Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00195 and DZA65_RS00200 are separated by 499 nucleotides DZA65_RS00200 and DZA65_RS00205 overlap by 4 nucleotides DZA65_RS00205 and DZA65_RS00210 are separated by 239 nucleotides
DZA65_RS00195: DZA65_RS00195 - glyoxylate/hydroxypyruvate reductase GhrB, at 45,305 to 46,267
_RS00195
DZA65_RS00200: DZA65_RS00200 - N-acetyltransferase, at 46,767 to 47,222
_RS00200
DZA65_RS00205: DZA65_RS00205 - DNA-3-methyladenine glycosylase I, at 47,219 to 47,779
_RS00205
DZA65_RS00210: DZA65_RS00210 - sulfite exporter TauE/SafE family protein, at 48,019 to 48,825
_RS00210
Position (kb) 47
48 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 46.223 kb on + strand at 46.245 kb on + strand at 46.246 kb on - strand at 46.246 kb on - strand at 46.246 kb on - strand at 46.340 kb on + strand at 46.340 kb on + strand at 46.341 kb on - strand at 46.351 kb on - strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.375 kb on + strand at 46.376 kb on - strand at 46.409 kb on + strand at 46.409 kb on + strand at 46.409 kb on + strand at 46.432 kb on + strand at 46.432 kb on + strand at 46.433 kb on - strand at 46.440 kb on - strand at 46.649 kb on - strand at 46.649 kb on - strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.676 kb on + strand at 46.677 kb on - strand at 46.677 kb on - strand at 46.687 kb on + strand at 46.687 kb on + strand at 46.687 kb on + strand at 46.687 kb on + strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.688 kb on - strand at 46.692 kb on + strand at 46.692 kb on + strand at 46.693 kb on - strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.716 kb on + strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.717 kb on - strand at 46.718 kb on + strand at 46.736 kb on - strand at 46.812 kb on - strand at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.843 kb on + strand, within DZA65_RS00200 at 46.844 kb on - strand, within DZA65_RS00200 at 46.844 kb on - strand, within DZA65_RS00200 at 46.860 kb on - strand, within DZA65_RS00200 at 46.862 kb on + strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.863 kb on - strand, within DZA65_RS00200 at 46.879 kb on + strand, within DZA65_RS00200 at 46.879 kb on + strand at 46.879 kb on + strand, within DZA65_RS00200 at 46.879 kb on + strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.880 kb on - strand, within DZA65_RS00200 at 46.909 kb on + strand, within DZA65_RS00200 at 46.909 kb on + strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.910 kb on - strand, within DZA65_RS00200 at 46.946 kb on + strand, within DZA65_RS00200 at 46.946 kb on + strand, within DZA65_RS00200 at 46.946 kb on + strand, within DZA65_RS00200 at 46.989 kb on - strand, within DZA65_RS00200 at 46.989 kb on - strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.092 kb on + strand, within DZA65_RS00200 at 47.092 kb on + strand, within DZA65_RS00200 at 47.093 kb on - strand, within DZA65_RS00200 at 47.093 kb on - strand, within DZA65_RS00200 at 47.141 kb on + strand, within DZA65_RS00200 at 47.142 kb on - strand, within DZA65_RS00200 at 47.176 kb on - strand, within DZA65_RS00200 at 47.176 kb on - strand, within DZA65_RS00200 at 47.285 kb on - strand, within DZA65_RS00205 at 47.312 kb on - strand, within DZA65_RS00205 at 47.405 kb on - strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.435 kb on - strand, within DZA65_RS00205 at 47.435 kb on - strand, within DZA65_RS00205 at 47.495 kb on - strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.522 kb on + strand, within DZA65_RS00205 at 47.522 kb on + strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.733 kb on + strand at 47.733 kb on + strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.742 kb on + strand at 47.743 kb on - strand at 47.819 kb on + strand at 47.819 kb on + strand at 47.820 kb on - strand at 47.820 kb on - strand at 47.820 kb on - strand at 47.835 kb on + strand at 47.836 kb on - strand at 47.836 kb on - strand at 47.852 kb on - strand at 47.852 kb on - strand at 47.861 kb on + strand at 47.862 kb on - strand at 47.870 kb on + strand at 47.925 kb on + strand at 47.926 kb on - strand at 47.926 kb on - strand at 47.926 kb on - strand at 47.972 kb on + strand at 47.972 kb on + strand at 47.972 kb on + strand at 47.973 kb on - strand at 47.973 kb on - strand at 47.998 kb on + strand at 47.998 kb on + strand at 47.999 kb on - strand at 47.999 kb on - strand at 47.999 kb on - strand at 47.999 kb on - strand at 48.000 kb on + strand at 48.001 kb on - strand at 48.001 kb on - strand at 48.017 kb on + strand at 48.017 kb on + strand at 48.018 kb on - strand at 48.018 kb on - strand at 48.018 kb on - strand at 48.043 kb on + strand at 48.044 kb on - strand at 48.044 kb on - strand at 48.072 kb on + strand at 48.072 kb on + strand at 48.073 kb on - strand at 48.073 kb on - strand at 48.073 kb on - strand at 48.084 kb on - strand at 48.084 kb on - strand at 48.090 kb on + strand at 48.105 kb on + strand, within DZA65_RS00210 at 48.105 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.109 kb on - strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.184 kb on - strand, within DZA65_RS00210 at 48.228 kb on + strand, within DZA65_RS00210 at 48.229 kb on - strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.607 kb on + strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.776 kb on + strand at 48.776 kb on + strand at 48.776 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 46,223 + +0.6 46,245 + -0.2 46,246 - +1.2 46,246 - -2.5 46,246 - -1.2 46,340 + +1.2 46,340 + -0.1 46,341 - +0.0 46,351 - +0.5 46,375 + -0.4 46,375 + -2.2 46,375 + +0.0 46,375 + +0.4 46,375 + -0.4 46,375 + -0.4 46,376 - +0.1 46,409 + -0.2 46,409 + -0.4 46,409 + -0.3 46,432 + +0.9 46,432 + -0.2 46,433 - -0.3 46,440 - -0.5 46,649 - +0.6 46,649 - +3.3 46,676 + -2.4 46,676 + +1.4 46,676 + +0.3 46,676 + +0.9 46,676 + +0.0 46,676 + +1.2 46,676 + +1.6 46,677 - -0.5 46,677 - +0.3 46,687 + -0.7 46,687 + +0.2 46,687 + -0.5 46,687 + -0.2 46,688 - +0.4 46,688 - +1.1 46,688 - +1.0 46,688 - +0.2 46,688 - +0.5 46,688 - -0.1 46,692 + +1.2 46,692 + +0.4 46,693 - -0.8 46,716 + -0.9 46,716 + +0.3 46,716 + +0.6 46,716 + +0.0 46,716 + +0.1 46,716 + +0.3 46,716 + -1.4 46,717 - +1.4 46,717 - +0.4 46,717 - +0.5 46,717 - +0.0 46,717 - +0.3 46,718 + -0.1 46,736 - +0.1 46,812 - -1.0 46,843 + DZA65_RS00200 0.17 -0.5 46,843 + DZA65_RS00200 0.17 +0.3 46,843 + DZA65_RS00200 0.17 -1.3 46,843 + DZA65_RS00200 0.17 +1.6 46,843 + DZA65_RS00200 0.17 +0.6 46,844 - DZA65_RS00200 0.17 +0.8 46,844 - DZA65_RS00200 0.17 +0.2 46,860 - DZA65_RS00200 0.20 +0.2 46,862 + DZA65_RS00200 0.21 +1.0 46,863 - DZA65_RS00200 0.21 +0.6 46,863 - DZA65_RS00200 0.21 +0.1 46,863 - DZA65_RS00200 0.21 -0.3 46,863 - DZA65_RS00200 0.21 -0.4 46,863 - DZA65_RS00200 0.21 +0.3 46,879 + DZA65_RS00200 0.25 +0.6 46,879 + +0.0 46,879 + DZA65_RS00200 0.25 -0.8 46,879 + DZA65_RS00200 0.25 -1.1 46,880 - DZA65_RS00200 0.25 +0.0 46,880 - DZA65_RS00200 0.25 -0.1 46,880 - DZA65_RS00200 0.25 +0.3 46,880 - DZA65_RS00200 0.25 -0.8 46,909 + DZA65_RS00200 0.31 -0.2 46,909 + DZA65_RS00200 0.31 +1.8 46,910 - DZA65_RS00200 0.31 -1.6 46,910 - DZA65_RS00200 0.31 +0.0 46,910 - DZA65_RS00200 0.31 +0.3 46,910 - DZA65_RS00200 0.31 +0.4 46,946 + DZA65_RS00200 0.39 +0.7 46,946 + DZA65_RS00200 0.39 -0.6 46,946 + DZA65_RS00200 0.39 +0.1 46,989 - DZA65_RS00200 0.49 +0.2 46,989 - DZA65_RS00200 0.49 +0.1 47,065 + DZA65_RS00200 0.65 -0.3 47,065 + DZA65_RS00200 0.65 +0.2 47,065 + DZA65_RS00200 0.65 -1.5 47,065 + DZA65_RS00200 0.65 +0.4 47,092 + DZA65_RS00200 0.71 -0.1 47,092 + DZA65_RS00200 0.71 +0.2 47,093 - DZA65_RS00200 0.71 +0.4 47,093 - DZA65_RS00200 0.71 -0.0 47,141 + DZA65_RS00200 0.82 +0.8 47,142 - DZA65_RS00200 0.82 -0.7 47,176 - DZA65_RS00200 0.90 -0.6 47,176 - DZA65_RS00200 0.90 -0.2 47,285 - DZA65_RS00205 0.12 -0.2 47,312 - DZA65_RS00205 0.17 -1.0 47,405 - DZA65_RS00205 0.33 -1.4 47,434 + DZA65_RS00205 0.38 +0.4 47,434 + DZA65_RS00205 0.38 -1.1 47,434 + DZA65_RS00205 0.38 +0.3 47,434 + DZA65_RS00205 0.38 +0.2 47,435 - DZA65_RS00205 0.39 -0.5 47,435 - DZA65_RS00205 0.39 +1.1 47,495 - DZA65_RS00205 0.49 +0.6 47,497 + DZA65_RS00205 0.50 -0.1 47,497 + DZA65_RS00205 0.50 -1.4 47,497 + DZA65_RS00205 0.50 -0.4 47,497 + DZA65_RS00205 0.50 +1.3 47,497 + DZA65_RS00205 0.50 +0.2 47,498 - DZA65_RS00205 0.50 +0.9 47,498 - DZA65_RS00205 0.50 +1.3 47,498 - DZA65_RS00205 0.50 -0.1 47,498 - DZA65_RS00205 0.50 +1.2 47,498 - DZA65_RS00205 0.50 -0.1 47,522 + DZA65_RS00205 0.54 +0.3 47,522 + DZA65_RS00205 0.54 -0.2 47,523 - DZA65_RS00205 0.54 -0.6 47,523 - DZA65_RS00205 0.54 +0.3 47,523 - DZA65_RS00205 0.54 -0.5 47,523 - DZA65_RS00205 0.54 +0.0 47,733 + +0.5 47,733 + +0.4 47,734 - +0.7 47,734 - +0.9 47,734 - +0.4 47,734 - -0.5 47,734 - -0.2 47,734 - -0.3 47,742 + -2.4 47,743 - +0.2 47,819 + +1.5 47,819 + +1.1 47,820 - -1.5 47,820 - -0.5 47,820 - -1.3 47,835 + +0.6 47,836 - -0.6 47,836 - -2.1 47,852 - -0.3 47,852 - +0.0 47,861 + -1.1 47,862 - +1.2 47,870 + -0.4 47,925 + -1.0 47,926 - +0.6 47,926 - -0.2 47,926 - +1.3 47,972 + +0.2 47,972 + +0.4 47,972 + +0.6 47,973 - +2.6 47,973 - -2.4 47,998 + -0.1 47,998 + -0.3 47,999 - -0.4 47,999 - -0.2 47,999 - -0.2 47,999 - +0.6 48,000 + -0.1 48,001 - -0.1 48,001 - -0.8 48,017 + +0.4 48,017 + +0.2 48,018 - -1.5 48,018 - -2.4 48,018 - -0.4 48,043 + +0.6 48,044 - +1.0 48,044 - +0.2 48,072 + -0.4 48,072 + +0.5 48,073 - +0.1 48,073 - -2.2 48,073 - +0.6 48,084 - +0.7 48,084 - -1.0 48,090 + +0.6 48,105 + DZA65_RS00210 0.11 +1.5 48,105 + DZA65_RS00210 0.11 +0.4 48,108 + DZA65_RS00210 0.11 +0.2 48,108 + DZA65_RS00210 0.11 +1.0 48,108 + DZA65_RS00210 0.11 +1.8 48,108 + DZA65_RS00210 0.11 +0.9 48,108 + DZA65_RS00210 0.11 -0.4 48,109 - DZA65_RS00210 0.11 -1.9 48,183 + DZA65_RS00210 0.20 -0.2 48,183 + DZA65_RS00210 0.20 +0.3 48,183 + DZA65_RS00210 0.20 +0.6 48,183 + DZA65_RS00210 0.20 +0.6 48,183 + DZA65_RS00210 0.20 +0.3 48,184 - DZA65_RS00210 0.20 -1.5 48,228 + DZA65_RS00210 0.26 +0.6 48,229 - DZA65_RS00210 0.26 -0.4 48,373 + DZA65_RS00210 0.44 -1.1 48,373 + DZA65_RS00210 0.44 +1.0 48,373 + DZA65_RS00210 0.44 -0.5 48,373 + DZA65_RS00210 0.44 -0.4 48,373 + DZA65_RS00210 0.44 -1.1 48,373 + DZA65_RS00210 0.44 -0.6 48,373 + DZA65_RS00210 0.44 +2.2 48,374 - DZA65_RS00210 0.44 -0.1 48,374 - DZA65_RS00210 0.44 -2.4 48,374 - DZA65_RS00210 0.44 -1.8 48,374 - DZA65_RS00210 0.44 +0.3 48,374 - DZA65_RS00210 0.44 -0.4 48,374 - DZA65_RS00210 0.44 +1.9 48,374 - DZA65_RS00210 0.44 +0.5 48,607 + DZA65_RS00210 0.73 +0.4 48,608 - DZA65_RS00210 0.73 -0.4 48,608 - DZA65_RS00210 0.73 -0.2 48,608 - DZA65_RS00210 0.73 +0.0 48,608 - DZA65_RS00210 0.73 -0.2 48,608 - DZA65_RS00210 0.73 -2.5 48,608 - DZA65_RS00210 0.73 -1.5 48,658 + DZA65_RS00210 0.79 -0.1 48,658 + DZA65_RS00210 0.79 -0.4 48,658 + DZA65_RS00210 0.79 -1.0 48,658 + DZA65_RS00210 0.79 -0.4 48,658 + DZA65_RS00210 0.79 +0.5 48,658 + DZA65_RS00210 0.79 +0.7 48,659 - DZA65_RS00210 0.79 -0.2 48,659 - DZA65_RS00210 0.79 -0.6 48,659 - DZA65_RS00210 0.79 -0.4 48,776 + +0.5 48,776 + -0.0 48,776 + -1.8
Or see this region's nucleotide sequence