Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS17360 and DZA65_RS17365 are separated by 76 nucleotides DZA65_RS17365 and DZA65_RS17370 are separated by 63 nucleotides DZA65_RS17370 and DZA65_RS17375 are separated by 38 nucleotides DZA65_RS17375 and DZA65_RS17380 are separated by 18 nucleotides
DZA65_RS17360: DZA65_RS17360 - class I SAM-dependent methyltransferase, at 3,743,781 to 3,744,731
_RS17360
DZA65_RS17365: DZA65_RS17365 - 50S ribosomal protein L19, at 3,744,808 to 3,745,155
_RS17365
DZA65_RS17370: DZA65_RS17370 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 3,745,219 to 3,745,974
_RS17370
DZA65_RS17375: DZA65_RS17375 - ribosome maturation factor RimM, at 3,746,013 to 3,746,561
_RS17375
DZA65_RS17380: DZA65_RS17380 - 30S ribosomal protein S16, at 3,746,580 to 3,746,828
_RS17380
Position (kb)
3745
3746 Strain fitness (log2 ratio)
-2
-1
0
1 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.235 kb on + strand, within DZA65_RS17360 at 3744.236 kb on - strand, within DZA65_RS17360 at 3744.236 kb on - strand, within DZA65_RS17360 at 3744.250 kb on + strand, within DZA65_RS17360 at 3744.271 kb on + strand, within DZA65_RS17360 at 3744.271 kb on + strand, within DZA65_RS17360 at 3744.271 kb on + strand, within DZA65_RS17360 at 3744.272 kb on - strand, within DZA65_RS17360 at 3744.286 kb on + strand, within DZA65_RS17360 at 3744.326 kb on - strand, within DZA65_RS17360 at 3744.400 kb on - strand, within DZA65_RS17360 at 3744.400 kb on - strand, within DZA65_RS17360 at 3744.476 kb on + strand, within DZA65_RS17360 at 3744.476 kb on + strand, within DZA65_RS17360 at 3744.476 kb on + strand, within DZA65_RS17360 at 3744.477 kb on - strand, within DZA65_RS17360 at 3744.477 kb on - strand, within DZA65_RS17360 at 3744.477 kb on - strand, within DZA65_RS17360 at 3744.479 kb on + strand, within DZA65_RS17360 at 3744.480 kb on - strand at 3744.550 kb on + strand, within DZA65_RS17360 at 3744.551 kb on - strand, within DZA65_RS17360 at 3744.551 kb on - strand, within DZA65_RS17360 at 3744.553 kb on + strand, within DZA65_RS17360 at 3744.554 kb on - strand, within DZA65_RS17360 at 3744.568 kb on + strand, within DZA65_RS17360 at 3744.569 kb on - strand, within DZA65_RS17360 at 3744.569 kb on - strand, within DZA65_RS17360 at 3744.661 kb on + strand at 3744.661 kb on + strand at 3744.661 kb on + strand at 3744.661 kb on + strand at 3744.661 kb on + strand at 3744.661 kb on + strand at 3744.661 kb on + strand at 3744.662 kb on - strand at 3744.662 kb on - strand at 3744.662 kb on - strand at 3744.662 kb on - strand at 3744.690 kb on + strand at 3744.729 kb on + strand at 3744.730 kb on - strand at 3746.935 kb on - strand at 3746.965 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,744,235 + DZA65_RS17360 0.48 +0.3 3,744,235 + DZA65_RS17360 0.48 -0.7 3,744,235 + DZA65_RS17360 0.48 +1.0 3,744,235 + DZA65_RS17360 0.48 +0.1 3,744,235 + DZA65_RS17360 0.48 -0.6 3,744,235 + DZA65_RS17360 0.48 -1.0 3,744,235 + DZA65_RS17360 0.48 -1.2 3,744,235 + DZA65_RS17360 0.48 -1.1 3,744,236 - DZA65_RS17360 0.48 +0.2 3,744,236 - DZA65_RS17360 0.48 -1.6 3,744,250 + DZA65_RS17360 0.49 -0.2 3,744,271 + DZA65_RS17360 0.52 -1.2 3,744,271 + DZA65_RS17360 0.52 -0.1 3,744,271 + DZA65_RS17360 0.52 -2.1 3,744,272 - DZA65_RS17360 0.52 +0.0 3,744,286 + DZA65_RS17360 0.53 -0.5 3,744,326 - DZA65_RS17360 0.57 -1.6 3,744,400 - DZA65_RS17360 0.65 +0.3 3,744,400 - DZA65_RS17360 0.65 +0.3 3,744,476 + DZA65_RS17360 0.73 -0.2 3,744,476 + DZA65_RS17360 0.73 -1.0 3,744,476 + DZA65_RS17360 0.73 -1.3 3,744,477 - DZA65_RS17360 0.73 +0.6 3,744,477 - DZA65_RS17360 0.73 +0.0 3,744,477 - DZA65_RS17360 0.73 +0.3 3,744,479 + DZA65_RS17360 0.73 -0.7 3,744,480 - +1.6 3,744,550 + DZA65_RS17360 0.81 +0.6 3,744,551 - DZA65_RS17360 0.81 -0.4 3,744,551 - DZA65_RS17360 0.81 +0.3 3,744,553 + DZA65_RS17360 0.81 -1.6 3,744,554 - DZA65_RS17360 0.81 +0.0 3,744,568 + DZA65_RS17360 0.83 +0.0 3,744,569 - DZA65_RS17360 0.83 +1.0 3,744,569 - DZA65_RS17360 0.83 -1.0 3,744,661 + +1.6 3,744,661 + -0.0 3,744,661 + -0.8 3,744,661 + -1.1 3,744,661 + -0.2 3,744,661 + +1.3 3,744,661 + +0.1 3,744,662 - +0.0 3,744,662 - +0.1 3,744,662 - -1.4 3,744,662 - -0.3 3,744,690 + +0.3 3,744,729 + -1.2 3,744,730 - -0.3 3,746,935 - -1.7 3,746,965 + +0.5
Or see this region's nucleotide sequence