Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18765

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
4,045,857	-	DZA65_RS18755	0.78	+0.5
4,046,002	-			-0.7
4,046,076	-			+0.1
4,046,175	-			+0.6
4,046,229	+			-1.2
4,046,230	-			-0.8
4,046,267	-			+0.8
4,046,291	-			-0.7
4,046,330	+	DZA65_RS18760	0.14	+0.3
4,046,331	-	DZA65_RS18760	0.15	-0.4
4,046,393	+	DZA65_RS18760	0.25	-0.9
4,046,406	+	DZA65_RS18760	0.27	+0.5
4,046,483	+	DZA65_RS18760	0.40	+0.1
4,046,485	+	DZA65_RS18760	0.41	+0.4
4,046,485	+	DZA65_RS18760	0.41	-1.9
4,046,486	-	DZA65_RS18760	0.41	-0.8
4,046,486	-	DZA65_RS18760	0.41	-0.4
4,046,486	-	DZA65_RS18760	0.41	-0.3
4,046,486	-	DZA65_RS18760	0.41	+0.4
4,046,486	-	DZA65_RS18760	0.41	+0.9
4,046,486	-	DZA65_RS18760	0.41	-1.2
4,046,499	+	DZA65_RS18760	0.43	-0.2
4,046,499	+	DZA65_RS18760	0.43	-1.2
4,046,500	-	DZA65_RS18760	0.43	-1.8
4,046,533	+	DZA65_RS18760	0.49	-2.8
4,046,534	-	DZA65_RS18760	0.49	-0.4
4,046,534	-	DZA65_RS18760	0.49	-1.2
4,046,547	-	DZA65_RS18760	0.51	+0.4
4,046,581	-	DZA65_RS18760	0.57	+1.2
4,046,604	+	DZA65_RS18760	0.61	+1.0
4,046,639	+	DZA65_RS18760	0.67	-1.9
4,046,639	+	DZA65_RS18760	0.67	-2.2
4,046,646	-	DZA65_RS18760	0.68	-1.2
4,046,683	-	DZA65_RS18760	0.74	-0.6
4,046,683	-	DZA65_RS18760	0.74	-0.4
4,046,707	+	DZA65_RS18760	0.79	-0.9
4,046,723	+	DZA65_RS18760	0.81	+0.6
4,046,723	+	DZA65_RS18760	0.81	-0.8
4,046,724	-	DZA65_RS18760	0.81	+0.1
4,046,724	-	DZA65_RS18760	0.81	-0.6
4,046,724	-	DZA65_RS18760	0.81	+0.1
4,046,725	+	DZA65_RS18760	0.82	+0.1
4,046,796	+			+0.6
4,046,796	+			-0.9
4,046,797	-			+0.1
4,046,797	-			+1.2
4,046,797	-			-0.5
4,046,797	-			-0.3
4,046,797	-			-1.7
4,046,815	+			-0.5
4,046,815	+			-0.8
4,046,816	-			+0.6
4,046,816	-			-1.1
4,046,816	-			+0.6
4,046,849	-			-0.8
4,046,871	+			+0.4
4,046,914	+			-1.4
4,046,914	+			-0.2
4,046,914	+			-0.5
4,046,915	-			-0.1
4,046,915	-			-0.7
4,046,970	+	DZA65_RS18765	0.15	-1.4
4,046,971	-	DZA65_RS18765	0.16	-0.4
4,046,971	-	DZA65_RS18765	0.16	-0.5
4,046,993	+	DZA65_RS18765	0.18	-0.9
4,046,993	+	DZA65_RS18765	0.18	-0.9
4,046,994	-	DZA65_RS18765	0.18	-1.7
4,047,126	+	DZA65_RS18765	0.34	-0.4
4,047,163	+	DZA65_RS18765	0.38	-0.0
4,047,172	+	DZA65_RS18765	0.39	-1.7
4,047,205	+	DZA65_RS18765	0.43	+0.3
4,047,205	+	DZA65_RS18765	0.43	+0.3
4,047,205	+	DZA65_RS18765	0.43	-0.2
4,047,205	+	DZA65_RS18765	0.43	+2.1
4,047,205	+	DZA65_RS18765	0.43	+0.4
4,047,205	+	DZA65_RS18765	0.43	-0.7
4,047,205	+	DZA65_RS18765	0.43	-1.4
4,047,205	+			+0.6
4,047,205	+	DZA65_RS18765	0.43	+0.6
4,047,206	-	DZA65_RS18765	0.43	+0.4
4,047,206	-	DZA65_RS18765	0.43	-0.7
4,047,206	-	DZA65_RS18765	0.43	+0.3
4,047,206	-	DZA65_RS18765	0.43	-0.1
4,047,206	-	DZA65_RS18765	0.43	-0.2
4,047,206	-	DZA65_RS18765	0.43	+0.7
4,047,258	+	DZA65_RS18765	0.50	-0.0
4,047,259	-	DZA65_RS18765	0.50	-0.0
4,047,259	-	DZA65_RS18765	0.50	+0.8
4,047,309	+	DZA65_RS18765	0.56	-0.3
4,047,310	-	DZA65_RS18765	0.56	+0.6
4,047,359	+	DZA65_RS18765	0.61	-0.4
4,047,359	+	DZA65_RS18765	0.61	-0.8
4,047,359	+	DZA65_RS18765	0.61	-0.9
4,047,359	+	DZA65_RS18765	0.61	-0.4
4,047,360	-	DZA65_RS18765	0.62	-0.7
4,047,360	-	DZA65_RS18765	0.62	+0.1
4,047,398	-	DZA65_RS18765	0.66	+1.1
4,047,398	-	DZA65_RS18765	0.66	-0.7
4,047,415	+	DZA65_RS18765	0.68	+0.6
4,047,416	-	DZA65_RS18765	0.68	-0.1
4,047,416	-	DZA65_RS18765	0.68	-0.1
4,047,457	-	DZA65_RS18765	0.73	-0.8
4,047,486	-	DZA65_RS18765	0.76	-0.8
4,047,591	-	DZA65_RS18765	0.89	-1.5
4,047,621	+			+0.4
4,047,733	+			-0.2
4,047,733	+			-1.1
4,047,734	-			-0.2
4,047,737	-			+0.1
4,047,741	+			+0.9
4,047,799	-			-1.2
4,047,853	-			+0.5
4,047,854	+			-0.1
4,047,918	-			+0.6
4,047,927	-			-1.3
4,047,981	-	DZA65_RS18770	0.10	-1.1
4,047,986	+	DZA65_RS18770	0.10	+0.6
4,047,986	+	DZA65_RS18770	0.10	-1.2
4,047,986	+	DZA65_RS18770	0.10	-0.4
4,047,986	+	DZA65_RS18770	0.10	-1.9
4,047,986	+	DZA65_RS18770	0.10	+0.8
4,047,987	-	DZA65_RS18770	0.10	-0.4
4,047,987	-	DZA65_RS18770	0.10	+0.1
4,047,987	-	DZA65_RS18770	0.10	-0.7
4,047,987	-	DZA65_RS18770	0.10	+0.1
4,047,987	-	DZA65_RS18770	0.10	+0.1
4,047,987	-	DZA65_RS18770	0.10	+0.2
4,047,987	-	DZA65_RS18770	0.10	-0.4
4,048,006	-	DZA65_RS18770	0.12	-1.2
4,048,028	+	DZA65_RS18770	0.13	-0.8
4,048,028	+	DZA65_RS18770	0.13	-0.5
4,048,029	-	DZA65_RS18770	0.13	+0.4
4,048,029	-	DZA65_RS18770	0.13	+0.1
4,048,098	+	DZA65_RS18770	0.18	-1.1
4,048,098	+	DZA65_RS18770	0.18	-0.6
4,048,098	+	DZA65_RS18770	0.18	+0.3
4,048,098	+	DZA65_RS18770	0.18	-1.4
4,048,099	-	DZA65_RS18770	0.18	+0.1
4,048,099	-	DZA65_RS18770	0.18	-1.2
4,048,134	+	DZA65_RS18770	0.20	-0.4
4,048,134	+	DZA65_RS18770	0.20	-0.2
4,048,135	-	DZA65_RS18770	0.20	-0.2
4,048,135	-	DZA65_RS18770	0.20	-1.4
4,048,135	-	DZA65_RS18770	0.20	+0.6
4,048,135	-	DZA65_RS18770	0.20	+0.3
4,048,135	-	DZA65_RS18770	0.20	-1.8
4,048,137	+	DZA65_RS18770	0.20	-0.4
4,048,137	+	DZA65_RS18770	0.20	-0.1
4,048,137	+	DZA65_RS18770	0.20	-0.7
4,048,137	+	DZA65_RS18770	0.20	-0.4
4,048,137	+	DZA65_RS18770	0.20	-0.2
4,048,137	+	DZA65_RS18770	0.20	-0.2
4,048,137	+	DZA65_RS18770	0.20	-0.9
4,048,138	-	DZA65_RS18770	0.20	+0.2
4,048,138	-	DZA65_RS18770	0.20	+0.1
4,048,179	+	DZA65_RS18770	0.23	-0.7
4,048,179	+	DZA65_RS18770	0.23	-0.7
4,048,179	+	DZA65_RS18770	0.23	+1.4
4,048,179	+	DZA65_RS18770	0.23	-0.4
4,048,179	+	DZA65_RS18770	0.23	+0.2
4,048,179	+	DZA65_RS18770	0.23	+0.1
4,048,179	+	DZA65_RS18770	0.23	-0.1
4,048,179	+	DZA65_RS18770	0.23	-0.4
4,048,179	+	DZA65_RS18770	0.23	+0.1
4,048,179	+	DZA65_RS18770	0.23	-1.5
4,048,179	+	DZA65_RS18770	0.23	-1.5
4,048,179	+	DZA65_RS18770	0.23	-1.8
4,048,179	+	DZA65_RS18770	0.23	+2.3
4,048,179	+	DZA65_RS18770	0.23	-0.2
4,048,179	+	DZA65_RS18770	0.23	+0.3
4,048,180	-	DZA65_RS18770	0.23	-0.7
4,048,180	-	DZA65_RS18770	0.23	-0.1
4,048,180	-	DZA65_RS18770	0.23	-1.8
4,048,180	-	DZA65_RS18770	0.23	+0.2
4,048,398	+	DZA65_RS18770	0.37	-0.4
4,048,398	+	DZA65_RS18770	0.37	+0.1
4,048,398	+	DZA65_RS18770	0.37	+1.4
4,048,399	-	DZA65_RS18770	0.37	-0.9
4,048,399	-	DZA65_RS18770	0.37	-1.3
4,048,399	-	DZA65_RS18770	0.37	+0.1
4,048,399	-	DZA65_RS18770	0.37	+0.1
4,048,400	+	DZA65_RS18770	0.37	-1.2
4,048,401	-	DZA65_RS18770	0.37	+0.2
4,048,401	-	DZA65_RS18770	0.37	+0.2
4,048,401	-	DZA65_RS18770	0.37	-0.7
4,048,464	+	DZA65_RS18770	0.41	-1.2
4,048,465	-	DZA65_RS18770	0.41	-0.5
4,048,465	-	DZA65_RS18770	0.41	+1.5
4,048,465	-	DZA65_RS18770	0.41	-2.7
4,048,465	-	DZA65_RS18770	0.41	-0.8
4,048,465	-	DZA65_RS18770	0.41	+2.1
4,048,473	+	DZA65_RS18770	0.42	-0.0
4,048,485	+	DZA65_RS18770	0.42	-0.4
4,048,486	-	DZA65_RS18770	0.43	-0.7
4,048,489	-	DZA65_RS18770	0.43	-1.4
4,048,541	+	DZA65_RS18770	0.46	+0.6
4,048,541	+	DZA65_RS18770	0.46	+0.1
4,048,542	-	DZA65_RS18770	0.46	-0.6

Or see this region's nucleotide sequence