Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18500

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,987,072	+		DZA65_RS18495	0.61	-0.7
3,987,072	+		DZA65_RS18495	0.61	+0.2
3,987,072	+		DZA65_RS18495	0.61	+0.0
3,987,072	+		DZA65_RS18495	0.61	+0.0
3,987,072	+		DZA65_RS18495	0.61	+0.6
3,987,073	-		DZA65_RS18495	0.61	+0.0
3,987,073	-		DZA65_RS18495	0.61	-1.2
3,987,167	+		DZA65_RS18495	0.66	-0.5
3,987,168	-		DZA65_RS18495	0.66	-1.3
3,987,168	-		DZA65_RS18495	0.66	+1.2
3,987,168	-		DZA65_RS18495	0.66	-0.7
3,987,201	+		DZA65_RS18495	0.68	+0.6
3,987,201	+		DZA65_RS18495	0.68	-0.2
3,987,202	-		DZA65_RS18495	0.68	-0.8
3,987,275	+		DZA65_RS18495	0.72	+1.5
3,987,275	+		DZA65_RS18495	0.72	-0.2
3,987,275	+		DZA65_RS18495	0.72	-1.3
3,987,275	+		DZA65_RS18495	0.72	-0.4
3,987,276	-		DZA65_RS18495	0.72	-1.7
3,987,276	-		DZA65_RS18495	0.72	-0.5
3,987,276	-		DZA65_RS18495	0.72	-2.1
3,987,276	-		DZA65_RS18495	0.72	+1.0
3,987,328	-		DZA65_RS18495	0.75	-0.3
3,987,328	-		DZA65_RS18495	0.75	+0.0
3,987,328	-		DZA65_RS18495	0.75	+0.0
3,987,332	+		DZA65_RS18495	0.75	+0.2
3,987,332	+		DZA65_RS18495	0.75	-2.5
3,987,333	-		DZA65_RS18495	0.75	-0.2
3,987,368	+		DZA65_RS18495	0.77	-2.1
3,987,368	+		DZA65_RS18495	0.77	-1.2
3,987,368	+		DZA65_RS18495	0.77	-0.2
3,987,368	+		DZA65_RS18495	0.77	-0.1
3,987,369	-		DZA65_RS18495	0.77	+0.3
3,987,369	-		DZA65_RS18495	0.77	+0.3
3,987,369	-		DZA65_RS18495	0.77	-1.3
3,987,369	-		DZA65_RS18495	0.77	-0.5
3,987,427	-		DZA65_RS18495	0.80	+0.1
3,987,569	-		DZA65_RS18495	0.87	-0.1
3,987,636	+				-1.4
3,987,639	+				-1.0
3,987,640	-				+0.3
3,987,655	+				-0.5
3,987,655	+				-1.6
3,987,655	+				-0.2
3,987,681	+				+0.0
3,987,681	+				+2.6
3,987,681	+				-1.0
3,987,702	-				+0.6
3,987,720	+				+0.0
3,987,720	+				-2.4
3,987,721	-				-1.8
3,987,721	-				-0.5
3,987,792	-				-1.5
3,987,795	+				+0.6
3,987,795	+				-0.3
3,987,795	+				+0.2
3,987,795	+				-0.4
3,987,796	-				-1.5
3,987,805	-				-0.7
3,987,862	+				+1.0
3,987,863	-				-1.0
3,987,863	-				-1.2
3,987,941	-				-0.4
3,987,986	-				+1.0
3,988,000	+				-1.5
3,988,000	+				-0.8
3,988,000	+				-0.7
3,988,000	+				-0.4
3,988,000	+				-0.7
3,988,001	-				-0.4
3,988,001	-				+1.4
3,988,001	-				-1.1
3,988,001	-				-0.4
3,988,010	-				-0.1
3,988,019	+				-1.0
3,988,020	-				-2.0
3,988,020	-				+0.8
3,988,075	+				+1.6
3,988,075	+		DZA65_RS18500	0.12	-0.4
3,988,075	+		DZA65_RS18500	0.12	+0.0
3,988,076	-		DZA65_RS18500	0.12	-1.7
3,988,076	-		DZA65_RS18500	0.12	-1.3
3,988,129	+		DZA65_RS18500	0.19	+0.8
3,988,130	-		DZA65_RS18500	0.19	-1.7
3,988,130	-		DZA65_RS18500	0.19	-0.9
3,988,133	+		DZA65_RS18500	0.19	-1.2
3,988,215	+		DZA65_RS18500	0.29	-1.0
3,988,225	+		DZA65_RS18500	0.30	-0.8
3,988,304	-		DZA65_RS18500	0.39	-1.5
3,988,351	+		DZA65_RS18500	0.45	-0.9
3,988,428	+		DZA65_RS18500	0.54	+0.6
3,988,428	+		DZA65_RS18500	0.54	-0.3
3,988,428	+		DZA65_RS18500	0.54	-0.6
3,988,429	-		DZA65_RS18500	0.54	-1.0
3,988,429	-		DZA65_RS18500	0.54	-0.6
3,988,441	-		DZA65_RS18500	0.56	+0.1
3,988,441	-		DZA65_RS18500	0.56	-0.4
3,988,502	+		DZA65_RS18500	0.63	-1.5
3,988,503	-		DZA65_RS18500	0.63	-1.4
3,988,536	+		DZA65_RS18500	0.67	-1.2
3,988,536	+		DZA65_RS18500	0.67	+0.2
3,988,536	+		DZA65_RS18500	0.67	-1.5
3,988,536	+		DZA65_RS18500	0.67	-0.4
3,988,537	-		DZA65_RS18500	0.67	-0.4
3,988,537	-		DZA65_RS18500	0.67	+0.0
3,988,537	-		DZA65_RS18500	0.67	-0.5
3,988,537	-		DZA65_RS18500	0.67	-1.4
3,988,537	-		DZA65_RS18500	0.67	+0.6
3,988,639	+		DZA65_RS18500	0.79	+0.2
3,988,640	-		DZA65_RS18500	0.79	-1.2
3,988,640	-		DZA65_RS18500	0.79	+0.1
3,988,640	-		DZA65_RS18500	0.79	+0.6
3,988,750	+				+3.2
3,988,751	-				-0.4
3,988,789	+				-0.9
3,988,789	+				-0.7
3,988,789	+				+1.2
3,988,790	-				-1.8
3,988,790	-				+0.9
3,988,790	-				-0.8
3,988,793	-				-0.1
3,988,793	-				-0.3
3,988,793	-				-0.5
3,988,808	+				+0.3
3,988,809	-				-0.7
3,988,809	-				-1.1
3,988,855	+				+0.6
3,988,856	-				-0.1
3,988,885	+				+1.4
3,988,885	+				-0.2
3,988,886	-				+0.0
3,988,901	-				-0.7
3,988,921	+				+0.5
3,988,931	+				+0.0
3,988,939	-				+0.5
3,988,949	+				-0.4
3,988,959	+				-1.6
3,989,022	+				+0.6
3,989,025	+				-2.4
3,989,026	-				-0.5
3,989,063	+				+0.0
3,989,063	+				-0.2
3,989,063	+				-2.0
3,989,064	-				+0.9
3,989,075	+				-0.3
3,989,075	+				+2.6
3,989,075	+				+0.6
3,989,134	+				-0.2
3,989,134	+				+0.6
3,989,135	-				+0.2
3,989,151	-				-2.1
3,989,151	-				-1.1
3,989,151	-				-0.7
3,989,156	-				+0.0
3,989,156	-				+0.3
3,989,196	+				+0.9
3,989,197	-				+0.6
3,989,241	+				-0.2
3,989,241	+				+0.3
3,989,242	-				-0.1
3,989,242	-				-0.3
3,989,244	+				+2.2
3,989,287	+				-0.1
3,989,287	+				+0.1
3,989,287	+				-1.2
3,989,287	+				-0.7
3,989,287	+				-0.2
3,989,287	+				-1.3
3,989,288	-				+2.6
3,989,288	-				-1.7
3,989,288	-				-0.7
3,989,288	-				-2.2
3,989,288	-				-0.6
3,989,291	+				+0.6
3,989,292	-				+1.1
3,989,292	-				-0.7
3,989,292	-				-0.5
3,989,292	-				-0.3
3,989,296	+				+0.6
3,989,297	-				-0.5
3,989,297	-				-1.2
3,989,297	-				-1.0
3,989,365	+				+1.1
3,989,365	+				-2.0
3,989,365	+				-0.2
3,989,365	+				+0.6
3,989,365	+				-1.1
3,989,365	+				+0.6
3,989,366	-				-0.7
3,989,366	-				+0.0
3,989,366	-				-0.7
3,989,420	+				-0.2
3,989,421	-				+0.0
3,989,472	-				-1.4
3,989,522	-				-1.4
3,989,522	-				-1.5
3,989,522	-				+0.6
3,989,522	-				+0.9
3,989,528	-				-0.6
3,989,528	-				+0.4
3,989,528	-				+1.2
3,989,528	-				+0.3
3,989,528	-				+0.5
3,989,528	-				+0.9
3,989,528	-				+1.1
3,989,531	-				-1.5
3,989,531	-				+1.3
3,989,531	-				-0.7
3,989,531	-				-0.3
3,989,541	-				+0.4
3,989,544	-				-0.2
3,989,544	-				-0.4
3,989,544	-				+0.9
3,989,544	-				+0.3
3,989,590	+				-0.8
3,989,596	+				-0.4
3,989,604	+				-1.1
3,989,611	+				+1.0
3,989,643	+				-1.0
3,989,644	-				-0.4
3,989,644	-				+2.0
3,989,738	+		DZA65_RS18505	0.10	+0.5
3,989,739	-		DZA65_RS18505	0.11	+0.0
3,989,764	+		DZA65_RS18505	0.13	-1.0
3,989,765	-		DZA65_RS18505	0.13	-1.2
3,989,765	-		DZA65_RS18505	0.13	-1.8