Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19335

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19330 and DZA65_RS19335 overlap by 1 nucleotidesDZA65_RS19335 and DZA65_RS19340 overlap by 8 nucleotidesDZA65_RS19340 and DZA65_RS19345 are separated by 15 nucleotides DZA65_RS19330: DZA65_RS19330 - peptidylprolyl isomerase SurA, at 4,181,571 to 4,182,863 _RS19330 DZA65_RS19335: DZA65_RS19335 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,182,863 to 4,183,864 _RS19335 DZA65_RS19340: DZA65_RS19340 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,183,857 to 4,184,675 _RS19340 DZA65_RS19345: DZA65_RS19345 - Co2+/Mg2+ efflux protein ApaG, at 4,184,691 to 4,185,068 _RS19345 Position (kb) 4182 4183 4184Strain fitness (log2 ratio) -2 -1 0 1at 4182.871 kb on + strandat 4183.157 kb on + strand, within DZA65_RS19335at 4183.233 kb on + strand, within DZA65_RS19335at 4183.246 kb on + strand, within DZA65_RS19335at 4183.261 kb on + strand, within DZA65_RS19335at 4183.261 kb on + strand, within DZA65_RS19335at 4183.261 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.653 kb on + strand, within DZA65_RS19335at 4183.664 kb on + strand, within DZA65_RS19335at 4183.664 kb on + strand, within DZA65_RS19335at 4183.664 kb on + strand, within DZA65_RS19335at 4184.673 kb on + strandat 4184.673 kb on + strandat 4184.674 kb on - strandat 4184.716 kb on + strandat 4184.716 kb on + strandat 4184.717 kb on - strandat 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.733 kb on + strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.734 kb on - strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.737 kb on + strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.738 kb on - strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.781 kb on + strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.782 kb on - strand, within DZA65_RS19345at 4184.783 kb on + strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.784 kb on - strand, within DZA65_RS19345at 4184.842 kb on + strand, within DZA65_RS19345at 4184.843 kb on - strand, within DZA65_RS19345at 4184.843 kb on - strand, within DZA65_RS19345at 4184.843 kb on - strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.846 kb on + strand, within DZA65_RS19345at 4184.847 kb on - strand, within DZA65_RS19345at 4184.847 kb on - strand, within DZA65_RS19345at 4184.847 kb on - strand, within DZA65_RS19345

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,182,871 + -0.3
4,183,157 + DZA65_RS19335 0.29 -1.3
4,183,233 + DZA65_RS19335 0.37 -0.6
4,183,246 + DZA65_RS19335 0.38 -0.5
4,183,261 + DZA65_RS19335 0.40 -1.3
4,183,261 + DZA65_RS19335 0.40 -0.8
4,183,261 + DZA65_RS19335 0.40 -0.3
4,183,481 + DZA65_RS19335 0.62 -1.9
4,183,481 + DZA65_RS19335 0.62 +0.7
4,183,481 + DZA65_RS19335 0.62 -0.2
4,183,481 + DZA65_RS19335 0.62 -1.5
4,183,481 + DZA65_RS19335 0.62 +0.1
4,183,481 + DZA65_RS19335 0.62 -0.9
4,183,481 + DZA65_RS19335 0.62 -1.0
4,183,631 + DZA65_RS19335 0.77 -1.5
4,183,631 + DZA65_RS19335 0.77 -0.2
4,183,631 + DZA65_RS19335 0.77 -1.2
4,183,631 + DZA65_RS19335 0.77 -1.3
4,183,653 + DZA65_RS19335 0.79 -0.9
4,183,664 + DZA65_RS19335 0.80 -2.2
4,183,664 + DZA65_RS19335 0.80 -1.4
4,183,664 + DZA65_RS19335 0.80 -1.3
4,184,673 + -1.3
4,184,673 + -1.8
4,184,674 - +0.3
4,184,716 + -1.8
4,184,716 + -0.3
4,184,717 - -1.3
4,184,733 + DZA65_RS19345 0.11 -0.7
4,184,733 + DZA65_RS19345 0.11 -0.9
4,184,733 + DZA65_RS19345 0.11 -0.1
4,184,733 + DZA65_RS19345 0.11 -0.4
4,184,733 + DZA65_RS19345 0.11 -1.8
4,184,733 + DZA65_RS19345 0.11 -0.2
4,184,733 + DZA65_RS19345 0.11 -0.3
4,184,733 + DZA65_RS19345 0.11 +0.2
4,184,733 + DZA65_RS19345 0.11 -1.4
4,184,733 + DZA65_RS19345 0.11 -0.1
4,184,733 + DZA65_RS19345 0.11 -1.7
4,184,733 + DZA65_RS19345 0.11 -0.9
4,184,733 + DZA65_RS19345 0.11 -0.7
4,184,733 + DZA65_RS19345 0.11 +0.1
4,184,733 + DZA65_RS19345 0.11 -0.3
4,184,733 + DZA65_RS19345 0.11 +0.1
4,184,733 + DZA65_RS19345 0.11 +1.7
4,184,733 + DZA65_RS19345 0.11 -0.2
4,184,734 - DZA65_RS19345 0.11 -1.7
4,184,734 - DZA65_RS19345 0.11 -0.9
4,184,734 - DZA65_RS19345 0.11 -2.2
4,184,734 - DZA65_RS19345 0.11 -0.7
4,184,734 - DZA65_RS19345 0.11 -0.6
4,184,734 - DZA65_RS19345 0.11 -1.3
4,184,734 - DZA65_RS19345 0.11 -1.2
4,184,734 - DZA65_RS19345 0.11 -0.1
4,184,734 - DZA65_RS19345 0.11 -2.6
4,184,734 - DZA65_RS19345 0.11 -0.3
4,184,734 - DZA65_RS19345 0.11 -1.2
4,184,734 - DZA65_RS19345 0.11 -0.5
4,184,737 + DZA65_RS19345 0.12 -0.3
4,184,737 + DZA65_RS19345 0.12 -1.7
4,184,737 + DZA65_RS19345 0.12 +0.7
4,184,737 + DZA65_RS19345 0.12 -0.7
4,184,737 + DZA65_RS19345 0.12 -0.0
4,184,737 + DZA65_RS19345 0.12 -1.8
4,184,737 + DZA65_RS19345 0.12 -0.8
4,184,737 + DZA65_RS19345 0.12 -1.0
4,184,737 + DZA65_RS19345 0.12 -1.3
4,184,738 - DZA65_RS19345 0.12 -1.4
4,184,738 - DZA65_RS19345 0.12 -1.3
4,184,738 - DZA65_RS19345 0.12 +0.1
4,184,738 - DZA65_RS19345 0.12 -0.9
4,184,738 - DZA65_RS19345 0.12 -0.7
4,184,738 - DZA65_RS19345 0.12 -0.2
4,184,781 + DZA65_RS19345 0.24 -1.3
4,184,781 + DZA65_RS19345 0.24 +1.7
4,184,781 + DZA65_RS19345 0.24 -1.5
4,184,781 + DZA65_RS19345 0.24 +0.6
4,184,781 + DZA65_RS19345 0.24 -2.2
4,184,781 + DZA65_RS19345 0.24 -0.9
4,184,781 + DZA65_RS19345 0.24 -2.4
4,184,781 + DZA65_RS19345 0.24 -0.2
4,184,782 - DZA65_RS19345 0.24 +1.3
4,184,782 - DZA65_RS19345 0.24 -0.3
4,184,782 - DZA65_RS19345 0.24 -0.9
4,184,782 - DZA65_RS19345 0.24 -0.9
4,184,782 - DZA65_RS19345 0.24 -0.3
4,184,783 + DZA65_RS19345 0.24 +0.1
4,184,784 - DZA65_RS19345 0.25 -1.3
4,184,784 - DZA65_RS19345 0.25 -0.3
4,184,784 - DZA65_RS19345 0.25 -2.1
4,184,784 - DZA65_RS19345 0.25 -1.5
4,184,784 - DZA65_RS19345 0.25 -0.3
4,184,842 + DZA65_RS19345 0.40 +0.2
4,184,843 - DZA65_RS19345 0.40 -2.3
4,184,843 - DZA65_RS19345 0.40 -1.7
4,184,843 - DZA65_RS19345 0.40 +0.7
4,184,846 + DZA65_RS19345 0.41 +0.9
4,184,846 + DZA65_RS19345 0.41 +0.2
4,184,846 + DZA65_RS19345 0.41 -0.9
4,184,846 + DZA65_RS19345 0.41 -0.3
4,184,846 + DZA65_RS19345 0.41 +1.4
4,184,846 + DZA65_RS19345 0.41 -0.1
4,184,847 - DZA65_RS19345 0.41 +0.5
4,184,847 - DZA65_RS19345 0.41 -0.5
4,184,847 - DZA65_RS19345 0.41 +0.4

Or see this region's nucleotide sequence