Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19330

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19325 and DZA65_RS19330 are separated by 98 nucleotidesDZA65_RS19330 and DZA65_RS19335 overlap by 1 nucleotidesDZA65_RS19335 and DZA65_RS19340 overlap by 8 nucleotides DZA65_RS19325: DZA65_RS19325 - LPS assembly protein LptD, at 4,179,097 to 4,181,472 _RS19325 DZA65_RS19330: DZA65_RS19330 - peptidylprolyl isomerase SurA, at 4,181,571 to 4,182,863 _RS19330 DZA65_RS19335: DZA65_RS19335 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,182,863 to 4,183,864 _RS19335 DZA65_RS19340: DZA65_RS19340 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,183,857 to 4,184,675 _RS19340 Position (kb) 4181 4182 4183Strain fitness (log2 ratio) -2 -1 0 1at 4181.410 kb on + strandat 4181.410 kb on + strandat 4181.411 kb on - strandat 4181.411 kb on - strandat 4181.411 kb on - strandat 4181.411 kb on - strandat 4181.411 kb on - strandat 4181.478 kb on + strandat 4181.478 kb on + strandat 4181.478 kb on + strandat 4181.478 kb on + strandat 4181.478 kb on + strandat 4181.478 kb on + strandat 4181.478 kb on + strandat 4181.479 kb on - strandat 4181.479 kb on - strandat 4181.479 kb on - strandat 4181.479 kb on - strandat 4181.479 kb on - strandat 4181.479 kb on - strandat 4181.502 kb on + strandat 4181.510 kb on + strandat 4181.527 kb on + strandat 4181.527 kb on + strandat 4181.535 kb on + strandat 4181.570 kb on + strandat 4182.871 kb on + strandat 4183.157 kb on + strand, within DZA65_RS19335at 4183.233 kb on + strand, within DZA65_RS19335at 4183.246 kb on + strand, within DZA65_RS19335at 4183.261 kb on + strand, within DZA65_RS19335at 4183.261 kb on + strand, within DZA65_RS19335at 4183.261 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.481 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.631 kb on + strand, within DZA65_RS19335at 4183.653 kb on + strand, within DZA65_RS19335at 4183.664 kb on + strand, within DZA65_RS19335at 4183.664 kb on + strand, within DZA65_RS19335at 4183.664 kb on + strand, within DZA65_RS19335

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,181,410 + -0.5
4,181,410 + -0.9
4,181,411 - -1.0
4,181,411 - -0.3
4,181,411 - -1.3
4,181,411 - +0.1
4,181,411 - +0.7
4,181,478 + -1.2
4,181,478 + -0.8
4,181,478 + -0.9
4,181,478 + +0.4
4,181,478 + -1.2
4,181,478 + -0.7
4,181,478 + -0.0
4,181,479 - -1.7
4,181,479 - -0.3
4,181,479 - -1.3
4,181,479 - -1.5
4,181,479 - -0.3
4,181,479 - -1.3
4,181,502 + +0.5
4,181,510 + -0.9
4,181,527 + -1.2
4,181,527 + -1.1
4,181,535 + +0.2
4,181,570 + +0.3
4,182,871 + -0.3
4,183,157 + DZA65_RS19335 0.29 -1.3
4,183,233 + DZA65_RS19335 0.37 -0.6
4,183,246 + DZA65_RS19335 0.38 -0.5
4,183,261 + DZA65_RS19335 0.40 -1.3
4,183,261 + DZA65_RS19335 0.40 -0.8
4,183,261 + DZA65_RS19335 0.40 -0.3
4,183,481 + DZA65_RS19335 0.62 -1.9
4,183,481 + DZA65_RS19335 0.62 +0.7
4,183,481 + DZA65_RS19335 0.62 -0.2
4,183,481 + DZA65_RS19335 0.62 -1.5
4,183,481 + DZA65_RS19335 0.62 +0.1
4,183,481 + DZA65_RS19335 0.62 -0.9
4,183,481 + DZA65_RS19335 0.62 -1.0
4,183,631 + DZA65_RS19335 0.77 -1.5
4,183,631 + DZA65_RS19335 0.77 -0.2
4,183,631 + DZA65_RS19335 0.77 -1.2
4,183,631 + DZA65_RS19335 0.77 -1.3
4,183,653 + DZA65_RS19335 0.79 -0.9
4,183,664 + DZA65_RS19335 0.80 -2.2
4,183,664 + DZA65_RS19335 0.80 -1.4
4,183,664 + DZA65_RS19335 0.80 -1.3

Or see this region's nucleotide sequence