_RS00730 0.46 -0.3 168,099 + DZA65_RS00730 0.46 -0.8 168,099 + DZA65_RS00730 0.46 -0.0 168,100 - DZA65_RS00730 0.46 -0.1 168,100 - DZA65_RS00730 0.46 -0.4 168,100 - DZA65_RS00730 0.46 -0.1 168,100 - DZA65_RS00730 0.46 +0.6 168,100 - DZA65_RS00730 0.46 +1.2 168,100 - DZA65_RS00730 0.46 -1.2 168,107 + DZA65_RS00730 0.47 -0.2 168,108 - DZA65_RS00730 0.47 -0.5 168,108 - DZA65_RS00730 0.47 -0.3 168,195 - DZA65_RS00730 0.59 +0.0 168,195 - DZA65_RS00730 0.59 -0.1 168,300 + DZA65_RS00730 0.74 +1.2 168,300 + DZA65_RS00730 0.74 +0.6 168,300 + DZA65_RS00730 0.74 -1.0 168,300 + DZA65_RS00730 0.74 +0.1 168,300 + DZA65_RS00730 0.74 -0.1 168,300 + DZA65_RS00730 0.74 -1.0 168,301 - DZA65_RS00730 0.74 +0.1 168,301 - DZA65_RS00730 0.74 -0.2 168,486 + +0.8 168,522 + +0.6 168,522 + +0.8 168,522 + -0.5 168,522 + -1.4 168,523 - +0.4 168,523 - -0.2 168,523 - -0.3 168,524 + +0.5 168,538 + -0.6 168,539 - -0.2 168,543 + +0.2 168,543 + -1.1 168,543 + -0.6 168,543 + -0.1 168,543 + -0.7 168,543 + +0.2 168,543 + +0.1 168,543 + -1.0 168,543 + -0.7 168,543 + +0.4 168,543 + -0.5 168,543 + -0.2 168,543 + -0.7 168,543 + +1.1 168,543 + -0.6 168,543 + +2.5 168,543 + -0.7 168,543 + -0.6 168,543 + -0.6 168,543 + -0.9 168,543 + +0.3 168,543 + -0.1 168,543 + -0.0 168,543 + +1.5 168,543 + -0.0 168,544 - +1.4 168,544 - +0.6 168,544 - +0.6 168,544 - -2.2 168,544 - +0.8 168,544 - -0.4 168,544 - -0.7 168,544 - -0.1 168,544 - -0.4 168,544 - -0.8 168,544 - -0.7 168,544 - -1.1 168,544 - -0.4 168,544 - -1.0 168,544 - +0.3 168,544 - -0.1 168,544 - -0.3 168,544 - -0.1 168,544 - +0.5 168,544 - +0.4 168,544 - -1.0 168,544 - +0.4 168,544 - +0.1 168,544 - -0.1 168,544 - -1.1 168,544 - +1.0 168,544 - +0.7 168,544 - -0.4 168,544 - -0.1 168,544 - +0.6 168,586 - +1.2 168,611 - -0.1 168,611 - +1.2 168,650 + +0.6 168,669 + DZA65_RS00735 0.11 -0.1 168,669 + DZA65_RS00735 0.11 -2.1 168,687 + DZA65_RS00735 0.13 +0.0 168,688 - DZA65_RS00735 0.14 +0.2 168,697 + DZA65_RS00735 0.15 +0.9 168,720 + DZA65_RS00735 0.19 +1.1 168,720 + DZA65_RS00735 0.19 -1.0 168,720 + DZA65_RS00735 0.19 -1.6 168,721 - DZA65_RS00735 0.19 +0.4 168,721 - DZA65_RS00735 0.19 +0.2 168,721 - DZA65_RS00735 0.19 -0.1 168,723 + DZA65_RS00735 0.19 +0.3 168,723 + DZA65_RS00735 0.19 +0.2 168,758 - DZA65_RS00735 0.24 -0.4 168,758 - DZA65_RS00735 0.24 -0.0 168,814 + DZA65_RS00735 0.33 -0.2 168,814 + DZA65_RS00735 0.33 +0.3 168,815 - DZA65_RS00735 0.33 -1.0 168,883 + DZA65_RS00735 0.44 +1.6 169,120 + DZA65_RS00735 0.81 +0.6 169,260 - +0.4 169,292 + +0.9 169,293 - +0.9 169,472 - DZA65_RS00740 0.30 +0.6
Or see this region's nucleotide sequence