Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20660

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,454,952	+		DZA65_RS20655	0.30	-0.5
4,454,953	-		DZA65_RS20655	0.30	-0.8
4,455,043	+		DZA65_RS20655	0.38	-0.8
4,455,044	-		DZA65_RS20655	0.38	-0.5
4,455,076	-		DZA65_RS20655	0.40	-0.1
4,455,082	+		DZA65_RS20655	0.41	-0.2
4,455,082	+		DZA65_RS20655	0.41	-0.3
4,455,082	+		DZA65_RS20655	0.41	+0.1
4,455,082	+		DZA65_RS20655	0.41	+0.1
4,455,082	+		DZA65_RS20655	0.41	-0.9
4,455,082	+		DZA65_RS20655	0.41	-1.7
4,455,082	+		DZA65_RS20655	0.41	-0.6
4,455,082	+		DZA65_RS20655	0.41	-1.1
4,455,082	+		DZA65_RS20655	0.41	-2.9
4,455,082	+		DZA65_RS20655	0.41	-0.4
4,455,082	+		DZA65_RS20655	0.41	-0.3
4,455,083	-		DZA65_RS20655	0.41	-0.3
4,455,083	-		DZA65_RS20655	0.41	+0.5
4,455,083	-		DZA65_RS20655	0.41	-1.0
4,455,083	-		DZA65_RS20655	0.41	-0.1
4,455,083	-		DZA65_RS20655	0.41	-0.2
4,455,083	-		DZA65_RS20655	0.41	-0.2
4,455,083	-		DZA65_RS20655	0.41	-0.9
4,455,083	-		DZA65_RS20655	0.41	+0.1
4,455,083	-		DZA65_RS20655	0.41	-0.4
4,455,084	+		DZA65_RS20655	0.41	+0.9
4,455,084	+		DZA65_RS20655	0.41	-0.5
4,455,084	+		DZA65_RS20655	0.41	-0.1
4,455,084	+		DZA65_RS20655	0.41	+1.3
4,455,084	+		DZA65_RS20655	0.41	-1.2
4,455,084	+		DZA65_RS20655	0.41	-2.4
4,455,084	+		DZA65_RS20655	0.41	+1.9
4,455,084	+		DZA65_RS20655	0.41	-2.1
4,455,084	+		DZA65_RS20655	0.41	-0.1
4,455,084	+		DZA65_RS20655	0.41	+0.1
4,455,084	+		DZA65_RS20655	0.41	-0.2
4,455,084	+		DZA65_RS20655	0.41	+1.7
4,455,084	+		DZA65_RS20655	0.41	+0.5
4,455,085	-		DZA65_RS20655	0.41	-0.8
4,455,085	-		DZA65_RS20655	0.41	-1.0
4,455,085	-		DZA65_RS20655	0.41	-1.1
4,455,085	-		DZA65_RS20655	0.41	-0.3
4,455,085	-		DZA65_RS20655	0.41	-0.1
4,455,085	-		DZA65_RS20655	0.41	+1.7
4,455,085	-		DZA65_RS20655	0.41	-0.9
4,455,085	-		DZA65_RS20655	0.41	+0.7
4,455,085	-		DZA65_RS20655	0.41	-0.0
4,455,085	-		DZA65_RS20655	0.41	+0.1
4,455,085	-		DZA65_RS20655	0.41	-0.9
4,455,085	-		DZA65_RS20655	0.41	-1.8
4,455,150	+		DZA65_RS20655	0.46	-1.4
4,455,336	+		DZA65_RS20655	0.62	-0.5
4,455,337	-		DZA65_RS20655	0.62	-1.1
4,455,374	-		DZA65_RS20655	0.65	-1.0
4,455,393	+		DZA65_RS20655	0.66	-0.6
4,455,393	+		DZA65_RS20655	0.66	+0.4
4,455,394	-		DZA65_RS20655	0.66	-0.3
4,455,394	-		DZA65_RS20655	0.66	+1.7
4,455,394	-		DZA65_RS20655	0.66	-1.8
4,455,394	-		DZA65_RS20655	0.66	+0.2
4,455,417	+		DZA65_RS20655	0.68	-0.0
4,455,417	+		DZA65_RS20655	0.68	-1.1
4,455,418	-		DZA65_RS20655	0.68	+1.0
4,455,562	+		DZA65_RS20655	0.80	+0.7
4,455,562	+		DZA65_RS20655	0.80	-1.1
4,455,562	+		DZA65_RS20655	0.80	+1.7
4,455,563	-		DZA65_RS20655	0.80	-0.5
4,455,674	-		DZA65_RS20655	0.89	+0.0
4,455,674	-		DZA65_RS20655	0.89	-0.3
4,455,675	+		DZA65_RS20655	0.89	-0.3
4,455,675	+		DZA65_RS20655	0.89	+1.3
4,455,675	+		DZA65_RS20655	0.89	-1.8
4,455,675	+		DZA65_RS20655	0.89	-2.0
4,455,675	+		DZA65_RS20655	0.89	-0.8
4,455,675	+		DZA65_RS20655	0.89	+0.6
4,455,675	+		DZA65_RS20655	0.89	-0.0
4,455,675	+		DZA65_RS20655	0.89	+0.2
4,455,675	+		DZA65_RS20655	0.89	-1.8
4,455,675	+		DZA65_RS20655	0.89	-0.1
4,455,676	-		DZA65_RS20655	0.89	-0.3
4,455,676	-		DZA65_RS20655	0.89	-0.4
4,455,676	-		DZA65_RS20655	0.89	-0.6
4,455,676	-		DZA65_RS20655	0.89	-0.6
4,455,744	+				+1.0
4,455,745	-				+0.6
4,455,745	-				-2.3
4,455,758	+				-0.1
4,455,758	+				-1.1
4,455,758	+				+1.1
4,455,758	+				-0.8
4,455,759	-				-0.0
4,455,759	-				+0.4
4,455,759	-				-0.6
4,455,768	+				-0.5
4,455,768	+				-1.6
4,455,768	+				-0.4
4,455,768	+				+0.2
4,455,768	+				-0.1
4,455,768	+				-1.7
4,455,768	+				+0.1
4,455,768	+				-0.1
4,455,769	-				+0.1
4,455,769	-				-1.5
4,455,769	-				+0.4
4,455,769	-				+1.1
4,455,769	-				+1.7
4,455,772	+				-1.5
4,455,772	+				-1.0
4,455,772	+				-0.2
4,455,772	+				-0.7
4,455,772	+				-0.4
4,455,773	-				+0.2
4,455,782	+				-0.2
4,455,782	+				-0.2
4,455,782	+				-0.3
4,455,783	-				-0.6
4,455,846	+				-0.0
4,455,847	-				+0.7
4,455,859	+				-0.6
4,455,860	-				+0.1
4,455,928	-				-0.2
4,455,929	+				-0.2
4,456,279	+		DZA65_RS20660	0.61	-0.9
4,456,339	+		DZA65_RS20660	0.72	+0.3
4,456,376	+		DZA65_RS20660	0.78	-2.7
4,456,411	+		DZA65_RS20660	0.84	-0.3
4,456,412	-		DZA65_RS20660	0.84	-1.1
4,456,449	+				-1.2
4,456,450	-				+0.3
4,456,455	+				-0.3
4,456,455	+				+0.7
4,456,455	+				+0.4
4,456,456	-				-0.4
4,456,464	+				+0.1
4,456,464	+				+0.5
4,456,464	+				-0.7
4,456,464	+				-2.5
4,456,465	-				-0.6
4,456,465	-				-0.3
4,456,465	-				+0.7
4,456,465	-				-0.0
4,456,465	-				+0.4
4,456,465	-				-0.6
4,456,465	-				-1.9
4,456,465	-				+1.3
4,456,465	-				-0.3
4,456,468	+				-1.4
4,456,468	+				-0.6
4,456,469	-				-0.4
4,456,469	-				-0.1
4,456,469	-				+0.3
4,456,469	-				+0.5
4,456,479	+				+0.1
4,456,479	+				+0.4
4,456,479	+				-0.8
4,456,479	+				+2.5
4,456,479	+				-0.6
4,456,479	+				+0.1
4,456,479	+				+0.2
4,456,479	+				+0.0
4,456,480	-				-2.3
4,456,480	-				-0.9
4,456,480	-				-2.1
4,456,480	-				-0.9
4,456,480	-				+0.1
4,456,480	-				-1.1
4,456,480	-				-2.5
4,456,480	-				+1.0
4,456,480	-				+0.7
4,456,490	-				+0.4
4,456,493	+				+0.2
4,456,493	+				+0.1
4,456,493	+				+0.1
4,456,493	+				-0.8
4,456,494	-				+1.4
4,456,494	-				-1.0
4,456,494	-				-0.6
4,456,501	+				-1.5
4,456,501	+				+0.8
4,456,501	+				-0.3
4,456,501	+				-0.8
4,456,501	+				+0.8
4,456,501	+				-0.3
4,456,501	+				+0.7
4,456,501	+				-0.9
4,456,501	+				-0.4
4,456,501	+				-0.6
4,456,502	-				-0.6
4,456,502	-				+2.0
4,456,502	-				+2.1
4,456,502	-				-0.3
4,456,502	-				+0.7
4,456,502	-				+2.3
4,456,502	-				-0.4
4,456,507	+				-0.1
4,456,507	+				+2.3
4,456,508	-				-0.5
4,456,508	-				+1.7
4,456,508	-				+0.2
4,456,508	-				-0.2
4,456,511	+				+0.1
4,456,511	+				+1.1
4,456,511	+				+0.7
4,456,511	+				+3.7
4,456,512	-				+0.4
4,456,512	-				-1.1
4,456,512	-				-0.6
4,456,512	-				-0.5
4,456,551	+				+0.3
4,456,551	+				+0.7
4,456,551	+				-1.1
4,456,551	+				-0.7
4,456,551	+				+0.2
4,456,551	+				-2.4
4,456,552	-				-1.1
4,456,552	-				-1.5
4,456,552	-				+0.1
4,456,555	+				-1.1
4,456,555	+				-0.6
4,456,555	+				-0.6
4,456,555	+				+0.7
4,456,555	+				+1.4
4,456,555	+				-0.3
4,456,555	+				+0.6
4,456,555	+				-1.5
4,456,555	+				-2.3
4,456,556	-				-0.5
4,456,556	-				+0.3
4,456,647	+				-0.6
4,456,647	+				-1.0
4,456,647	+				+0.1
4,456,647	+				+0.5
4,456,648	-				+0.4
4,456,716	+				+2.3
4,456,794	+				-0.5
4,456,795	-				-1.4
4,456,803	+				-0.5
4,456,804	-				-1.3
4,456,804	-				-1.6
4,456,805	+				-1.8
4,456,805	+				-1.1
4,456,806	-				-0.8
4,456,806	-				+0.3
4,456,806	-				+0.2
4,456,806	-				-1.4
4,456,859	+		DZA65_RS20665	0.10	-0.1
4,456,859	+		DZA65_RS20665	0.10	+0.4
4,456,859	+		DZA65_RS20665	0.10	-1.5
4,456,859	+		DZA65_RS20665	0.10	-0.0
4,456,860	-		DZA65_RS20665	0.10	-1.8
4,456,869	+		DZA65_RS20665	0.11	-0.5
4,456,870	-		DZA65_RS20665	0.11	-2.3
4,456,911	-		DZA65_RS20665	0.15	+0.7
4,456,911	-		DZA65_RS20665	0.15	-0.5
4,456,911	-		DZA65_RS20665	0.15	+0.1
4,456,911	-		DZA65_RS20665	0.15	-0.6
4,456,941	+		DZA65_RS20665	0.17	+1.0
4,456,941	+		DZA65_RS20665	0.17	-1.1
4,456,941	+		DZA65_RS20665	0.17	-0.8
4,456,942	-		DZA65_RS20665	0.17	-1.1
4,456,973	+		DZA65_RS20665	0.20	-2.2
4,456,973	+		DZA65_RS20665	0.20	-1.3
4,456,973	+		DZA65_RS20665	0.20	-0.9
4,456,973	+		DZA65_RS20665	0.20	-0.2
4,456,973	+		DZA65_RS20665	0.20	-0.2
4,456,973	+		DZA65_RS20665	0.20	+0.7
4,456,974	-		DZA65_RS20665	0.20	-0.1
4,456,974	-		DZA65_RS20665	0.20	+0.4
4,456,974	-		DZA65_RS20665	0.20	-3.0
4,456,974	-				+1.1
4,456,974	-		DZA65_RS20665	0.20	-0.3
4,457,054	+		DZA65_RS20665	0.26	-1.1
4,457,054	+		DZA65_RS20665	0.26	-0.3
4,457,055	-		DZA65_RS20665	0.27	-1.6
4,457,055	-		DZA65_RS20665	0.27	+1.7
4,457,139	+		DZA65_RS20665	0.33	-1.6
4,457,221	+		DZA65_RS20665	0.40	-1.5
4,457,221	+		DZA65_RS20665	0.40	-0.1
4,457,222	-		DZA65_RS20665	0.40	-0.5
4,457,222	-		DZA65_RS20665	0.40	-0.1
4,457,297	+		DZA65_RS20665	0.47	-0.2
4,457,298	-		DZA65_RS20665	0.47	-0.1
4,457,354	+		DZA65_RS20665	0.51	+0.1
4,457,354	+		DZA65_RS20665	0.51	-0.6
4,457,354	+		DZA65_RS20665	0.51	-0.1
4,457,355	-		DZA65_RS20665	0.51	+1.0