Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19310 and DZA65_RS19315 are separated by 64 nucleotides DZA65_RS19315 and DZA65_RS19320 are separated by 64 nucleotides DZA65_RS19320 and DZA65_RS19325 are separated by 186 nucleotides
DZA65_RS19310: DZA65_RS19310 - RNA polymerase-associated protein RapA, at 4,174,136 to 4,177,081
_RS19310
DZA65_RS19315: DZA65_RS19315 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 4,177,146 to 4,177,799
_RS19315
DZA65_RS19320: DZA65_RS19320 - co-chaperone DjlA, at 4,177,864 to 4,178,910
_RS19320
DZA65_RS19325: DZA65_RS19325 - LPS assembly protein LptD, at 4,179,097 to 4,181,472
_RS19325
Position (kb) 4177
4178
4179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4177.079 kb on + strand at 4177.080 kb on - strand at 4177.080 kb on - strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.097 kb on + strand at 4177.098 kb on - strand at 4177.098 kb on - strand at 4177.100 kb on + strand at 4177.100 kb on + strand at 4177.100 kb on + strand at 4177.101 kb on - strand at 4177.101 kb on - strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.155 kb on + strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.156 kb on - strand at 4177.181 kb on - strand at 4177.191 kb on + strand at 4177.191 kb on + strand at 4177.425 kb on + strand, within DZA65_RS19315 at 4177.471 kb on + strand, within DZA65_RS19315 at 4177.471 kb on + strand, within DZA65_RS19315 at 4177.472 kb on - strand, within DZA65_RS19315 at 4177.472 kb on - strand, within DZA65_RS19315 at 4177.556 kb on + strand, within DZA65_RS19315 at 4177.557 kb on - strand, within DZA65_RS19315 at 4177.557 kb on - strand, within DZA65_RS19315 at 4177.557 kb on - strand, within DZA65_RS19315 at 4177.630 kb on + strand, within DZA65_RS19315 at 4177.681 kb on - strand, within DZA65_RS19315 at 4177.681 kb on - strand, within DZA65_RS19315 at 4177.761 kb on - strand at 4177.887 kb on + strand at 4177.923 kb on + strand at 4177.923 kb on + strand at 4177.923 kb on + strand at 4177.924 kb on - strand at 4177.955 kb on - strand at 4178.001 kb on + strand, within DZA65_RS19320 at 4178.002 kb on - strand, within DZA65_RS19320 at 4178.002 kb on - strand, within DZA65_RS19320 at 4178.006 kb on + strand, within DZA65_RS19320 at 4178.112 kb on - strand, within DZA65_RS19320 at 4178.147 kb on + strand, within DZA65_RS19320 at 4178.148 kb on - strand, within DZA65_RS19320 at 4178.222 kb on + strand, within DZA65_RS19320 at 4178.222 kb on + strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.223 kb on - strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.318 kb on + strand, within DZA65_RS19320 at 4178.319 kb on - strand, within DZA65_RS19320 at 4178.319 kb on - strand, within DZA65_RS19320 at 4178.319 kb on - strand, within DZA65_RS19320 at 4178.386 kb on - strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.444 kb on + strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.445 kb on - strand, within DZA65_RS19320 at 4178.497 kb on + strand, within DZA65_RS19320 at 4178.541 kb on + strand, within DZA65_RS19320 at 4178.541 kb on + strand, within DZA65_RS19320 at 4178.910 kb on + strand at 4178.910 kb on + strand at 4178.911 kb on - strand at 4178.911 kb on - strand at 4178.911 kb on - strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.912 kb on + strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.913 kb on - strand at 4178.951 kb on + strand at 4178.951 kb on + strand at 4178.951 kb on + strand at 4178.952 kb on - strand at 4178.952 kb on - strand at 4178.967 kb on + strand at 4178.967 kb on + strand at 4178.967 kb on + strand at 4178.968 kb on - strand at 4178.968 kb on - strand at 4178.968 kb on - strand at 4178.980 kb on - strand at 4178.992 kb on + strand at 4179.037 kb on + strand at 4179.037 kb on + strand at 4179.037 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand at 4179.039 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,177,079 + -0.0 4,177,080 - -0.0 4,177,080 - +0.7 4,177,097 + +1.1 4,177,097 + +0.9 4,177,097 + -0.0 4,177,097 + +0.1 4,177,097 + -0.3 4,177,098 - +0.2 4,177,098 - -2.0 4,177,100 + +0.6 4,177,100 + -1.0 4,177,100 + +0.1 4,177,101 - -0.7 4,177,101 - -1.3 4,177,155 + -1.5 4,177,155 + +1.7 4,177,155 + -0.3 4,177,155 + -0.5 4,177,155 + +1.1 4,177,155 + -0.6 4,177,156 - -1.8 4,177,156 - +0.4 4,177,156 - -1.8 4,177,156 - -0.1 4,177,156 - +1.9 4,177,156 - -0.7 4,177,156 - -0.1 4,177,156 - +0.4 4,177,181 - +0.2 4,177,191 + -1.5 4,177,191 + +0.7 4,177,425 + DZA65_RS19315 0.43 -1.1 4,177,471 + DZA65_RS19315 0.50 -0.5 4,177,471 + DZA65_RS19315 0.50 -0.6 4,177,472 - DZA65_RS19315 0.50 -1.3 4,177,472 - DZA65_RS19315 0.50 -0.2 4,177,556 + DZA65_RS19315 0.63 -0.5 4,177,557 - DZA65_RS19315 0.63 +0.2 4,177,557 - DZA65_RS19315 0.63 -0.2 4,177,557 - DZA65_RS19315 0.63 -0.5 4,177,630 + DZA65_RS19315 0.74 -0.2 4,177,681 - DZA65_RS19315 0.82 -0.0 4,177,681 - DZA65_RS19315 0.82 -0.3 4,177,761 - -0.1 4,177,887 + +0.7 4,177,923 + +0.3 4,177,923 + +0.7 4,177,923 + -1.2 4,177,924 - -0.8 4,177,955 - +0.5 4,178,001 + DZA65_RS19320 0.13 +0.9 4,178,002 - DZA65_RS19320 0.13 +0.2 4,178,002 - DZA65_RS19320 0.13 -0.3 4,178,006 + DZA65_RS19320 0.14 -1.2 4,178,112 - DZA65_RS19320 0.24 -0.5 4,178,147 + DZA65_RS19320 0.27 -1.9 4,178,148 - DZA65_RS19320 0.27 +0.7 4,178,222 + DZA65_RS19320 0.34 -1.3 4,178,222 + DZA65_RS19320 0.34 -1.0 4,178,223 - DZA65_RS19320 0.34 +0.1 4,178,223 - DZA65_RS19320 0.34 +0.2 4,178,223 - DZA65_RS19320 0.34 -1.4 4,178,223 - DZA65_RS19320 0.34 -1.2 4,178,223 - DZA65_RS19320 0.34 -1.0 4,178,223 - DZA65_RS19320 0.34 -1.8 4,178,318 + DZA65_RS19320 0.43 +0.3 4,178,318 + DZA65_RS19320 0.43 +0.7 4,178,318 + DZA65_RS19320 0.43 +0.5 4,178,318 + DZA65_RS19320 0.43 -0.9 4,178,319 - DZA65_RS19320 0.43 +0.1 4,178,319 - DZA65_RS19320 0.43 +0.3 4,178,319 - DZA65_RS19320 0.43 +0.1 4,178,386 - DZA65_RS19320 0.50 -0.0 4,178,444 + DZA65_RS19320 0.55 -1.7 4,178,444 + DZA65_RS19320 0.55 -0.3 4,178,444 + DZA65_RS19320 0.55 +1.1 4,178,444 + DZA65_RS19320 0.55 -1.9 4,178,444 + DZA65_RS19320 0.55 -2.0 4,178,444 + DZA65_RS19320 0.55 -1.2 4,178,444 + DZA65_RS19320 0.55 -0.9 4,178,445 - DZA65_RS19320 0.55 -0.9 4,178,445 - DZA65_RS19320 0.55 -1.7 4,178,445 - DZA65_RS19320 0.55 +0.7 4,178,445 - DZA65_RS19320 0.55 -0.2 4,178,497 + DZA65_RS19320 0.60 -1.5 4,178,541 + DZA65_RS19320 0.65 +0.1 4,178,541 + DZA65_RS19320 0.65 -0.2 4,178,910 + -0.8 4,178,910 + +0.1 4,178,911 - -0.1 4,178,911 - -1.2 4,178,911 - +0.7 4,178,912 + +1.1 4,178,912 + +0.7 4,178,912 + -0.9 4,178,912 + +0.1 4,178,912 + +0.1 4,178,912 + +2.0 4,178,912 + +0.7 4,178,912 + +2.1 4,178,912 + -2.3 4,178,913 - +0.9 4,178,913 - +0.1 4,178,913 - -0.7 4,178,913 - -0.8 4,178,913 - -1.0 4,178,913 - +0.1 4,178,913 - +0.4 4,178,913 - -1.2 4,178,913 - -0.3 4,178,913 - -0.1 4,178,913 - -0.9 4,178,913 - -0.3 4,178,913 - -0.9 4,178,913 - -0.3 4,178,913 - +0.1 4,178,913 - +0.6 4,178,913 - +1.1 4,178,913 - -0.3 4,178,913 - -1.9 4,178,913 - -0.7 4,178,951 + +0.3 4,178,951 + -2.0 4,178,951 + -0.9 4,178,952 - +0.9 4,178,952 - +0.1 4,178,967 + -1.5 4,178,967 + -0.7 4,178,967 + -1.3 4,178,968 - -0.3 4,178,968 - -0.1 4,178,968 - +0.2 4,178,980 - +0.1 4,178,992 + -0.2 4,179,037 + -0.5 4,179,037 + -0.9 4,179,037 + -1.5 4,179,039 + -1.2 4,179,039 + -1.0 4,179,039 + +0.1 4,179,039 + +0.2 4,179,039 + -0.7 4,179,039 + -1.0 4,179,039 + -0.2
Or see this region's nucleotide sequence