Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20640 and DZA65_RS20645 are separated by 17 nucleotides DZA65_RS20645 and DZA65_RS20650 are separated by 326 nucleotides
DZA65_RS20640: DZA65_RS20640 - phosphoribulokinase, at 4,452,240 to 4,453,109
_RS20640
DZA65_RS20645: DZA65_RS20645 - OsmC family protein, at 4,453,127 to 4,453,534
_RS20645
DZA65_RS20650: DZA65_RS20650 - cAMP-activated global transcriptional regulator CRP, at 4,453,861 to 4,454,493
_RS20650
Position (kb) 4453
4454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4452.131 kb on + strand at 4452.132 kb on - strand at 4452.154 kb on + strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.163 kb on + strand at 4452.196 kb on + strand at 4452.212 kb on + strand at 4452.212 kb on + strand at 4452.213 kb on - strand at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.378 kb on + strand at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.379 kb on - strand, within DZA65_RS20640 at 4452.380 kb on + strand at 4452.441 kb on + strand, within DZA65_RS20640 at 4452.442 kb on - strand, within DZA65_RS20640 at 4452.528 kb on + strand, within DZA65_RS20640 at 4452.528 kb on + strand, within DZA65_RS20640 at 4452.529 kb on - strand, within DZA65_RS20640 at 4452.541 kb on - strand, within DZA65_RS20640 at 4452.541 kb on - strand, within DZA65_RS20640 at 4452.558 kb on + strand, within DZA65_RS20640 at 4452.558 kb on + strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.625 kb on - strand, within DZA65_RS20640 at 4452.653 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.845 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.088 kb on - strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.101 kb on - strand at 4453.101 kb on - strand at 4453.101 kb on - strand at 4453.107 kb on + strand at 4453.160 kb on - strand at 4453.200 kb on + strand, within DZA65_RS20645 at 4453.201 kb on - strand, within DZA65_RS20645 at 4453.267 kb on + strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.534 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.578 kb on - strand at 4453.578 kb on - strand at 4453.578 kb on - strand at 4453.581 kb on + strand at 4453.582 kb on - strand at 4453.582 kb on - strand at 4453.582 kb on - strand at 4453.584 kb on - strand at 4453.584 kb on - strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.639 kb on + strand at 4453.639 kb on + strand at 4453.640 kb on - strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.741 kb on + strand at 4453.743 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.791 kb on + strand at 4453.791 kb on + strand at 4453.801 kb on + strand at 4453.801 kb on + strand at 4453.839 kb on + strand at 4454.495 kb on + strand at 4454.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,452,131 + -0.7 4,452,132 - -1.0 4,452,154 + -1.6 4,452,155 - -0.3 4,452,155 - +1.1 4,452,155 - -0.2 4,452,155 - -0.1 4,452,155 - +0.5 4,452,155 - -0.7 4,452,163 + -0.6 4,452,196 + +1.4 4,452,212 + -0.0 4,452,212 + -0.0 4,452,213 - -0.8 4,452,369 + DZA65_RS20640 0.15 -1.3 4,452,369 + DZA65_RS20640 0.15 +1.2 4,452,369 + DZA65_RS20640 0.15 -1.0 4,452,369 + DZA65_RS20640 0.15 +0.1 4,452,369 + DZA65_RS20640 0.15 -1.1 4,452,370 - DZA65_RS20640 0.15 -1.6 4,452,370 - DZA65_RS20640 0.15 -0.0 4,452,370 - DZA65_RS20640 0.15 -0.5 4,452,370 - DZA65_RS20640 0.15 -0.6 4,452,370 - DZA65_RS20640 0.15 -0.5 4,452,378 + DZA65_RS20640 0.16 +0.7 4,452,378 + DZA65_RS20640 0.16 +0.1 4,452,378 + -0.3 4,452,378 + DZA65_RS20640 0.16 +1.7 4,452,378 + DZA65_RS20640 0.16 +0.3 4,452,379 - DZA65_RS20640 0.16 -0.2 4,452,380 + +1.1 4,452,441 + DZA65_RS20640 0.23 -0.4 4,452,442 - DZA65_RS20640 0.23 +0.4 4,452,528 + DZA65_RS20640 0.33 -1.2 4,452,528 + DZA65_RS20640 0.33 -1.5 4,452,529 - DZA65_RS20640 0.33 -0.1 4,452,541 - DZA65_RS20640 0.35 -0.3 4,452,541 - DZA65_RS20640 0.35 +0.4 4,452,558 + DZA65_RS20640 0.37 -0.2 4,452,558 + DZA65_RS20640 0.37 +0.4 4,452,559 - DZA65_RS20640 0.37 -0.8 4,452,559 - DZA65_RS20640 0.37 -0.5 4,452,559 - DZA65_RS20640 0.37 -0.4 4,452,559 - DZA65_RS20640 0.37 -1.3 4,452,624 + DZA65_RS20640 0.44 +0.7 4,452,624 + DZA65_RS20640 0.44 -1.3 4,452,624 + DZA65_RS20640 0.44 +0.5 4,452,624 + DZA65_RS20640 0.44 -2.0 4,452,625 - DZA65_RS20640 0.44 -0.3 4,452,653 + DZA65_RS20640 0.47 +0.4 4,452,807 + DZA65_RS20640 0.65 -0.3 4,452,807 + DZA65_RS20640 0.65 -0.3 4,452,807 + DZA65_RS20640 0.65 -0.5 4,452,807 + DZA65_RS20640 0.65 -1.8 4,452,807 + DZA65_RS20640 0.65 +1.0 4,452,807 + DZA65_RS20640 0.65 +0.7 4,452,807 + DZA65_RS20640 0.65 -0.0 4,452,807 + DZA65_RS20640 0.65 -0.2 4,452,807 + DZA65_RS20640 0.65 -0.3 4,452,808 - DZA65_RS20640 0.65 -0.6 4,452,808 - DZA65_RS20640 0.65 +0.4 4,452,808 - DZA65_RS20640 0.65 +0.5 4,452,808 - DZA65_RS20640 0.65 +3.0 4,452,808 - DZA65_RS20640 0.65 -1.1 4,452,808 - DZA65_RS20640 0.65 -0.4 4,452,808 - DZA65_RS20640 0.65 +0.1 4,452,808 - DZA65_RS20640 0.65 -0.6 4,452,808 - DZA65_RS20640 0.65 +0.2 4,452,808 - DZA65_RS20640 0.65 +0.7 4,452,808 - DZA65_RS20640 0.65 -1.9 4,452,808 - DZA65_RS20640 0.65 -1.1 4,452,808 - DZA65_RS20640 0.65 -1.9 4,452,845 + DZA65_RS20640 0.70 -0.1 4,452,871 + DZA65_RS20640 0.73 -1.3 4,452,871 + DZA65_RS20640 0.73 -0.3 4,452,871 + DZA65_RS20640 0.73 -2.1 4,453,087 + -1.3 4,453,087 + -1.8 4,453,087 + +1.0 4,453,087 + +0.1 4,453,087 + -0.9 4,453,087 + +0.3 4,453,088 - +0.9 4,453,100 + +1.7 4,453,100 + +0.8 4,453,100 + -0.1 4,453,100 + +1.0 4,453,100 + +1.3 4,453,100 + +0.0 4,453,101 - +1.7 4,453,101 - -0.5 4,453,101 - -0.6 4,453,107 + -1.5 4,453,160 - -0.4 4,453,200 + DZA65_RS20645 0.18 +0.5 4,453,201 - DZA65_RS20645 0.18 -1.5 4,453,267 + DZA65_RS20645 0.34 +0.3 4,453,268 - DZA65_RS20645 0.35 -0.3 4,453,268 - DZA65_RS20645 0.35 -3.2 4,453,268 - DZA65_RS20645 0.35 -0.6 4,453,268 - DZA65_RS20645 0.35 -1.1 4,453,372 + DZA65_RS20645 0.60 -2.0 4,453,372 + DZA65_RS20645 0.60 -0.2 4,453,372 + DZA65_RS20645 0.60 -2.1 4,453,372 + DZA65_RS20645 0.60 -1.6 4,453,372 + DZA65_RS20645 0.60 +0.7 4,453,372 + DZA65_RS20645 0.60 +0.1 4,453,373 - DZA65_RS20645 0.60 -1.6 4,453,373 - DZA65_RS20645 0.60 -0.7 4,453,373 - DZA65_RS20645 0.60 -0.5 4,453,373 - DZA65_RS20645 0.60 +0.5 4,453,534 + -0.1 4,453,577 + -1.5 4,453,577 + -0.6 4,453,577 + -0.9 4,453,577 + +0.9 4,453,578 - +2.5 4,453,578 - -1.8 4,453,578 - -0.3 4,453,581 + -0.6 4,453,582 - -1.6 4,453,582 - +0.0 4,453,582 - -1.0 4,453,584 - -1.5 4,453,584 - -0.1 4,453,607 + -0.8 4,453,607 + -0.3 4,453,607 + -0.1 4,453,607 + -0.5 4,453,608 - -0.9 4,453,608 - +0.1 4,453,608 - -0.3 4,453,608 - -1.2 4,453,639 + -0.9 4,453,639 + -1.3 4,453,640 - -2.5 4,453,681 + -1.8 4,453,681 + -0.9 4,453,681 + -0.7 4,453,681 + +1.7 4,453,681 + -0.5 4,453,741 + +0.1 4,453,743 + -0.6 4,453,786 + -0.5 4,453,786 + -1.1 4,453,786 + +0.1 4,453,786 + -1.6 4,453,786 + -2.6 4,453,791 + -0.6 4,453,791 + -2.2 4,453,801 + -1.8 4,453,801 + -0.9 4,453,839 + +0.4 4,454,495 + -0.2 4,454,495 + -0.8
Or see this region's nucleotide sequence