Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00295 and DZA65_RS00300 are separated by 78 nucleotides DZA65_RS00300 and DZA65_RS00310 are separated by 303 nucleotides
DZA65_RS00295: DZA65_RS00295 - aldehyde dehydrogenase, at 71,531 to 73,066
_RS00295
DZA65_RS00300: DZA65_RS00300 - xylulokinase, at 73,145 to 74,605
_RS00300
DZA65_RS00310: DZA65_RS00310 - xylose isomerase, at 74,909 to 76,228
_RS00310
Position (kb) 73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.222 kb on - strand, within DZA65_RS00295 at 72.297 kb on - strand, within DZA65_RS00295 at 72.352 kb on + strand, within DZA65_RS00295 at 72.352 kb on + strand, within DZA65_RS00295 at 72.353 kb on - strand, within DZA65_RS00295 at 72.353 kb on - strand, within DZA65_RS00295 at 72.353 kb on - strand, within DZA65_RS00295 at 72.448 kb on + strand, within DZA65_RS00295 at 72.448 kb on + strand, within DZA65_RS00295 at 72.448 kb on + strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.449 kb on - strand, within DZA65_RS00295 at 72.486 kb on - strand, within DZA65_RS00295 at 72.486 kb on - strand, within DZA65_RS00295 at 72.486 kb on - strand, within DZA65_RS00295 at 72.576 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.608 kb on + strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.609 kb on - strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.692 kb on + strand, within DZA65_RS00295 at 72.693 kb on - strand, within DZA65_RS00295 at 72.693 kb on - strand, within DZA65_RS00295 at 72.695 kb on + strand, within DZA65_RS00295 at 72.695 kb on + strand, within DZA65_RS00295 at 72.695 kb on + strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand, within DZA65_RS00295 at 72.696 kb on - strand at 72.920 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.958 kb on + strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.959 kb on - strand at 72.971 kb on - strand at 73.007 kb on + strand at 73.008 kb on - strand at 73.037 kb on + strand at 73.038 kb on - strand at 73.038 kb on - strand at 73.064 kb on + strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.065 kb on - strand at 73.123 kb on + strand at 73.173 kb on + strand at 73.173 kb on + strand at 73.174 kb on - strand at 73.174 kb on - strand at 73.174 kb on - strand at 73.266 kb on - strand at 73.353 kb on + strand, within DZA65_RS00300 at 73.354 kb on - strand, within DZA65_RS00300 at 73.376 kb on - strand at 73.588 kb on + strand, within DZA65_RS00300 at 73.588 kb on + strand, within DZA65_RS00300 at 73.588 kb on + strand, within DZA65_RS00300 at 73.588 kb on + strand at 73.589 kb on - strand, within DZA65_RS00300 at 73.589 kb on - strand, within DZA65_RS00300 at 73.589 kb on - strand, within DZA65_RS00300 at 73.605 kb on + strand, within DZA65_RS00300 at 73.606 kb on - strand at 73.830 kb on + strand, within DZA65_RS00300 at 73.831 kb on - strand, within DZA65_RS00300 at 73.875 kb on + strand, within DZA65_RS00300 at 73.875 kb on + strand, within DZA65_RS00300 at 74.024 kb on + strand, within DZA65_RS00300 at 74.024 kb on + strand, within DZA65_RS00300 at 74.024 kb on + strand, within DZA65_RS00300 at 74.025 kb on - strand, within DZA65_RS00300 at 74.142 kb on + strand, within DZA65_RS00300 at 74.143 kb on - strand, within DZA65_RS00300 at 74.201 kb on + strand, within DZA65_RS00300 at 74.202 kb on - strand, within DZA65_RS00300 at 74.225 kb on - strand, within DZA65_RS00300 at 74.270 kb on + strand, within DZA65_RS00300 at 74.270 kb on + strand, within DZA65_RS00300 at 74.556 kb on - strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.558 kb on + strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.559 kb on - strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.601 kb on + strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.602 kb on - strand at 74.605 kb on + strand at 74.669 kb on + strand at 74.703 kb on + strand at 74.715 kb on + strand at 74.716 kb on - strand at 74.796 kb on + strand at 74.796 kb on + strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.797 kb on - strand at 74.922 kb on + strand at 74.922 kb on + strand at 74.922 kb on + strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.033 kb on - strand at 75.033 kb on - strand at 75.180 kb on + strand, within DZA65_RS00310 at 75.180 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.261 kb on + strand, within DZA65_RS00310 at 75.262 kb on - strand, within DZA65_RS00310 at 75.262 kb on - strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.397 kb on + strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.398 kb on - strand, within DZA65_RS00310 at 75.495 kb on + strand, within DZA65_RS00310 at 75.495 kb on + strand, within DZA65_RS00310 at 75.496 kb on - strand, within DZA65_RS00310 at 75.496 kb on - strand, within DZA65_RS00310 at 75.502 kb on - strand, within DZA65_RS00310 at 75.554 kb on - strand, within DZA65_RS00310
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 72,165 + DZA65_RS00295 0.41 +0.8 72,165 + DZA65_RS00295 0.41 -0.1 72,165 + DZA65_RS00295 0.41 -1.7 72,165 + DZA65_RS00295 0.41 -1.1 72,165 + DZA65_RS00295 0.41 +0.6 72,165 + DZA65_RS00295 0.41 -0.4 72,165 + DZA65_RS00295 0.41 -1.3 72,165 + DZA65_RS00295 0.41 +1.0 72,166 - DZA65_RS00295 0.41 +1.2 72,166 - DZA65_RS00295 0.41 -0.4 72,166 - -1.4 72,166 - DZA65_RS00295 0.41 +0.1 72,166 - DZA65_RS00295 0.41 -0.2 72,166 - DZA65_RS00295 0.41 +1.1 72,166 - DZA65_RS00295 0.41 -1.1 72,166 - DZA65_RS00295 0.41 +0.3 72,166 - DZA65_RS00295 0.41 -1.8 72,166 - DZA65_RS00295 0.41 +1.8 72,166 - DZA65_RS00295 0.41 +0.3 72,166 - DZA65_RS00295 0.41 -0.1 72,222 - DZA65_RS00295 0.45 -1.4 72,297 - DZA65_RS00295 0.50 -0.1 72,352 + DZA65_RS00295 0.53 -1.3 72,352 + DZA65_RS00295 0.53 -0.1 72,353 - DZA65_RS00295 0.54 -0.4 72,353 - DZA65_RS00295 0.54 -2.5 72,353 - DZA65_RS00295 0.54 -0.0 72,448 + DZA65_RS00295 0.60 -0.7 72,448 + DZA65_RS00295 0.60 -1.3 72,448 + DZA65_RS00295 0.60 -0.7 72,449 - DZA65_RS00295 0.60 -0.2 72,449 - DZA65_RS00295 0.60 +0.5 72,449 - DZA65_RS00295 0.60 -0.1 72,449 - DZA65_RS00295 0.60 -0.1 72,449 - DZA65_RS00295 0.60 +1.1 72,449 - DZA65_RS00295 0.60 +0.8 72,486 - DZA65_RS00295 0.62 +1.5 72,486 - DZA65_RS00295 0.62 +0.2 72,486 - DZA65_RS00295 0.62 -1.0 72,576 + DZA65_RS00295 0.68 -0.4 72,608 + DZA65_RS00295 0.70 -0.4 72,608 + DZA65_RS00295 0.70 +0.6 72,608 + DZA65_RS00295 0.70 -2.1 72,608 + DZA65_RS00295 0.70 -0.4 72,608 + DZA65_RS00295 0.70 -0.8 72,608 + DZA65_RS00295 0.70 -0.3 72,608 + DZA65_RS00295 0.70 +0.5 72,608 + DZA65_RS00295 0.70 -0.0 72,608 + DZA65_RS00295 0.70 +0.6 72,609 - DZA65_RS00295 0.70 -1.0 72,609 - DZA65_RS00295 0.70 +0.3 72,609 - DZA65_RS00295 0.70 -1.5 72,609 - DZA65_RS00295 0.70 -2.3 72,609 - DZA65_RS00295 0.70 -0.2 72,609 - DZA65_RS00295 0.70 +0.6 72,609 - DZA65_RS00295 0.70 -0.5 72,609 - DZA65_RS00295 0.70 +0.0 72,609 - DZA65_RS00295 0.70 -1.0 72,609 - DZA65_RS00295 0.70 +0.5 72,692 + DZA65_RS00295 0.76 +0.0 72,692 + DZA65_RS00295 0.76 +0.1 72,692 + DZA65_RS00295 0.76 -0.8 72,692 + DZA65_RS00295 0.76 +2.0 72,692 + DZA65_RS00295 0.76 -0.8 72,692 + DZA65_RS00295 0.76 -2.5 72,692 + DZA65_RS00295 0.76 +1.3 72,692 + DZA65_RS00295 0.76 +1.1 72,693 - DZA65_RS00295 0.76 +0.8 72,693 - DZA65_RS00295 0.76 -1.1 72,695 + DZA65_RS00295 0.76 -0.4 72,695 + DZA65_RS00295 0.76 +0.5 72,695 + DZA65_RS00295 0.76 +0.2 72,696 - DZA65_RS00295 0.76 -0.3 72,696 - DZA65_RS00295 0.76 +0.3 72,696 - DZA65_RS00295 0.76 +0.3 72,696 - DZA65_RS00295 0.76 +0.5 72,696 - DZA65_RS00295 0.76 +0.2 72,696 - DZA65_RS00295 0.76 +0.9 72,696 - DZA65_RS00295 0.76 +2.4 72,696 - +0.6 72,920 + +0.6 72,958 + -0.4 72,958 + +0.9 72,958 + +1.4 72,959 - +0.4 72,959 - -1.8 72,959 - -0.8 72,959 - -0.1 72,959 - -0.7 72,959 - +1.4 72,971 - +0.9 73,007 + -1.5 73,008 - +0.4 73,037 + +0.1 73,038 - -0.5 73,038 - +0.4 73,064 + -0.6 73,065 - -0.1 73,065 - -0.1 73,065 - -1.4 73,065 - +0.3 73,065 - -0.3 73,123 + +0.3 73,173 + -0.5 73,173 + -0.1 73,174 - -0.5 73,174 - -1.4 73,174 - -0.6 73,266 - -1.6 73,353 + DZA65_RS00300 0.14 -0.5 73,354 - DZA65_RS00300 0.14 -0.3 73,376 - -1.0 73,588 + DZA65_RS00300 0.30 +0.4 73,588 + DZA65_RS00300 0.30 +0.2 73,588 + DZA65_RS00300 0.30 +1.4 73,588 + -0.4 73,589 - DZA65_RS00300 0.30 +1.4 73,589 - DZA65_RS00300 0.30 +0.8 73,589 - DZA65_RS00300 0.30 +0.5 73,605 + DZA65_RS00300 0.31 -0.1 73,606 - +2.2 73,830 + DZA65_RS00300 0.47 +1.1 73,831 - DZA65_RS00300 0.47 +0.8 73,875 + DZA65_RS00300 0.50 +0.6 73,875 + DZA65_RS00300 0.50 -1.3 74,024 + DZA65_RS00300 0.60 +0.5 74,024 + DZA65_RS00300 0.60 +0.9 74,024 + DZA65_RS00300 0.60 +1.0 74,025 - DZA65_RS00300 0.60 +0.3 74,142 + DZA65_RS00300 0.68 -1.4 74,143 - DZA65_RS00300 0.68 -1.0 74,201 + DZA65_RS00300 0.72 -0.6 74,202 - DZA65_RS00300 0.72 +0.5 74,225 - DZA65_RS00300 0.74 -1.2 74,270 + DZA65_RS00300 0.77 +0.8 74,270 + DZA65_RS00300 0.77 +0.9 74,556 - +0.8 74,558 + +0.6 74,558 + +0.0 74,558 + +1.7 74,558 + +0.7 74,558 + +0.0 74,558 + +1.1 74,558 + -0.7 74,558 + -1.1 74,558 + -0.2 74,559 - +0.4 74,559 - +1.0 74,559 - -0.0 74,559 - -3.4 74,559 - -0.5 74,559 - -0.8 74,559 - -0.4 74,559 - +0.4 74,559 - -0.6 74,559 - -1.1 74,559 - +2.4 74,559 - -0.4 74,559 - -2.2 74,559 - +0.6 74,601 + +0.3 74,601 + -0.4 74,601 + +0.6 74,601 + -0.4 74,601 + +0.8 74,601 + +0.8 74,601 + -0.9 74,601 + -0.1 74,601 + +0.1 74,601 + +0.4 74,601 + -2.0 74,601 + -0.1 74,602 - +1.8 74,602 - +0.5 74,602 - +0.6 74,602 - -0.9 74,602 - -0.3 74,602 - +0.4 74,602 - -0.1 74,602 - -0.3 74,602 - -0.4 74,602 - -1.5 74,602 - +1.3 74,602 - +0.2 74,602 - -2.0 74,602 - +0.8 74,602 - +0.5 74,602 - +1.1 74,602 - -0.3 74,602 - +0.3 74,605 + -0.1 74,669 + -0.3 74,703 + +0.6 74,715 + -1.1 74,716 - -0.8 74,796 + +0.0 74,796 + -0.0 74,797 - -0.6 74,797 - +0.4 74,797 - +0.2 74,797 - +0.2 74,797 - -0.2 74,797 - +1.6 74,797 - +0.9 74,922 + +0.6 74,922 + -0.1 74,922 + -1.0 75,032 + -1.0 75,032 + +0.6 75,032 + +1.4 75,033 - +0.0 75,033 - +0.8 75,180 + DZA65_RS00310 0.21 -0.3 75,180 + DZA65_RS00310 0.21 +1.1 75,261 + DZA65_RS00310 0.27 +0.3 75,261 + DZA65_RS00310 0.27 +0.3 75,261 + DZA65_RS00310 0.27 +1.7 75,261 + DZA65_RS00310 0.27 -0.1 75,262 - DZA65_RS00310 0.27 +0.3 75,262 - DZA65_RS00310 0.27 +0.8 75,397 + DZA65_RS00310 0.37 +0.4 75,397 + DZA65_RS00310 0.37 +1.0 75,397 + DZA65_RS00310 0.37 -0.8 75,397 + DZA65_RS00310 0.37 +0.6 75,397 + DZA65_RS00310 0.37 +0.4 75,397 + DZA65_RS00310 0.37 +0.5 75,397 + DZA65_RS00310 0.37 +0.2 75,397 + DZA65_RS00310 0.37 -0.7 75,397 + DZA65_RS00310 0.37 +0.6 75,398 - DZA65_RS00310 0.37 +0.3 75,398 - DZA65_RS00310 0.37 +0.7 75,398 - DZA65_RS00310 0.37 -0.8 75,398 - DZA65_RS00310 0.37 +0.5 75,398 - DZA65_RS00310 0.37 -0.1 75,398 - DZA65_RS00310 0.37 -1.7 75,398 - DZA65_RS00310 0.37 -0.4 75,398 - DZA65_RS00310 0.37 -0.2 75,398 - DZA65_RS00310 0.37 +0.1 75,495 + DZA65_RS00310 0.44 -0.4 75,495 + DZA65_RS00310 0.44 -0.1 75,496 - DZA65_RS00310 0.44 -1.2 75,496 - DZA65_RS00310 0.44 +0.3 75,502 - DZA65_RS00310 0.45 +0.3 75,554 - DZA65_RS00310 0.49 -1.3
Or see this region's nucleotide sequence