Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00580

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00575 and DZA65_RS00580 are separated by 129 nucleotidesDZA65_RS00580 and DZA65_RS00585 are separated by 128 nucleotides DZA65_RS00575: DZA65_RS00575 - YicC family protein, at 133,395 to 134,258 _RS00575 DZA65_RS00580: DZA65_RS00580 - LysR family transcriptional regulator, at 134,388 to 135,296 _RS00580 DZA65_RS00585: DZA65_RS00585 - membrane dipeptidase, at 135,425 to 136,507 _RS00585 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.396 kb on + strandat 133.403 kb on + strandat 133.573 kb on + strand, within DZA65_RS00575at 133.835 kb on + strand, within DZA65_RS00575at 133.835 kb on + strand, within DZA65_RS00575at 133.835 kb on + strand, within DZA65_RS00575at 133.835 kb on + strand, within DZA65_RS00575at 133.836 kb on - strandat 133.836 kb on - strand, within DZA65_RS00575at 133.836 kb on - strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strandat 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.869 kb on + strand, within DZA65_RS00575at 133.870 kb on - strand, within DZA65_RS00575at 133.870 kb on - strand, within DZA65_RS00575at 133.870 kb on - strand, within DZA65_RS00575at 133.870 kb on - strand, within DZA65_RS00575at 133.870 kb on - strand, within DZA65_RS00575at 133.870 kb on - strand, within DZA65_RS00575at 133.870 kb on - strand, within DZA65_RS00575at 133.873 kb on + strand, within DZA65_RS00575at 134.124 kb on + strand, within DZA65_RS00575at 134.124 kb on + strand, within DZA65_RS00575at 134.145 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.155 kb on + strand, within DZA65_RS00575at 134.156 kb on - strand, within DZA65_RS00575at 134.156 kb on - strand, within DZA65_RS00575at 134.156 kb on - strand, within DZA65_RS00575at 134.156 kb on - strand, within DZA65_RS00575at 134.156 kb on - strand, within DZA65_RS00575at 134.156 kb on - strand, within DZA65_RS00575at 134.168 kb on - strand, within DZA65_RS00575at 134.168 kb on - strand, within DZA65_RS00575at 134.236 kb on + strandat 134.237 kb on - strandat 134.250 kb on - strandat 134.250 kb on - strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.266 kb on + strandat 134.267 kb on - strandat 134.267 kb on - strandat 134.267 kb on - strandat 134.273 kb on + strandat 134.288 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.292 kb on + strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.293 kb on - strandat 134.294 kb on + strandat 134.295 kb on - strandat 134.499 kb on + strand, within DZA65_RS00580at 134.499 kb on + strand, within DZA65_RS00580at 134.500 kb on - strand, within DZA65_RS00580at 134.500 kb on - strand, within DZA65_RS00580at 134.500 kb on - strand, within DZA65_RS00580at 134.633 kb on - strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.644 kb on + strand, within DZA65_RS00580at 134.645 kb on - strand, within DZA65_RS00580at 134.645 kb on - strand, within DZA65_RS00580at 134.645 kb on - strand, within DZA65_RS00580at 134.739 kb on - strand, within DZA65_RS00580at 134.739 kb on - strand, within DZA65_RS00580at 134.804 kb on + strand, within DZA65_RS00580at 134.804 kb on + strand, within DZA65_RS00580at 134.804 kb on + strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.805 kb on - strand, within DZA65_RS00580at 134.859 kb on + strand, within DZA65_RS00580at 134.860 kb on - strand, within DZA65_RS00580at 134.891 kb on + strand, within DZA65_RS00580at 134.892 kb on - strand, within DZA65_RS00580at 135.065 kb on + strand, within DZA65_RS00580at 135.065 kb on + strand, within DZA65_RS00580at 135.065 kb on + strand, within DZA65_RS00580at 135.066 kb on - strand, within DZA65_RS00580at 135.066 kb on - strand, within DZA65_RS00580at 135.066 kb on - strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.072 kb on + strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.073 kb on - strand, within DZA65_RS00580at 135.082 kb on + strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.083 kb on - strand, within DZA65_RS00580at 135.225 kb on + strandat 135.357 kb on + strandat 135.357 kb on + strandat 135.357 kb on + strandat 135.379 kb on + strandat 135.398 kb on + strandat 135.398 kb on + strandat 135.482 kb on + strandat 135.529 kb on + strandat 135.627 kb on + strand, within DZA65_RS00585at 135.627 kb on + strand, within DZA65_RS00585at 135.627 kb on + strand, within DZA65_RS00585at 135.627 kb on + strand, within DZA65_RS00585at 135.628 kb on - strand, within DZA65_RS00585at 135.988 kb on + strand, within DZA65_RS00585at 135.989 kb on - strand, within DZA65_RS00585at 136.042 kb on + strand, within DZA65_RS00585at 136.043 kb on - strand, within DZA65_RS00585at 136.151 kb on + strand, within DZA65_RS00585

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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133,396 + -3.1
133,403 + -0.4
133,573 + DZA65_RS00575 0.21 -1.7
133,835 + DZA65_RS00575 0.51 +0.2
133,835 + DZA65_RS00575 0.51 -0.4
133,835 + DZA65_RS00575 0.51 -0.0
133,835 + DZA65_RS00575 0.51 -0.2
133,836 - +0.1
133,836 - DZA65_RS00575 0.51 +0.3
133,836 - DZA65_RS00575 0.51 +0.6
133,869 + DZA65_RS00575 0.55 -0.2
133,869 + DZA65_RS00575 0.55 -0.3
133,869 + DZA65_RS00575 0.55 -0.2
133,869 + DZA65_RS00575 0.55 -0.6
133,869 + DZA65_RS00575 0.55 +0.3
133,869 + DZA65_RS00575 0.55 -0.0
133,869 + DZA65_RS00575 0.55 -0.4
133,869 + +0.6
133,869 + DZA65_RS00575 0.55 -1.2
133,869 + DZA65_RS00575 0.55 -0.3
133,869 + DZA65_RS00575 0.55 +0.4
133,870 - DZA65_RS00575 0.55 -0.6
133,870 - DZA65_RS00575 0.55 +1.5
133,870 - DZA65_RS00575 0.55 +1.5
133,870 - DZA65_RS00575 0.55 +0.9
133,870 - DZA65_RS00575 0.55 -0.4
133,870 - DZA65_RS00575 0.55 +0.0
133,870 - DZA65_RS00575 0.55 +0.6
133,873 + DZA65_RS00575 0.55 -0.5
134,124 + DZA65_RS00575 0.84 +0.8
134,124 + DZA65_RS00575 0.84 -0.0
134,145 + DZA65_RS00575 0.87 -3.5
134,155 + DZA65_RS00575 0.88 +1.4
134,155 + DZA65_RS00575 0.88 -0.6
134,155 + DZA65_RS00575 0.88 -0.7
134,155 + DZA65_RS00575 0.88 +0.0
134,155 + DZA65_RS00575 0.88 +0.9
134,155 + DZA65_RS00575 0.88 +0.2
134,155 + DZA65_RS00575 0.88 -0.3
134,155 + DZA65_RS00575 0.88 -0.3
134,155 + DZA65_RS00575 0.88 +1.4
134,155 + DZA65_RS00575 0.88 +0.6
134,155 + DZA65_RS00575 0.88 -0.4
134,156 - DZA65_RS00575 0.88 -0.0
134,156 - DZA65_RS00575 0.88 +0.2
134,156 - DZA65_RS00575 0.88 -2.0
134,156 - DZA65_RS00575 0.88 -0.4
134,156 - DZA65_RS00575 0.88 -0.9
134,156 - DZA65_RS00575 0.88 -1.7
134,168 - DZA65_RS00575 0.89 +1.0
134,168 - DZA65_RS00575 0.89 -0.6
134,236 + +0.1
134,237 - -2.0
134,250 - +0.6
134,250 - +0.1
134,266 + +0.6
134,266 + +0.2
134,266 + +0.6
134,266 + -1.5
134,266 + -2.2
134,266 + +0.6
134,267 - -0.5
134,267 - +1.9
134,267 - +0.6
134,273 + -1.2
134,288 + +2.4
134,292 + -0.8
134,292 + +0.0
134,292 + +0.0
134,292 + -0.5
134,292 + -1.7
134,292 + +0.1
134,292 + -0.5
134,292 + -1.0
134,292 + -0.2
134,292 + -1.7
134,292 + -0.4
134,292 + -1.2
134,293 - -1.4
134,293 - -2.0
134,293 - -0.4
134,293 - -0.6
134,293 - -1.0
134,293 - +0.5
134,293 - -0.1
134,293 - +0.1
134,293 - -0.1
134,293 - +1.4
134,293 - -0.1
134,293 - -0.7
134,293 - +0.0
134,293 - +0.3
134,293 - +0.0
134,293 - -0.7
134,293 - +0.6
134,293 - -0.6
134,294 + +0.6
134,295 - -1.5
134,499 + DZA65_RS00580 0.12 +0.2
134,499 + DZA65_RS00580 0.12 -0.9
134,500 - DZA65_RS00580 0.12 -1.7
134,500 - DZA65_RS00580 0.12 -2.4
134,500 - DZA65_RS00580 0.12 -0.7
134,633 - DZA65_RS00580 0.27 +0.3
134,644 + DZA65_RS00580 0.28 -1.0
134,644 + DZA65_RS00580 0.28 +0.3
134,644 + DZA65_RS00580 0.28 +0.2
134,644 + DZA65_RS00580 0.28 -0.4
134,645 - DZA65_RS00580 0.28 -0.0
134,645 - DZA65_RS00580 0.28 -0.0
134,645 - DZA65_RS00580 0.28 +1.0
134,739 - DZA65_RS00580 0.39 -0.2
134,739 - DZA65_RS00580 0.39 -0.3
134,804 + DZA65_RS00580 0.46 +0.8
134,804 + DZA65_RS00580 0.46 -1.7
134,804 + DZA65_RS00580 0.46 -0.4
134,805 - DZA65_RS00580 0.46 -1.1
134,805 - DZA65_RS00580 0.46 -1.4
134,805 - DZA65_RS00580 0.46 +1.1
134,805 - DZA65_RS00580 0.46 -0.6
134,805 - DZA65_RS00580 0.46 -0.2
134,859 + DZA65_RS00580 0.52 +0.7
134,860 - DZA65_RS00580 0.52 -2.2
134,891 + DZA65_RS00580 0.55 -0.0
134,892 - DZA65_RS00580 0.55 +1.0
135,065 + DZA65_RS00580 0.74 +0.4
135,065 + DZA65_RS00580 0.74 -0.2
135,065 + DZA65_RS00580 0.74 -2.2
135,066 - DZA65_RS00580 0.75 -0.4
135,066 - DZA65_RS00580 0.75 +0.2
135,066 - DZA65_RS00580 0.75 -0.7
135,072 + DZA65_RS00580 0.75 -0.4
135,072 + DZA65_RS00580 0.75 -1.0
135,072 + DZA65_RS00580 0.75 -0.6
135,072 + DZA65_RS00580 0.75 +0.3
135,072 + DZA65_RS00580 0.75 -0.8
135,073 - DZA65_RS00580 0.75 -0.9
135,073 - DZA65_RS00580 0.75 +0.8
135,073 - DZA65_RS00580 0.75 -1.4
135,073 - DZA65_RS00580 0.75 +0.4
135,073 - DZA65_RS00580 0.75 -1.0
135,073 - DZA65_RS00580 0.75 +0.2
135,082 + DZA65_RS00580 0.76 +0.8
135,083 - DZA65_RS00580 0.76 -0.4
135,083 - DZA65_RS00580 0.76 +0.7
135,083 - DZA65_RS00580 0.76 -1.3
135,083 - DZA65_RS00580 0.76 -0.5
135,225 + -0.5
135,357 + +0.0
135,357 + -0.2
135,357 + -0.4
135,379 + +0.6
135,398 + +0.3
135,398 + +1.3
135,482 + +1.5
135,529 + -0.0
135,627 + DZA65_RS00585 0.19 +0.8
135,627 + DZA65_RS00585 0.19 +1.8
135,627 + DZA65_RS00585 0.19 +0.0
135,627 + DZA65_RS00585 0.19 +0.1
135,628 - DZA65_RS00585 0.19 -1.1
135,988 + DZA65_RS00585 0.52 -0.4
135,989 - DZA65_RS00585 0.52 +0.2
136,042 + DZA65_RS00585 0.57 -1.1
136,043 - DZA65_RS00585 0.57 +2.0
136,151 + DZA65_RS00585 0.67 -0.6

Or see this region's nucleotide sequence