Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16250

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,524,497	-		DZA65_RS16240	0.67	-0.8
3,524,620	+		DZA65_RS16240	0.83	-1.0
3,524,631	-		DZA65_RS16240	0.84	-1.2
3,524,632	+		DZA65_RS16240	0.84	-1.4
3,524,632	+		DZA65_RS16240	0.84	+0.6
3,524,748	+				-0.3
3,524,756	+				+1.6
3,524,756	+				-1.5
3,524,757	-				-0.6
3,524,782	+				-0.1
3,524,787	+				+0.7
3,525,027	-		DZA65_RS16245	0.38	+0.9
3,525,028	+		DZA65_RS16245	0.39	-0.2
3,525,028	+		DZA65_RS16245	0.39	+0.3
3,525,028	+		DZA65_RS16245	0.39	-0.3
3,525,033	-		DZA65_RS16245	0.39	-0.6
3,525,108	-		DZA65_RS16245	0.50	+0.3
3,525,140	-		DZA65_RS16245	0.55	-0.6
3,525,243	-		DZA65_RS16245	0.69	-2.3
3,525,247	+		DZA65_RS16245	0.70	+0.7
3,525,435	+				-0.6
3,525,447	-				-0.8
3,525,707	-		DZA65_RS16250	0.37	-0.3
3,525,707	-		DZA65_RS16250	0.37	+0.5
3,525,755	+		DZA65_RS16250	0.44	-0.8
3,525,760	-		DZA65_RS16250	0.45	-1.9
3,525,796	+		DZA65_RS16250	0.50	+1.9
3,525,796	+		DZA65_RS16250	0.50	+0.1
3,525,796	+		DZA65_RS16250	0.50	+0.6
3,525,838	+		DZA65_RS16250	0.55	+1.0
3,525,838	+		DZA65_RS16250	0.55	+0.1
3,525,917	+		DZA65_RS16250	0.66	-1.2
3,525,918	-		DZA65_RS16250	0.66	+0.6
3,525,930	+		DZA65_RS16250	0.68	+0.1
3,525,930	+		DZA65_RS16250	0.68	-1.9
3,525,930	+		DZA65_RS16250	0.68	-0.2
3,525,930	+		DZA65_RS16250	0.68	+0.4
3,525,931	-		DZA65_RS16250	0.68	+0.4
3,525,988	-		DZA65_RS16250	0.76	-0.0
3,525,988	-		DZA65_RS16250	0.76	-0.8
3,525,990	+		DZA65_RS16250	0.76	-0.8
3,526,008	-		DZA65_RS16250	0.79	-0.0
3,526,008	-		DZA65_RS16250	0.79	-0.3
3,526,010	+		DZA65_RS16250	0.79	-0.2
3,526,010	+		DZA65_RS16250	0.79	-1.4
3,526,010	+		DZA65_RS16250	0.79	-1.0
3,526,011	-		DZA65_RS16250	0.79	+0.2
3,526,011	-		DZA65_RS16250	0.79	+1.1
3,526,011	-		DZA65_RS16250	0.79	-0.3
3,526,029	-		DZA65_RS16250	0.82	-0.3
3,526,029	-		DZA65_RS16250	0.82	+0.6
3,526,038	+		DZA65_RS16250	0.83	+0.2
3,526,163	-				-1.6
3,526,187	+				+0.2
3,526,197	+				+0.4
3,526,198	-				-0.8
3,526,201	-				-0.0
3,526,243	+		DZA65_RS16255	0.12	-0.0
3,526,243	+		DZA65_RS16255	0.12	-2.0
3,526,244	-		DZA65_RS16255	0.12	-0.0
3,526,336	-		DZA65_RS16255	0.26	-0.4
3,526,347	-		DZA65_RS16255	0.28	+0.7
3,526,347	-		DZA65_RS16255	0.28	+0.1
3,526,348	+		DZA65_RS16255	0.28	+0.3
3,526,348	+		DZA65_RS16255	0.28	-1.4
3,526,375	-		DZA65_RS16255	0.32	-1.4
3,526,397	+		DZA65_RS16255	0.35	-1.8
3,526,397	+		DZA65_RS16255	0.35	+0.2
3,526,407	+		DZA65_RS16255	0.36	+0.3
3,526,478	+		DZA65_RS16255	0.47	-0.8
3,526,479	-		DZA65_RS16255	0.47	-1.2
3,526,479	-		DZA65_RS16255	0.47	-1.5
3,526,479	-		DZA65_RS16255	0.47	+0.2
3,526,490	+		DZA65_RS16255	0.49	-0.9
3,526,491	-		DZA65_RS16255	0.49	-0.9
3,526,491	-		DZA65_RS16255	0.49	-1.0
3,526,492	+		DZA65_RS16255	0.49	+0.5
3,526,492	+		DZA65_RS16255	0.49	-0.1
3,526,506	-		DZA65_RS16255	0.51	-1.4
3,526,506	-		DZA65_RS16255	0.51	-1.0
3,526,578	+		DZA65_RS16255	0.62	-0.8
3,526,578	+		DZA65_RS16255	0.62	+0.4
3,526,579	-		DZA65_RS16255	0.62	+0.2
3,526,582	+		DZA65_RS16255	0.63	-1.7
3,526,582	+		DZA65_RS16255	0.63	-0.2
3,526,583	-		DZA65_RS16255	0.63	+0.6
3,526,583	-		DZA65_RS16255	0.63	-1.8
3,526,583	-		DZA65_RS16255	0.63	+0.2
3,526,585	-		DZA65_RS16255	0.63	+1.6
3,526,585	-		DZA65_RS16255	0.63	-0.1
3,526,587	+		DZA65_RS16255	0.63	-1.0
3,526,604	-		DZA65_RS16255	0.66	+0.3
3,526,604	-		DZA65_RS16255	0.66	-0.8
3,526,604	-		DZA65_RS16255	0.66	-0.4
3,526,611	+		DZA65_RS16255	0.67	-1.2
3,526,642	+		DZA65_RS16255	0.72	+0.6
3,526,642	+		DZA65_RS16255	0.72	+1.2
3,526,643	-		DZA65_RS16255	0.72	+0.2
3,526,676	+		DZA65_RS16255	0.77	-0.8
3,526,677	-		DZA65_RS16255	0.77	-1.6
3,526,739	+		DZA65_RS16255	0.86	-1.4
3,526,758	+		DZA65_RS16255	0.89	-0.5
3,526,759	-		DZA65_RS16255	0.89	+0.4
3,526,759	-		DZA65_RS16255	0.89	+0.4
3,526,759	-		DZA65_RS16255	0.89	-0.5
3,526,760	+		DZA65_RS16255	0.89	-0.8
3,526,761	-		DZA65_RS16255	0.89	-0.2
3,526,774	+				+0.6
3,526,780	+				-0.0
3,526,781	-				-2.3
3,526,782	+				-0.0
3,526,783	-				-0.2
3,526,783	-				+0.9
3,526,786	+				+0.9
3,526,786	+				-2.0
3,526,787	-				-1.1
3,526,787	-				+2.2
3,526,787	-				-1.0
3,526,787	-				+0.1
3,526,787	-				-0.9
3,526,787	-				-2.4
3,526,897	-				+0.2
3,526,897	-				+0.0
3,526,897	-				-0.3
3,526,917	+				-0.9
3,526,936	-		DZA65_RS16260	0.14	-1.4
3,526,936	-		DZA65_RS16260	0.14	-0.5
3,526,968	+		DZA65_RS16260	0.21	-0.4
3,526,968	+		DZA65_RS16260	0.21	+1.6
3,527,105	+		DZA65_RS16260	0.54	-0.4