Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16620

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,587,172	+		DZA65_RS16615	0.37	+0.8
3,587,172	+		DZA65_RS16615	0.37	-0.6
3,587,172	+		DZA65_RS16615	0.37	+0.3
3,587,173	-		DZA65_RS16615	0.37	-2.0
3,587,296	+		DZA65_RS16615	0.46	+0.2
3,587,296	+				+1.0
3,587,296	+		DZA65_RS16615	0.46	-0.0
3,587,296	+		DZA65_RS16615	0.46	-0.7
3,587,296	+		DZA65_RS16615	0.46	+1.6
3,587,296	+		DZA65_RS16615	0.46	+0.3
3,587,296	+		DZA65_RS16615	0.46	+0.2
3,587,296	+		DZA65_RS16615	0.46	-0.3
3,587,297	-		DZA65_RS16615	0.46	-1.4
3,587,297	-		DZA65_RS16615	0.46	-0.1
3,587,297	-		DZA65_RS16615	0.46	-1.8
3,587,297	-		DZA65_RS16615	0.46	-1.5
3,587,297	-		DZA65_RS16615	0.46	-0.9
3,587,517	+		DZA65_RS16615	0.62	-1.9
3,587,517	+		DZA65_RS16615	0.62	-0.6
3,587,517	+		DZA65_RS16615	0.62	+0.8
3,587,517	+		DZA65_RS16615	0.62	-1.4
3,587,517	+		DZA65_RS16615	0.62	+0.6
3,587,517	+		DZA65_RS16615	0.62	-0.9
3,587,517	+		DZA65_RS16615	0.62	+1.2
3,587,518	-		DZA65_RS16615	0.62	-0.0
3,587,518	-		DZA65_RS16615	0.62	+0.9
3,587,518	-		DZA65_RS16615	0.62	-0.7
3,587,518	-		DZA65_RS16615	0.62	+0.6
3,587,520	+		DZA65_RS16615	0.62	+0.9
3,587,520	+		DZA65_RS16615	0.62	-0.7
3,587,521	-		DZA65_RS16615	0.62	-1.0
3,587,521	-		DZA65_RS16615	0.62	-0.0
3,587,521	-		DZA65_RS16615	0.62	-0.0
3,587,521	-		DZA65_RS16615	0.62	-0.2
3,587,659	+		DZA65_RS16615	0.72	-1.7
3,587,659	+		DZA65_RS16615	0.72	+0.6
3,587,659	+		DZA65_RS16615	0.72	-1.0
3,587,660	-		DZA65_RS16615	0.72	-0.4
3,587,660	-		DZA65_RS16615	0.72	-0.7
3,587,660	-				+0.6
3,587,749	+		DZA65_RS16615	0.79	+0.8
3,587,749	+		DZA65_RS16615	0.79	-0.7
3,587,750	-		DZA65_RS16615	0.79	+0.3
3,587,750	-		DZA65_RS16615	0.79	-0.6
3,587,750	-		DZA65_RS16615	0.79	+0.6
3,587,750	-		DZA65_RS16615	0.79	-0.4
3,587,750	-		DZA65_RS16615	0.79	-1.0
3,587,750	-		DZA65_RS16615	0.79	-1.9
3,587,750	-				+0.6
3,587,750	-		DZA65_RS16615	0.79	-0.6
3,587,750	-		DZA65_RS16615	0.79	-0.9
3,587,750	-		DZA65_RS16615	0.79	-0.6
3,587,805	-		DZA65_RS16615	0.83	-0.0
3,587,915	+				-0.0
3,587,915	+				-0.3
3,587,939	+				-0.0
3,587,939	+				-0.8
3,587,983	+				+1.6
3,588,005	+				+0.1
3,588,049	+				+0.2
3,588,054	+				-1.5
3,588,055	-				-1.1
3,588,056	+				-0.4
3,588,056	+				-0.0
3,588,056	+				-0.3
3,588,056	+				+0.3
3,588,056	+				-0.2
3,588,056	+				+1.6
3,588,056	+				-0.2
3,588,056	+				+1.2
3,588,056	+				-1.4
3,588,056	+				-1.4
3,588,056	+				-1.6
3,588,056	+				-1.2
3,588,056	+				-0.6
3,588,056	+				-0.1
3,588,056	+				-0.3
3,588,057	-				+1.3
3,588,057	-				+0.8
3,588,057	-				-0.4
3,588,057	-				+0.6
3,588,057	-				-1.0
3,588,057	-				+0.3
3,588,057	-				-0.7
3,588,057	-				-1.0
3,588,057	-				-1.0
3,588,057	-				-0.5
3,588,057	-				-0.0
3,588,061	-				-0.1
3,588,070	+				-1.2
3,588,070	+				-0.4
3,588,070	+				+0.6
3,588,071	-				-1.8
3,588,080	-				-0.2
3,588,093	+				-0.2
3,588,094	-				-0.2
3,588,094	-				-0.2
3,588,094	-				-1.1
3,588,096	+				+1.5
3,588,096	+				-1.6
3,588,096	+				-0.9
3,588,097	-				-2.8
3,588,097	-				-0.2
3,588,097	-				+0.4
3,588,097	-				-1.0
3,588,111	-				-0.6
3,588,123	-				+0.6
3,588,135	+				+0.4
3,588,135	+				-0.6
3,588,135	+				+1.0
3,588,135	+				-1.1
3,588,135	+				-0.2
3,588,136	-				-1.3
3,588,136	-				-0.4
3,588,166	+				-1.9
3,588,166	+				+0.6
3,588,167	-				+0.3
3,588,167	-				-0.7
3,588,167	-				-0.3
3,588,167	-				-0.2
3,588,167	-				-0.9
3,588,168	+				-0.9
3,588,168	+				+0.8
3,588,168	+				-1.0
3,588,183	+				-0.0
3,588,183	+				-1.0
3,588,184	-				-0.3
3,588,185	+				-0.7
3,588,185	+				+0.4
3,588,185	+				+0.6
3,588,185	+				-0.0
3,588,186	-				+0.2
3,588,186	-				+0.5
3,588,186	-				-0.9
3,588,186	-				-1.4
3,588,319	+		DZA65_RS16620	0.17	+0.4
3,588,415	+		DZA65_RS16620	0.27	+0.0
3,588,426	+		DZA65_RS16620	0.28	+0.4
3,588,426	+		DZA65_RS16620	0.28	+0.4
3,588,426	+		DZA65_RS16620	0.28	-0.4
3,588,426	+		DZA65_RS16620	0.28	-1.6
3,588,427	-		DZA65_RS16620	0.28	-0.2
3,588,427	-		DZA65_RS16620	0.28	-0.6
3,588,427	-		DZA65_RS16620	0.28	-0.4
3,588,427	-		DZA65_RS16620	0.28	+0.3
3,588,427	-		DZA65_RS16620	0.28	-1.6
3,588,427	-		DZA65_RS16620	0.28	-0.7
3,588,427	-		DZA65_RS16620	0.28	-0.2
3,588,431	-		DZA65_RS16620	0.28	-0.7
3,588,431	-		DZA65_RS16620	0.28	+0.6
3,588,431	-		DZA65_RS16620	0.28	-0.9
3,588,431	-		DZA65_RS16620	0.28	+0.4
3,588,599	+		DZA65_RS16620	0.44	-0.9
3,588,599	+		DZA65_RS16620	0.44	-0.1
3,588,649	-		DZA65_RS16620	0.49	-1.2
3,588,649	-		DZA65_RS16620	0.49	-2.2
3,588,658	+		DZA65_RS16620	0.50	+0.6
3,588,658	+		DZA65_RS16620	0.50	+0.2
3,588,658	+		DZA65_RS16620	0.50	-1.0
3,588,658	+		DZA65_RS16620	0.50	-0.4
3,588,658	+		DZA65_RS16620	0.50	+1.0
3,588,658	+		DZA65_RS16620	0.50	-0.3
3,588,659	-		DZA65_RS16620	0.50	-0.9
3,588,712	-		DZA65_RS16620	0.55	-0.4
3,588,712	-		DZA65_RS16620	0.55	+0.7
3,588,712	-		DZA65_RS16620	0.55	-1.9
3,588,724	+		DZA65_RS16620	0.56	-0.0
3,588,724	+		DZA65_RS16620	0.56	-0.7
3,588,724	+		DZA65_RS16620	0.56	-1.7
3,588,725	-		DZA65_RS16620	0.56	-0.3
3,588,725	-		DZA65_RS16620	0.56	+0.7
3,588,725	-		DZA65_RS16620	0.56	-1.2
3,588,725	-		DZA65_RS16620	0.56	-0.0
3,588,728	-		DZA65_RS16620	0.56	+0.2
3,588,728	-		DZA65_RS16620	0.56	+0.4
3,588,728	-		DZA65_RS16620	0.56	-0.0
3,588,732	+		DZA65_RS16620	0.57	-1.3
3,588,743	+		DZA65_RS16620	0.58	-0.2
3,588,743	+		DZA65_RS16620	0.58	-0.1
3,588,744	-		DZA65_RS16620	0.58	-0.7
3,588,744	-				+1.6
3,588,835	+		DZA65_RS16620	0.67	-0.0
3,588,835	+		DZA65_RS16620	0.67	-0.4
3,588,835	+				+1.6
3,588,952	+		DZA65_RS16620	0.78	+0.1
3,588,952	+		DZA65_RS16620	0.78	-0.6
3,588,952	+		DZA65_RS16620	0.78	-0.4
3,588,953	-		DZA65_RS16620	0.78	+0.6
3,588,953	-		DZA65_RS16620	0.78	-1.6
3,588,953	-		DZA65_RS16620	0.78	-0.3
3,588,953	-		DZA65_RS16620	0.78	-0.2
3,588,953	-		DZA65_RS16620	0.78	-0.0
3,589,002	+		DZA65_RS16620	0.82	+2.2
3,589,002	+		DZA65_RS16620	0.82	-0.7
3,589,002	+		DZA65_RS16620	0.82	-1.1
3,589,002	+		DZA65_RS16620	0.82	-0.3
3,589,002	+		DZA65_RS16620	0.82	-0.7
3,589,003	-		DZA65_RS16620	0.83	-1.4
3,589,003	-		DZA65_RS16620	0.83	+1.6
3,589,003	-		DZA65_RS16620	0.83	+2.2
3,589,003	-		DZA65_RS16620	0.83	+1.1
3,589,003	-		DZA65_RS16620	0.83	+0.9
3,589,003	-		DZA65_RS16620	0.83	+0.8
3,589,071	+		DZA65_RS16620	0.89	+1.6
3,589,121	+				-0.7
3,589,165	-				-1.3
3,589,183	+				+0.6
3,589,183	+				+0.4
3,589,183	+				-0.7
3,589,183	+				-0.3
3,589,395	-		DZA65_RS16625	0.62	+0.3
3,589,397	+		DZA65_RS16625	0.63	+0.1
3,589,424	-		DZA65_RS16625	0.70	+0.3
3,589,569	+				+1.4
3,589,603	+				-0.4
3,589,604	-				-0.6
3,589,604	-				-1.3
3,589,634	+				+1.6
3,589,634	+				-0.5
3,589,634	+				-1.6
3,589,634	+				+1.0
3,589,634	+				+0.6
3,589,634	+				-0.7
3,589,635	-				+0.2
3,589,635	-				-1.9
3,589,635	-				+1.0
3,589,635	-				-0.2
3,589,635	-				-1.2