Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22155

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,790,251	+		DZA65_RS22150	0.80	-1.4
4,790,523	-				+0.8
4,790,528	+				-1.5
4,790,576	+				-1.5
4,790,661	+				-0.8
4,790,669	+				-1.2
4,790,669	+				+1.4
4,790,670	-				-2.2
4,790,670	-				-1.0
4,790,685	+				+0.9
4,790,685	+				-0.4
4,790,685	+				+0.5
4,790,686	-				-0.9
4,790,686	-				-1.5
4,790,687	+				-0.8
4,790,687	+				+0.8
4,790,687	+				-1.4
4,790,687	+				+0.1
4,790,687	+				+0.2
4,790,687	+				-0.5
4,790,687	+				+1.1
4,790,688	-				-0.5
4,790,688	-				-1.4
4,790,688	-				+1.8
4,790,688	-				+0.8
4,790,688	-				-0.6
4,790,688	-				+0.0
4,790,688	-				+0.5
4,790,688	-				-0.3
4,790,693	+				-0.5
4,790,694	-				+0.2
4,790,694	-				+1.5
4,790,694	-				-0.4
4,790,708	+				-0.5
4,790,709	-				-1.2
4,790,709	-				-0.4
4,790,734	+				+0.0
4,790,734	+				-0.0
4,790,734	+				-0.2
4,790,734	+				-0.5
4,790,734	+				+0.5
4,790,735	-				+0.1
4,790,735	-				+0.4
4,790,753	+		DZA65_RS22155	0.12	-0.5
4,790,753	+		DZA65_RS22155	0.12	+0.5
4,790,753	+		DZA65_RS22155	0.12	-1.4
4,790,753	+		DZA65_RS22155	0.12	-1.4
4,790,753	+		DZA65_RS22155	0.12	-0.4
4,790,753	+		DZA65_RS22155	0.12	-1.4
4,790,753	+		DZA65_RS22155	0.12	-1.2
4,790,753	+		DZA65_RS22155	0.12	-0.9
4,790,754	-		DZA65_RS22155	0.12	-0.9
4,790,767	+		DZA65_RS22155	0.14	-0.4
4,790,767	+		DZA65_RS22155	0.14	-0.5
4,790,997	+		DZA65_RS22155	0.47	-1.5
4,790,997	+		DZA65_RS22155	0.47	-0.2
4,790,997	+		DZA65_RS22155	0.47	-2.8
4,790,997	+		DZA65_RS22155	0.47	-1.9
4,790,998	-		DZA65_RS22155	0.47	-1.3
4,790,998	-		DZA65_RS22155	0.47	-1.4
4,790,998	-		DZA65_RS22155	0.47	-0.8
4,791,008	+		DZA65_RS22155	0.49	+0.8
4,791,008	+		DZA65_RS22155	0.49	-2.2
4,791,180	+		DZA65_RS22155	0.74	-0.6
4,791,180	+		DZA65_RS22155	0.74	-0.2
4,791,181	-		DZA65_RS22155	0.74	-0.5
4,791,181	-		DZA65_RS22155	0.74	-0.7
4,791,181	-		DZA65_RS22155	0.74	-0.4
4,791,193	-		DZA65_RS22155	0.75	-0.3
4,791,302	+				+0.1
4,791,383	-				+0.2
4,791,394	-				+0.9
4,791,468	+				+0.4
4,791,468	+				+0.2
4,791,469	-				-0.2
4,791,469	-				-1.2
4,791,486	+				-0.4
4,791,487	-				+0.1
4,791,492	-				+0.5
4,791,512	+				+0.6
4,791,512	+				-0.5
4,791,520	+				-1.2
4,791,542	+				-0.9
4,791,542	+				-1.0
4,791,542	+				-0.5
4,791,542	+				+0.8
4,791,542	+				-0.5
4,791,542	+				-0.1
4,791,543	-				-0.6
4,791,543	-				-0.9
4,791,543	-				-0.8
4,791,543	-				+0.0
4,791,543	-				-0.8
4,791,543	-				-0.8
4,791,552	+				+1.1
4,791,552	+				-1.2
4,791,552	+				-1.4
4,791,553	-				+0.7
4,791,553	-				-0.5
4,791,553	-				-0.2
4,791,553	-				+0.2
4,791,553	-				+0.4
4,791,553	-				-2.4
4,791,553	-				-2.4
4,791,553	-				-0.2
4,791,553	-				+0.5
4,791,553	-				-0.1
4,791,580	+		DZA65_RS22160	0.10	-1.0
4,791,580	+		DZA65_RS22160	0.10	-1.8
4,791,581	-		DZA65_RS22160	0.11	-0.1
4,791,581	-		DZA65_RS22160	0.11	-1.5
4,791,581	-		DZA65_RS22160	0.11	-0.5
4,791,581	-		DZA65_RS22160	0.11	-0.5
4,791,581	-		DZA65_RS22160	0.11	+0.2
4,791,653	-		DZA65_RS22160	0.14	+0.5
4,791,653	-		DZA65_RS22160	0.14	-1.9
4,791,653	-		DZA65_RS22160	0.14	+0.8
4,791,707	+		DZA65_RS22160	0.17	-1.1
4,791,717	+		DZA65_RS22160	0.17	+1.8
4,791,718	-		DZA65_RS22160	0.17	+0.2
4,791,718	-		DZA65_RS22160	0.17	-0.6
4,791,815	+		DZA65_RS22160	0.22	-0.5
4,791,844	+		DZA65_RS22160	0.23	+1.5
4,791,845	-		DZA65_RS22160	0.23	+0.2
4,791,882	+		DZA65_RS22160	0.25	-0.5
4,791,882	+		DZA65_RS22160	0.25	-1.4
4,791,882	+		DZA65_RS22160	0.25	-1.1
4,791,882	+		DZA65_RS22160	0.25	-0.8
4,791,882	+		DZA65_RS22160	0.25	+1.3
4,791,882	+		DZA65_RS22160	0.25	+0.5
4,791,883	-		DZA65_RS22160	0.25	+0.8
4,791,883	-		DZA65_RS22160	0.25	+0.0
4,791,883	-		DZA65_RS22160	0.25	+0.2
4,791,883	-		DZA65_RS22160	0.25	-1.4
4,791,883	-		DZA65_RS22160	0.25	-0.9
4,791,883	-		DZA65_RS22160	0.25	-0.5
4,791,886	+		DZA65_RS22160	0.25	-1.4
4,791,887	-		DZA65_RS22160	0.25	+0.8
4,792,066	+		DZA65_RS22160	0.34	-1.0
4,792,066	+		DZA65_RS22160	0.34	-1.9
4,792,066	+		DZA65_RS22160	0.34	-0.2
4,792,066	+		DZA65_RS22160	0.34	-0.5
4,792,066	+		DZA65_RS22160	0.34	-0.3
4,792,067	-		DZA65_RS22160	0.34	+0.2
4,792,067	-		DZA65_RS22160	0.34	+0.5
4,792,067	-		DZA65_RS22160	0.34	+0.5
4,792,210	+		DZA65_RS22160	0.41	-0.6
4,792,211	-		DZA65_RS22160	0.41	-0.5
4,792,211	-		DZA65_RS22160	0.41	-1.6