Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17860

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,841,977	+		DZA65_RS17850	0.86	+0.6
3,841,977	+		DZA65_RS17850	0.86	-0.1
3,841,978	-		DZA65_RS17850	0.87	-2.6
3,842,046	+				-0.2
3,842,046	+				+0.6
3,842,046	+				+0.2
3,842,046	+				+0.3
3,842,047	-				-0.7
3,842,047	-				-0.2
3,842,051	+				-1.0
3,842,051	+				-0.7
3,842,052	-				-0.6
3,842,052	-				-0.2
3,842,052	-				-0.2
3,842,068	-				-2.6
3,842,068	-				-0.7
3,842,068	-				-0.5
3,842,117	+				-1.9
3,842,118	-				-2.2
3,842,147	+				+0.3
3,842,147	+				+0.9
3,842,147	+				+0.9
3,842,147	+				-0.1
3,842,148	-				-0.7
3,842,148	-				-0.3
3,842,148	-				-0.3
3,842,148	-				-1.0
3,842,148	-				-0.8
3,842,160	-				-1.7
3,842,374	+		DZA65_RS17855	0.27	-0.8
3,842,374	+		DZA65_RS17855	0.27	+0.3
3,842,375	-		DZA65_RS17855	0.27	-1.6
3,842,405	+		DZA65_RS17855	0.31	-1.2
3,842,406	-		DZA65_RS17855	0.31	-0.4
3,842,406	-		DZA65_RS17855	0.31	-2.0
3,842,406	-		DZA65_RS17855	0.31	-1.7
3,842,406	-		DZA65_RS17855	0.31	-1.6
3,842,406	-		DZA65_RS17855	0.31	-0.1
3,842,406	-		DZA65_RS17855	0.31	+0.6
3,842,407	+		DZA65_RS17855	0.32	+0.6
3,842,407	+		DZA65_RS17855	0.32	-0.4
3,842,407	+		DZA65_RS17855	0.32	-0.8
3,842,407	+		DZA65_RS17855	0.32	-0.6
3,842,408	-		DZA65_RS17855	0.32	+0.6
3,842,408	-		DZA65_RS17855	0.32	-1.3
3,842,408	-		DZA65_RS17855	0.32	-1.8
3,842,408	-		DZA65_RS17855	0.32	-1.1
3,842,408	-		DZA65_RS17855	0.32	+0.6
3,842,408	-		DZA65_RS17855	0.32	-1.6
3,842,408	-		DZA65_RS17855	0.32	+0.6
3,842,408	-		DZA65_RS17855	0.32	-0.7
3,842,408	-		DZA65_RS17855	0.32	+0.0
3,842,408	-		DZA65_RS17855	0.32	-1.3
3,842,408	-		DZA65_RS17855	0.32	+0.0
3,842,408	-		DZA65_RS17855	0.32	-0.5
3,842,408	-		DZA65_RS17855	0.32	-0.7
3,842,408	-		DZA65_RS17855	0.32	+0.0
3,842,408	-		DZA65_RS17855	0.32	-0.7
3,842,425	+		DZA65_RS17855	0.34	-0.4
3,842,425	+		DZA65_RS17855	0.34	-2.0
3,842,425	+		DZA65_RS17855	0.34	-0.6
3,842,425	+		DZA65_RS17855	0.34	+1.4
3,842,425	+		DZA65_RS17855	0.34	-0.7
3,842,425	+		DZA65_RS17855	0.34	-2.0
3,842,425	+		DZA65_RS17855	0.34	-0.8
3,842,425	+		DZA65_RS17855	0.34	+0.5
3,842,425	+		DZA65_RS17855	0.34	-0.3
3,842,425	+		DZA65_RS17855	0.34	+0.1
3,842,425	+		DZA65_RS17855	0.34	+0.1
3,842,425	+		DZA65_RS17855	0.34	+2.6
3,842,425	+		DZA65_RS17855	0.34	+0.6
3,842,425	+		DZA65_RS17855	0.34	+0.0
3,842,426	-		DZA65_RS17855	0.34	-0.6
3,842,426	-		DZA65_RS17855	0.34	+0.1
3,842,426	-		DZA65_RS17855	0.34	-1.0
3,842,426	-		DZA65_RS17855	0.34	+0.2
3,842,426	-		DZA65_RS17855	0.34	-0.8
3,842,426	-		DZA65_RS17855	0.34	-1.4
3,842,426	-		DZA65_RS17855	0.34	-1.0
3,842,426	-		DZA65_RS17855	0.34	-1.4
3,842,426	-				+0.6
3,842,426	-		DZA65_RS17855	0.34	-0.4
3,842,426	-		DZA65_RS17855	0.34	+0.3
3,842,426	-		DZA65_RS17855	0.34	-1.4
3,842,468	+		DZA65_RS17855	0.40	-1.6
3,842,512	-		DZA65_RS17855	0.46	+0.0
3,842,512	-		DZA65_RS17855	0.46	-1.0
3,842,772	-		DZA65_RS17855	0.81	+0.9
3,842,772	-		DZA65_RS17855	0.81	+0.0
3,842,772	-		DZA65_RS17855	0.81	-0.1
3,842,772	-		DZA65_RS17855	0.81	+0.5
3,842,772	-		DZA65_RS17855	0.81	+0.0
3,842,798	+		DZA65_RS17855	0.85	-0.1
3,842,929	-				-0.3
3,843,081	+		DZA65_RS17860	0.23	-0.7
3,843,178	+		DZA65_RS17860	0.36	-1.0
3,843,178	+		DZA65_RS17860	0.36	-2.0
3,843,179	-		DZA65_RS17860	0.36	-0.4
3,843,607	-				-0.4
3,843,648	+				+0.6
3,843,648	+				+0.4
3,843,649	-				+0.2
3,843,650	+				-0.6
3,843,650	+				-1.0
3,843,650	+				-0.4
3,843,650	+				+0.8
3,843,650	+				-2.0
3,843,651	-				-0.1
3,843,651	-				+0.6
3,843,651	-				+0.0
3,843,651	-				+0.0
3,843,651	-				+0.6
3,843,651	-				-0.5
3,843,651	-				+0.0
3,843,651	-				+0.1
3,843,651	-				-1.0
3,843,654	+				-1.8
3,843,784	+				-1.4
3,843,785	-				-0.3
3,843,860	-				-0.9
3,843,902	+				+0.3
3,843,902	+				-2.1
3,843,902	+				-1.0
3,843,902	+				+2.6
3,843,903	-				-1.2
3,843,903	-				+0.3
3,843,903	-				-0.5
3,843,919	+				-0.7
3,843,920	-				-0.1
3,843,920	-				-0.8
3,843,920	-				-0.6
3,843,950	+				+0.6
3,843,950	+				-1.0
3,843,950	+				+0.3
3,843,950	+				-1.8
3,843,950	+				+0.2
3,843,950	+				-1.0
3,843,950	+				+2.2
3,843,950	+				-0.4
3,843,950	+				-1.7
3,843,951	-				-0.6
3,843,951	-				-0.1
3,843,951	-				+0.6
3,843,951	-				-0.4
3,843,951	-				+1.0
3,843,951	-				+0.0
3,843,951	-				+0.3
3,843,968	-		DZA65_RS17865	0.10	-0.4
3,843,991	-		DZA65_RS17865	0.12	+0.8
3,844,006	-		DZA65_RS17865	0.13	-0.1
3,844,016	+		DZA65_RS17865	0.13	+0.0
3,844,016	+		DZA65_RS17865	0.13	+0.6
3,844,016	+		DZA65_RS17865	0.13	-0.6
3,844,098	-		DZA65_RS17865	0.19	-0.1
3,844,102	+		DZA65_RS17865	0.19	-0.2
3,844,193	+		DZA65_RS17865	0.25	+0.5
3,844,193	+		DZA65_RS17865	0.25	-1.2
3,844,194	-		DZA65_RS17865	0.25	-0.1
3,844,194	-		DZA65_RS17865	0.25	+0.4
3,844,194	-		DZA65_RS17865	0.25	-0.7
3,844,194	-		DZA65_RS17865	0.25	-0.1
3,844,194	-		DZA65_RS17865	0.25	-1.6
3,844,194	-		DZA65_RS17865	0.25	-0.6
3,844,194	-		DZA65_RS17865	0.25	-1.6
3,844,201	+		DZA65_RS17865	0.26	+1.0
3,844,201	+		DZA65_RS17865	0.26	-0.7
3,844,201	+		DZA65_RS17865	0.26	+0.5
3,844,201	+		DZA65_RS17865	0.26	-1.0
3,844,201	+		DZA65_RS17865	0.26	-0.6
3,844,201	+		DZA65_RS17865	0.26	+0.8
3,844,201	+		DZA65_RS17865	0.26	-0.4
3,844,202	-		DZA65_RS17865	0.26	+1.1
3,844,202	-		DZA65_RS17865	0.26	+0.8
3,844,202	-		DZA65_RS17865	0.26	-1.4
3,844,202	-		DZA65_RS17865	0.26	-0.6
3,844,400	-		DZA65_RS17865	0.39	+0.9
3,844,400	-		DZA65_RS17865	0.39	-2.1
3,844,400	-		DZA65_RS17865	0.39	-0.6
3,844,400	-		DZA65_RS17865	0.39	+0.2
3,844,434	-		DZA65_RS17865	0.42	-0.1
3,844,434	-				+1.0
3,844,456	-		DZA65_RS17865	0.43	-0.8
3,844,456	-		DZA65_RS17865	0.43	+0.5
3,844,540	+		DZA65_RS17865	0.49	+0.0
3,844,540	+		DZA65_RS17865	0.49	-0.6
3,844,540	+		DZA65_RS17865	0.49	-0.1
3,844,540	+		DZA65_RS17865	0.49	-0.5
3,844,541	-		DZA65_RS17865	0.49	+1.4
3,844,587	+		DZA65_RS17865	0.52	-1.0
3,844,588	-		DZA65_RS17865	0.52	+0.2
3,844,588	-		DZA65_RS17865	0.52	+0.4
3,844,628	+		DZA65_RS17865	0.55	-0.2
3,844,629	-		DZA65_RS17865	0.55	-1.8