Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19325 and DZA65_RS19330 are separated by 98 nucleotides DZA65_RS19330 and DZA65_RS19335 overlap by 1 nucleotides DZA65_RS19335 and DZA65_RS19340 overlap by 8 nucleotides
DZA65_RS19325: DZA65_RS19325 - LPS assembly protein LptD, at 4,179,097 to 4,181,472
_RS19325
DZA65_RS19330: DZA65_RS19330 - peptidylprolyl isomerase SurA, at 4,181,571 to 4,182,863
_RS19330
DZA65_RS19335: DZA65_RS19335 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,182,863 to 4,183,864
_RS19335
DZA65_RS19340: DZA65_RS19340 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 4,183,857 to 4,184,675
_RS19340
Position (kb)
4181
4182
4183 Strain fitness (log2 ratio)
-2
-1
0
1 at 4181.410 kb on + strand at 4181.410 kb on + strand at 4181.411 kb on - strand at 4181.411 kb on - strand at 4181.411 kb on - strand at 4181.411 kb on - strand at 4181.411 kb on - strand at 4181.478 kb on + strand at 4181.478 kb on + strand at 4181.478 kb on + strand at 4181.478 kb on + strand at 4181.478 kb on + strand at 4181.478 kb on + strand at 4181.478 kb on + strand at 4181.479 kb on - strand at 4181.479 kb on - strand at 4181.479 kb on - strand at 4181.479 kb on - strand at 4181.479 kb on - strand at 4181.479 kb on - strand at 4181.502 kb on + strand at 4181.510 kb on + strand at 4181.527 kb on + strand at 4181.527 kb on + strand at 4181.535 kb on + strand at 4181.570 kb on + strand at 4182.871 kb on + strand at 4183.157 kb on + strand, within DZA65_RS19335 at 4183.233 kb on + strand, within DZA65_RS19335 at 4183.246 kb on + strand, within DZA65_RS19335 at 4183.261 kb on + strand, within DZA65_RS19335 at 4183.261 kb on + strand, within DZA65_RS19335 at 4183.261 kb on + strand, within DZA65_RS19335 at 4183.481 kb on + strand, within DZA65_RS19335 at 4183.481 kb on + strand, within DZA65_RS19335 at 4183.481 kb on + strand, within DZA65_RS19335 at 4183.481 kb on + strand, within DZA65_RS19335 at 4183.481 kb on + strand, within DZA65_RS19335 at 4183.481 kb on + strand, within DZA65_RS19335 at 4183.481 kb on + strand, within DZA65_RS19335 at 4183.631 kb on + strand, within DZA65_RS19335 at 4183.631 kb on + strand, within DZA65_RS19335 at 4183.631 kb on + strand, within DZA65_RS19335 at 4183.631 kb on + strand, within DZA65_RS19335 at 4183.653 kb on + strand, within DZA65_RS19335 at 4183.664 kb on + strand, within DZA65_RS19335 at 4183.664 kb on + strand, within DZA65_RS19335 at 4183.664 kb on + strand, within DZA65_RS19335
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,181,410 + -0.5 4,181,410 + -0.9 4,181,411 - -1.0 4,181,411 - -0.3 4,181,411 - -1.3 4,181,411 - +0.1 4,181,411 - +0.7 4,181,478 + -1.2 4,181,478 + -0.8 4,181,478 + -0.9 4,181,478 + +0.4 4,181,478 + -1.2 4,181,478 + -0.7 4,181,478 + -0.0 4,181,479 - -1.7 4,181,479 - -0.3 4,181,479 - -1.3 4,181,479 - -1.5 4,181,479 - -0.3 4,181,479 - -1.3 4,181,502 + +0.5 4,181,510 + -0.9 4,181,527 + -1.2 4,181,527 + -1.1 4,181,535 + +0.2 4,181,570 + +0.3 4,182,871 + -0.3 4,183,157 + DZA65_RS19335 0.29 -1.3 4,183,233 + DZA65_RS19335 0.37 -0.6 4,183,246 + DZA65_RS19335 0.38 -0.5 4,183,261 + DZA65_RS19335 0.40 -1.3 4,183,261 + DZA65_RS19335 0.40 -0.8 4,183,261 + DZA65_RS19335 0.40 -0.3 4,183,481 + DZA65_RS19335 0.62 -1.9 4,183,481 + DZA65_RS19335 0.62 +0.7 4,183,481 + DZA65_RS19335 0.62 -0.2 4,183,481 + DZA65_RS19335 0.62 -1.5 4,183,481 + DZA65_RS19335 0.62 +0.1 4,183,481 + DZA65_RS19335 0.62 -0.9 4,183,481 + DZA65_RS19335 0.62 -1.0 4,183,631 + DZA65_RS19335 0.77 -1.5 4,183,631 + DZA65_RS19335 0.77 -0.2 4,183,631 + DZA65_RS19335 0.77 -1.2 4,183,631 + DZA65_RS19335 0.77 -1.3 4,183,653 + DZA65_RS19335 0.79 -0.9 4,183,664 + DZA65_RS19335 0.80 -2.2 4,183,664 + DZA65_RS19335 0.80 -1.4 4,183,664 + DZA65_RS19335 0.80 -1.3
Or see this region's nucleotide sequence