Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19925

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,311,905	+		DZA65_RS19920	0.44	+0.7
4,311,906	-		DZA65_RS19920	0.44	+1.3
4,312,160	+		DZA65_RS19920	0.60	+2.0
4,312,160	+		DZA65_RS19920	0.60	-0.6
4,312,160	+		DZA65_RS19920	0.60	-0.3
4,312,160	+		DZA65_RS19920	0.60	-0.2
4,312,160	+		DZA65_RS19920	0.60	-0.1
4,312,160	+		DZA65_RS19920	0.60	-0.8
4,312,161	-		DZA65_RS19920	0.60	-0.9
4,312,161	-		DZA65_RS19920	0.60	-1.0
4,312,161	-		DZA65_RS19920	0.60	-0.5
4,312,408	+		DZA65_RS19920	0.76	+1.1
4,312,409	-		DZA65_RS19920	0.76	+0.1
4,312,414	+		DZA65_RS19920	0.76	-1.3
4,312,414	+		DZA65_RS19920	0.76	-0.5
4,312,415	-		DZA65_RS19920	0.77	+0.1
4,312,415	-		DZA65_RS19920	0.77	+0.2
4,312,415	-		DZA65_RS19920	0.77	-0.7
4,312,415	-		DZA65_RS19920	0.77	+0.1
4,312,422	-		DZA65_RS19920	0.77	-1.6
4,312,498	-		DZA65_RS19920	0.82	-0.1
4,312,603	+		DZA65_RS19920	0.88	-0.3
4,312,603	+		DZA65_RS19920	0.88	-0.2
4,312,604	-		DZA65_RS19920	0.89	-1.3
4,312,604	-		DZA65_RS19920	0.89	-1.0
4,312,604	-		DZA65_RS19920	0.89	+0.1
4,312,604	-		DZA65_RS19920	0.89	-0.6
4,312,628	+				-0.6
4,312,628	+				+2.1
4,312,629	-				+1.5
4,312,629	-				+0.8
4,312,724	+				+0.4
4,312,774	-				-0.4
4,312,821	-				-1.3
4,312,844	+				+0.1
4,312,844	+				+0.7
4,312,845	-				+0.9
4,312,944	-		DZA65_RS19925	0.10	+1.1
4,313,034	+		DZA65_RS19925	0.16	+0.7
4,313,034	+		DZA65_RS19925	0.16	+0.7
4,313,070	+		DZA65_RS19925	0.18	-0.9
4,313,070	+		DZA65_RS19925	0.18	+0.7
4,313,271	+		DZA65_RS19925	0.31	+1.0
4,313,271	+		DZA65_RS19925	0.31	-0.3
4,313,272	-		DZA65_RS19925	0.31	+0.1
4,313,272	-		DZA65_RS19925	0.31	-1.1
4,313,272	-		DZA65_RS19925	0.31	-1.1
4,313,272	-		DZA65_RS19925	0.31	-1.1
4,313,631	+		DZA65_RS19925	0.54	-0.6
4,313,631	+		DZA65_RS19925	0.54	+0.1
4,313,631	+		DZA65_RS19925	0.54	+0.5
4,313,632	-		DZA65_RS19925	0.54	-1.1
4,313,744	-		DZA65_RS19925	0.61	-0.9
4,313,744	-		DZA65_RS19925	0.61	+0.0
4,313,808	+		DZA65_RS19925	0.66	+0.1
4,313,808	+		DZA65_RS19925	0.66	-0.9
4,313,808	+		DZA65_RS19925	0.66	+0.6
4,313,808	+		DZA65_RS19925	0.66	+0.7
4,313,808	+		DZA65_RS19925	0.66	+1.3
4,313,808	+		DZA65_RS19925	0.66	-0.5
4,313,809	-		DZA65_RS19925	0.66	-1.6
4,313,809	-		DZA65_RS19925	0.66	+0.4
4,313,869	+		DZA65_RS19925	0.69	-0.5
4,313,869	+		DZA65_RS19925	0.69	-0.9
4,313,870	-		DZA65_RS19925	0.70	+0.5
4,313,870	-		DZA65_RS19925	0.70	+0.7
4,313,870	-		DZA65_RS19925	0.70	-0.2
4,313,870	-		DZA65_RS19925	0.70	+0.1
4,313,929	-		DZA65_RS19925	0.73	+0.1
4,313,961	+		DZA65_RS19925	0.75	+1.1
4,313,961	+		DZA65_RS19925	0.75	+1.4
4,313,961	+		DZA65_RS19925	0.75	+0.6
4,313,961	+		DZA65_RS19925	0.75	+0.2
4,313,961	+		DZA65_RS19925	0.75	+0.6
4,313,961	+		DZA65_RS19925	0.75	-1.8
4,313,961	+		DZA65_RS19925	0.75	-0.9
4,313,962	-		DZA65_RS19925	0.75	+1.1
4,313,962	-		DZA65_RS19925	0.75	+0.2
4,313,962	-		DZA65_RS19925	0.75	+1.7
4,313,962	-		DZA65_RS19925	0.75	-1.7
4,313,962	-		DZA65_RS19925	0.75	-0.9
4,313,962	-		DZA65_RS19925	0.75	+0.9
4,313,998	+		DZA65_RS19925	0.78	-0.3
4,313,998	+		DZA65_RS19925	0.78	-0.7
4,313,998	+		DZA65_RS19925	0.78	-0.2
4,313,998	+		DZA65_RS19925	0.78	+0.1
4,313,998	+		DZA65_RS19925	0.78	-0.3
4,313,999	-		DZA65_RS19925	0.78	-1.1
4,314,005	+		DZA65_RS19925	0.78	-0.9
4,314,018	+		DZA65_RS19925	0.79	+0.1
4,314,018	+		DZA65_RS19925	0.79	-0.5
4,314,018	+		DZA65_RS19925	0.79	-0.1
4,314,019	-		DZA65_RS19925	0.79	+0.3
4,314,099	+		DZA65_RS19925	0.84	-0.1
4,314,100	-		DZA65_RS19925	0.84	+1.7
4,314,100	-		DZA65_RS19925	0.84	-1.6
4,314,100	-		DZA65_RS19925	0.84	-0.8
4,314,100	-				+0.1
4,314,202	-				+0.7
4,314,202	-				+1.7
4,314,202	-				-0.3
4,314,236	-				-0.3
4,314,346	+				-0.3
4,314,346	+				+0.3
4,314,346	+				+0.7
4,314,346	+				-0.2
4,314,346	+				+0.5
4,314,346	+				-1.6
4,314,346	+				+0.2
4,314,346	+				+1.4
4,314,346	+				-1.9
4,314,346	+				+0.1
4,314,346	+				-1.1
4,314,347	-				+0.2
4,314,347	-				-0.3
4,314,347	-				-2.3
4,314,347	-				+0.1
4,314,347	-				+0.4
4,314,347	-				+2.3
4,314,347	-				-0.9
4,314,347	-				+0.7
4,314,347	-				+0.9
4,314,347	-				-0.3
4,314,347	-				-1.2
4,314,347	-				-1.3
4,314,347	-				+0.0
4,314,432	-				+0.7
4,314,473	-				-0.2
4,314,587	+				+0.2
4,314,588	-				-0.1
4,314,588	-				+0.7
4,314,670	-				-0.6
4,314,675	+				-0.1
4,314,675	+				-0.8
4,314,675	+				+0.6
4,314,675	+				-1.1
4,314,676	-				+0.1
4,314,676	-				-0.0
4,314,679	+				-0.6
4,314,679	+				-0.6
4,314,680	-				+0.7
4,314,769	+				+0.7
4,314,769	+				-0.2
4,314,769	+				+0.5
4,314,770	-				-0.9
4,314,770	-				+0.7
4,314,770	-				-0.6
4,314,770	-				+1.0
4,314,770	-				-0.9
4,314,770	-				+0.7
4,314,779	+				+0.2
4,314,838	+				-2.6
4,314,838	+				-1.7
4,315,125	+		DZA65_RS19935	0.64	-1.1
4,315,125	+		DZA65_RS19935	0.64	-0.6
4,315,126	-		DZA65_RS19935	0.64	-1.9
4,315,126	-		DZA65_RS19935	0.64	+0.5
4,315,132	+		DZA65_RS19935	0.65	+0.8
4,315,132	+		DZA65_RS19935	0.65	-2.4
4,315,132	+		DZA65_RS19935	0.65	-0.2
4,315,132	+		DZA65_RS19935	0.65	-1.0
4,315,132	+		DZA65_RS19935	0.65	-1.0
4,315,133	-		DZA65_RS19935	0.65	+0.5
4,315,133	-		DZA65_RS19935	0.65	+1.3
4,315,133	-		DZA65_RS19935	0.65	-1.1
4,315,133	-		DZA65_RS19935	0.65	+1.4
4,315,133	-		DZA65_RS19935	0.65	-0.4
4,315,133	-		DZA65_RS19935	0.65	+0.1
4,315,133	-		DZA65_RS19935	0.65	-2.1
4,315,133	-		DZA65_RS19935	0.65	-0.6
4,315,133	-		DZA65_RS19935	0.65	-2.6
4,315,133	-		DZA65_RS19935	0.65	+1.2
4,315,314	+				-0.8
4,315,315	-				-0.7
4,315,340	-				-0.5