Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21445 and DZA65_RS21450 are separated by 134 nucleotides DZA65_RS21450 and DZA65_RS21455 are separated by 161 nucleotides
DZA65_RS21445: DZA65_RS21445 - Si-specific NAD(P)(+) transhydrogenase, at 4,637,133 to 4,638,533
_RS21445
DZA65_RS21450: DZA65_RS21450 - DNA-binding transcriptional regulator OxyR, at 4,638,668 to 4,639,585
_RS21450
DZA65_RS21455: DZA65_RS21455 - glutathione peroxidase, at 4,639,747 to 4,640,478
_RS21455
Position (kb) 4638
4639
4640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4637.677 kb on - strand, within DZA65_RS21445 at 4637.805 kb on + strand, within DZA65_RS21445 at 4638.100 kb on - strand, within DZA65_RS21445 at 4638.168 kb on - strand, within DZA65_RS21445 at 4638.183 kb on + strand, within DZA65_RS21445 at 4638.183 kb on + strand, within DZA65_RS21445 at 4638.184 kb on - strand, within DZA65_RS21445 at 4638.184 kb on - strand, within DZA65_RS21445 at 4638.188 kb on + strand, within DZA65_RS21445 at 4638.438 kb on - strand at 4638.440 kb on + strand at 4638.440 kb on + strand at 4638.441 kb on - strand at 4638.441 kb on - strand at 4638.441 kb on - strand at 4638.567 kb on - strand at 4638.588 kb on + strand at 4638.588 kb on + strand at 4638.644 kb on + strand at 4638.648 kb on + strand at 4638.652 kb on + strand at 4638.669 kb on + strand at 4638.771 kb on + strand, within DZA65_RS21450 at 4638.772 kb on - strand, within DZA65_RS21450 at 4638.772 kb on - strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.808 kb on - strand, within DZA65_RS21450 at 4638.808 kb on - strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.874 kb on + strand, within DZA65_RS21450 at 4638.874 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.878 kb on - strand, within DZA65_RS21450 at 4638.878 kb on - strand, within DZA65_RS21450 at 4638.893 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.078 kb on - strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.241 kb on - strand, within DZA65_RS21450 at 4639.241 kb on - strand, within DZA65_RS21450 at 4639.275 kb on + strand, within DZA65_RS21450 at 4639.276 kb on - strand, within DZA65_RS21450 at 4639.276 kb on - strand, within DZA65_RS21450 at 4639.304 kb on - strand, within DZA65_RS21450 at 4639.568 kb on + strand at 4639.568 kb on + strand at 4639.568 kb on + strand at 4639.579 kb on + strand at 4639.579 kb on + strand at 4639.580 kb on - strand at 4639.580 kb on - strand at 4639.580 kb on - strand at 4639.622 kb on - strand at 4639.625 kb on + strand at 4639.626 kb on - strand at 4639.662 kb on + strand at 4639.669 kb on + strand at 4639.731 kb on + strand at 4639.731 kb on + strand at 4639.754 kb on + strand at 4639.754 kb on + strand at 4639.754 kb on + strand at 4639.755 kb on - strand at 4639.755 kb on - strand at 4639.755 kb on - strand at 4639.755 kb on - strand at 4639.755 kb on - strand at 4639.755 kb on - strand at 4639.784 kb on + strand at 4639.884 kb on + strand, within DZA65_RS21455 at 4639.884 kb on + strand, within DZA65_RS21455 at 4639.885 kb on - strand, within DZA65_RS21455 at 4639.885 kb on - strand, within DZA65_RS21455 at 4639.918 kb on + strand, within DZA65_RS21455 at 4639.918 kb on + strand, within DZA65_RS21455 at 4639.918 kb on + strand, within DZA65_RS21455 at 4639.918 kb on + strand, within DZA65_RS21455 at 4639.918 kb on + strand, within DZA65_RS21455 at 4639.918 kb on + strand at 4639.918 kb on + strand, within DZA65_RS21455 at 4639.918 kb on + strand, within DZA65_RS21455 at 4639.919 kb on - strand, within DZA65_RS21455 at 4639.919 kb on - strand, within DZA65_RS21455 at 4639.919 kb on - strand, within DZA65_RS21455 at 4639.919 kb on - strand, within DZA65_RS21455 at 4639.919 kb on - strand, within DZA65_RS21455 at 4639.919 kb on - strand, within DZA65_RS21455 at 4639.919 kb on - strand, within DZA65_RS21455 at 4639.920 kb on + strand, within DZA65_RS21455 at 4639.967 kb on + strand, within DZA65_RS21455 at 4639.968 kb on - strand, within DZA65_RS21455 at 4639.986 kb on + strand, within DZA65_RS21455 at 4639.986 kb on + strand, within DZA65_RS21455 at 4639.986 kb on + strand, within DZA65_RS21455 at 4639.986 kb on + strand, within DZA65_RS21455 at 4640.034 kb on + strand, within DZA65_RS21455 at 4640.034 kb on + strand, within DZA65_RS21455 at 4640.034 kb on + strand, within DZA65_RS21455 at 4640.129 kb on - strand, within DZA65_RS21455 at 4640.230 kb on + strand, within DZA65_RS21455 at 4640.230 kb on + strand, within DZA65_RS21455 at 4640.231 kb on - strand, within DZA65_RS21455 at 4640.231 kb on - strand, within DZA65_RS21455 at 4640.231 kb on - strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.245 kb on + strand, within DZA65_RS21455 at 4640.246 kb on - strand, within DZA65_RS21455 at 4640.246 kb on - strand, within DZA65_RS21455 at 4640.246 kb on - strand, within DZA65_RS21455 at 4640.246 kb on - strand, within DZA65_RS21455 at 4640.246 kb on - strand, within DZA65_RS21455 at 4640.246 kb on - strand, within DZA65_RS21455 at 4640.247 kb on + strand, within DZA65_RS21455 at 4640.247 kb on + strand, within DZA65_RS21455 at 4640.247 kb on + strand, within DZA65_RS21455 at 4640.247 kb on + strand, within DZA65_RS21455 at 4640.247 kb on + strand, within DZA65_RS21455 at 4640.247 kb on + strand, within DZA65_RS21455 at 4640.247 kb on + strand, within DZA65_RS21455 at 4640.248 kb on - strand, within DZA65_RS21455 at 4640.248 kb on - strand, within DZA65_RS21455 at 4640.248 kb on - strand, within DZA65_RS21455 at 4640.248 kb on - strand, within DZA65_RS21455 at 4640.248 kb on - strand, within DZA65_RS21455 at 4640.248 kb on - strand, within DZA65_RS21455 at 4640.248 kb on - strand, within DZA65_RS21455 at 4640.339 kb on - strand, within DZA65_RS21455 at 4640.400 kb on + strand, within DZA65_RS21455 at 4640.400 kb on + strand, within DZA65_RS21455 at 4640.401 kb on - strand, within DZA65_RS21455 at 4640.401 kb on - strand at 4640.417 kb on + strand at 4640.417 kb on + strand at 4640.417 kb on + strand at 4640.417 kb on + strand at 4640.417 kb on + strand at 4640.418 kb on - strand at 4640.560 kb on - strand at 4640.560 kb on - strand at 4640.560 kb on - strand at 4640.560 kb on - strand at 4640.560 kb on - strand at 4640.566 kb on - strand at 4640.580 kb on + strand at 4640.580 kb on + strand at 4640.581 kb on - strand at 4640.581 kb on - strand at 4640.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,637,677 - DZA65_RS21445 0.39 -0.5 4,637,805 + DZA65_RS21445 0.48 -1.3 4,638,100 - DZA65_RS21445 0.69 -0.6 4,638,168 - DZA65_RS21445 0.74 -1.0 4,638,183 + DZA65_RS21445 0.75 -1.4 4,638,183 + DZA65_RS21445 0.75 -0.5 4,638,184 - DZA65_RS21445 0.75 -0.4 4,638,184 - DZA65_RS21445 0.75 -0.8 4,638,188 + DZA65_RS21445 0.75 -0.5 4,638,438 - -1.2 4,638,440 + -2.0 4,638,440 + -0.8 4,638,441 - -2.5 4,638,441 - +1.4 4,638,441 - -0.6 4,638,567 - +1.2 4,638,588 + +1.1 4,638,588 + +0.1 4,638,644 + -0.4 4,638,648 + -1.4 4,638,652 + -0.8 4,638,669 + -0.2 4,638,771 + DZA65_RS21450 0.11 +0.5 4,638,772 - DZA65_RS21450 0.11 -0.7 4,638,772 - DZA65_RS21450 0.11 -0.5 4,638,787 + DZA65_RS21450 0.13 -2.1 4,638,787 + DZA65_RS21450 0.13 -1.3 4,638,787 + DZA65_RS21450 0.13 +0.5 4,638,788 - DZA65_RS21450 0.13 -1.4 4,638,788 - DZA65_RS21450 0.13 -0.9 4,638,788 - DZA65_RS21450 0.13 -0.5 4,638,807 + DZA65_RS21450 0.15 +0.3 4,638,807 + DZA65_RS21450 0.15 -2.3 4,638,807 + DZA65_RS21450 0.15 -1.0 4,638,808 - DZA65_RS21450 0.15 -0.0 4,638,808 - DZA65_RS21450 0.15 -2.4 4,638,819 + DZA65_RS21450 0.16 -1.4 4,638,819 + DZA65_RS21450 0.16 -1.0 4,638,819 + DZA65_RS21450 0.16 -1.6 4,638,820 - DZA65_RS21450 0.17 -0.4 4,638,820 - DZA65_RS21450 0.17 -0.5 4,638,820 - DZA65_RS21450 0.17 +0.4 4,638,820 - DZA65_RS21450 0.17 -0.1 4,638,874 + DZA65_RS21450 0.22 -0.5 4,638,874 + DZA65_RS21450 0.22 -0.8 4,638,877 + DZA65_RS21450 0.23 +0.2 4,638,877 + DZA65_RS21450 0.23 -0.4 4,638,877 + DZA65_RS21450 0.23 -0.5 4,638,878 - DZA65_RS21450 0.23 -1.7 4,638,878 - DZA65_RS21450 0.23 -1.0 4,638,893 + DZA65_RS21450 0.25 -1.0 4,639,077 + DZA65_RS21450 0.45 -0.8 4,639,077 + DZA65_RS21450 0.45 -1.3 4,639,077 + DZA65_RS21450 0.45 -1.0 4,639,077 + DZA65_RS21450 0.45 -0.8 4,639,077 + DZA65_RS21450 0.45 -1.6 4,639,078 - DZA65_RS21450 0.45 +1.8 4,639,218 + DZA65_RS21450 0.60 -0.5 4,639,218 + DZA65_RS21450 0.60 -0.1 4,639,218 + DZA65_RS21450 0.60 -1.7 4,639,218 + DZA65_RS21450 0.60 -1.9 4,639,218 + DZA65_RS21450 0.60 -0.5 4,639,218 + DZA65_RS21450 0.60 -0.5 4,639,218 + DZA65_RS21450 0.60 -0.4 4,639,218 + DZA65_RS21450 0.60 +0.2 4,639,219 - DZA65_RS21450 0.60 +0.2 4,639,219 - DZA65_RS21450 0.60 +0.2 4,639,219 - DZA65_RS21450 0.60 -0.0 4,639,219 - DZA65_RS21450 0.60 +0.1 4,639,240 + DZA65_RS21450 0.62 -0.1 4,639,240 + DZA65_RS21450 0.62 -0.8 4,639,240 + DZA65_RS21450 0.62 -0.8 4,639,240 + DZA65_RS21450 0.62 -1.0 4,639,241 - DZA65_RS21450 0.62 -0.2 4,639,241 - DZA65_RS21450 0.62 -1.5 4,639,275 + DZA65_RS21450 0.66 -0.2 4,639,276 - DZA65_RS21450 0.66 -0.5 4,639,276 - DZA65_RS21450 0.66 +0.2 4,639,304 - DZA65_RS21450 0.69 -1.0 4,639,568 + -1.6 4,639,568 + -0.8 4,639,568 + -0.8 4,639,579 + +0.2 4,639,579 + -1.9 4,639,580 - -1.1 4,639,580 - -2.4 4,639,580 - -0.7 4,639,622 - +0.5 4,639,625 + -0.2 4,639,626 - -0.8 4,639,662 + -0.2 4,639,669 + -0.7 4,639,731 + +1.4 4,639,731 + +1.8 4,639,754 + -0.7 4,639,754 + +0.8 4,639,754 + +1.8 4,639,755 - +0.6 4,639,755 - -1.4 4,639,755 - +0.6 4,639,755 - -0.9 4,639,755 - -0.2 4,639,755 - -0.6 4,639,784 + -0.1 4,639,884 + DZA65_RS21455 0.19 -0.8 4,639,884 + DZA65_RS21455 0.19 -0.1 4,639,885 - DZA65_RS21455 0.19 +0.1 4,639,885 - DZA65_RS21455 0.19 -0.4 4,639,918 + DZA65_RS21455 0.23 -0.8 4,639,918 + DZA65_RS21455 0.23 -0.1 4,639,918 + DZA65_RS21455 0.23 -0.3 4,639,918 + DZA65_RS21455 0.23 +0.6 4,639,918 + DZA65_RS21455 0.23 +0.2 4,639,918 + +1.1 4,639,918 + DZA65_RS21455 0.23 +0.8 4,639,918 + DZA65_RS21455 0.23 -0.9 4,639,919 - DZA65_RS21455 0.23 -0.2 4,639,919 - DZA65_RS21455 0.23 +1.8 4,639,919 - DZA65_RS21455 0.23 -1.4 4,639,919 - DZA65_RS21455 0.23 +1.1 4,639,919 - DZA65_RS21455 0.23 -0.1 4,639,919 - DZA65_RS21455 0.23 +0.8 4,639,919 - DZA65_RS21455 0.23 -1.1 4,639,920 + DZA65_RS21455 0.24 -2.3 4,639,967 + DZA65_RS21455 0.30 -0.3 4,639,968 - DZA65_RS21455 0.30 +0.4 4,639,986 + DZA65_RS21455 0.33 +0.8 4,639,986 + DZA65_RS21455 0.33 -0.2 4,639,986 + DZA65_RS21455 0.33 +0.1 4,639,986 + DZA65_RS21455 0.33 +0.1 4,640,034 + DZA65_RS21455 0.39 -0.2 4,640,034 + DZA65_RS21455 0.39 +0.8 4,640,034 + DZA65_RS21455 0.39 -1.5 4,640,129 - DZA65_RS21455 0.52 -2.9 4,640,230 + DZA65_RS21455 0.66 -1.3 4,640,230 + DZA65_RS21455 0.66 +0.6 4,640,231 - DZA65_RS21455 0.66 -1.9 4,640,231 - DZA65_RS21455 0.66 -0.8 4,640,231 - DZA65_RS21455 0.66 -0.8 4,640,245 + DZA65_RS21455 0.68 -1.7 4,640,245 + DZA65_RS21455 0.68 +1.8 4,640,245 + DZA65_RS21455 0.68 -1.5 4,640,245 + DZA65_RS21455 0.68 -0.2 4,640,245 + DZA65_RS21455 0.68 -1.2 4,640,245 + DZA65_RS21455 0.68 +0.8 4,640,245 + DZA65_RS21455 0.68 -0.7 4,640,245 + DZA65_RS21455 0.68 -1.7 4,640,246 - DZA65_RS21455 0.68 +0.3 4,640,246 - DZA65_RS21455 0.68 -1.0 4,640,246 - DZA65_RS21455 0.68 -0.2 4,640,246 - DZA65_RS21455 0.68 -1.4 4,640,246 - DZA65_RS21455 0.68 -0.3 4,640,246 - DZA65_RS21455 0.68 -0.2 4,640,247 + DZA65_RS21455 0.68 -0.8 4,640,247 + DZA65_RS21455 0.68 -0.4 4,640,247 + DZA65_RS21455 0.68 -0.5 4,640,247 + DZA65_RS21455 0.68 -0.9 4,640,247 + DZA65_RS21455 0.68 -0.7 4,640,247 + DZA65_RS21455 0.68 -1.6 4,640,247 + DZA65_RS21455 0.68 +1.0 4,640,248 - DZA65_RS21455 0.68 +0.5 4,640,248 - DZA65_RS21455 0.68 +0.5 4,640,248 - DZA65_RS21455 0.68 +0.6 4,640,248 - DZA65_RS21455 0.68 +0.7 4,640,248 - DZA65_RS21455 0.68 -1.2 4,640,248 - DZA65_RS21455 0.68 -0.2 4,640,248 - DZA65_RS21455 0.68 -0.6 4,640,339 - DZA65_RS21455 0.81 -1.5 4,640,400 + DZA65_RS21455 0.89 -0.7 4,640,400 + DZA65_RS21455 0.89 -0.8 4,640,401 - DZA65_RS21455 0.89 -1.8 4,640,401 - +0.2 4,640,417 + -1.1 4,640,417 + +1.0 4,640,417 + +1.0 4,640,417 + +0.8 4,640,417 + -1.7 4,640,418 - -0.3 4,640,560 - +0.3 4,640,560 - -0.5 4,640,560 - +0.1 4,640,560 - -0.4 4,640,560 - -0.8 4,640,566 - +0.2 4,640,580 + +0.5 4,640,580 + -0.2 4,640,581 - -0.1 4,640,581 - +1.0 4,640,581 - +0.2
Or see this region's nucleotide sequence