Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15900

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,451,093	+		DZA65_RS15890	0.69	-0.5
3,451,094	-		DZA65_RS15890	0.69	+0.0
3,451,094	-		DZA65_RS15890	0.69	-0.9
3,451,094	-		DZA65_RS15890	0.69	-0.7
3,451,094	-		DZA65_RS15890	0.69	-0.8
3,451,117	+		DZA65_RS15890	0.73	+1.2
3,451,117	+		DZA65_RS15890	0.73	+0.1
3,451,117	+		DZA65_RS15890	0.73	-0.0
3,451,118	-		DZA65_RS15890	0.73	-1.0
3,451,118	-		DZA65_RS15890	0.73	-2.1
3,451,118	-		DZA65_RS15890	0.73	-1.4
3,451,148	-				+1.5
3,451,148	-		DZA65_RS15890	0.78	-0.8
3,451,179	+		DZA65_RS15890	0.83	-0.5
3,451,221	+				-1.8
3,451,221	+				-0.3
3,451,222	-				-1.3
3,451,222	-				+0.7
3,451,222	-				+0.2
3,451,228	-				-2.6
3,451,266	+				-2.0
3,451,267	-				-0.5
3,451,270	+				+0.8
3,451,271	-				-0.2
3,451,312	-				-0.0
3,451,312	-				-0.4
3,451,441	+		DZA65_RS15895	0.20	+0.5
3,451,442	-		DZA65_RS15895	0.20	+0.3
3,451,454	+		DZA65_RS15895	0.22	-0.0
3,451,455	-		DZA65_RS15895	0.22	+0.5
3,451,507	+		DZA65_RS15895	0.29	-0.5
3,451,508	-		DZA65_RS15895	0.29	-2.2
3,451,508	-		DZA65_RS15895	0.29	-0.3
3,451,531	+		DZA65_RS15895	0.32	-0.0
3,451,532	-		DZA65_RS15895	0.32	-1.5
3,451,532	-		DZA65_RS15895	0.32	+0.4
3,451,532	-		DZA65_RS15895	0.32	+1.3
3,451,584	+		DZA65_RS15895	0.39	-1.9
3,451,585	-				+2.1
3,451,591	-		DZA65_RS15895	0.40	+0.3
3,451,591	-		DZA65_RS15895	0.40	-0.8
3,451,626	+		DZA65_RS15895	0.45	-0.7
3,451,626	+		DZA65_RS15895	0.45	+2.1
3,451,627	-		DZA65_RS15895	0.45	-0.3
3,451,627	-		DZA65_RS15895	0.45	-1.1
3,451,675	-		DZA65_RS15895	0.51	-1.3
3,451,678	+		DZA65_RS15895	0.52	-0.0
3,451,678	+		DZA65_RS15895	0.52	+0.5
3,451,678	+		DZA65_RS15895	0.52	-1.7
3,451,678	+		DZA65_RS15895	0.52	-0.5
3,451,678	+		DZA65_RS15895	0.52	-1.5
3,451,678	+		DZA65_RS15895	0.52	+1.1
3,451,679	-		DZA65_RS15895	0.52	+0.3
3,451,679	-		DZA65_RS15895	0.52	-0.5
3,451,679	-		DZA65_RS15895	0.52	-0.9
3,451,691	+		DZA65_RS15895	0.53	+0.3
3,451,691	+		DZA65_RS15895	0.53	-1.3
3,451,691	+		DZA65_RS15895	0.53	-0.0
3,451,691	+		DZA65_RS15895	0.53	-0.5
3,451,692	-		DZA65_RS15895	0.53	+0.3
3,451,706	+		DZA65_RS15895	0.55	-0.0
3,451,707	-		DZA65_RS15895	0.55	-0.2
3,451,743	+		DZA65_RS15895	0.60	+0.4
3,451,744	-		DZA65_RS15895	0.60	-1.9
3,451,764	-		DZA65_RS15895	0.63	-0.1
3,451,766	+		DZA65_RS15895	0.63	-0.2
3,451,766	+		DZA65_RS15895	0.63	+0.5
3,451,766	+		DZA65_RS15895	0.63	-0.6
3,451,766	+		DZA65_RS15895	0.63	-0.6
3,451,766	+		DZA65_RS15895	0.63	-1.0
3,451,767	-		DZA65_RS15895	0.63	-0.5
3,451,767	-		DZA65_RS15895	0.63	-0.5
3,451,767	-		DZA65_RS15895	0.63	-0.3
3,451,767	-		DZA65_RS15895	0.63	-0.8
3,451,767	-		DZA65_RS15895	0.63	-0.5
3,451,767	-		DZA65_RS15895	0.63	-1.3
3,451,767	-		DZA65_RS15895	0.63	-0.5
3,451,767	-		DZA65_RS15895	0.63	-0.6
3,451,767	-		DZA65_RS15895	0.63	+0.4
3,451,770	+		DZA65_RS15895	0.64	+0.3
3,451,770	+		DZA65_RS15895	0.64	-0.9
3,451,770	+		DZA65_RS15895	0.64	+0.1
3,451,770	+		DZA65_RS15895	0.64	-0.4
3,451,770	+		DZA65_RS15895	0.64	+0.5
3,451,771	-		DZA65_RS15895	0.64	-0.3
3,451,771	-		DZA65_RS15895	0.64	+0.9
3,451,771	-		DZA65_RS15895	0.64	+1.1
3,451,776	+		DZA65_RS15895	0.65	+0.0
3,451,776	+		DZA65_RS15895	0.65	+1.0
3,451,776	+		DZA65_RS15895	0.65	-0.4
3,451,776	+		DZA65_RS15895	0.65	-1.0
3,451,776	+		DZA65_RS15895	0.65	+0.1
3,451,777	-		DZA65_RS15895	0.65	+0.2
3,451,777	-		DZA65_RS15895	0.65	-1.6
3,451,777	-		DZA65_RS15895	0.65	-0.1
3,451,777	-		DZA65_RS15895	0.65	+0.5
3,451,777	-		DZA65_RS15895	0.65	-0.1
3,451,777	-		DZA65_RS15895	0.65	+0.0
3,451,810	+		DZA65_RS15895	0.69	-1.0
3,451,810	+		DZA65_RS15895	0.69	-1.2
3,451,810	+		DZA65_RS15895	0.69	-0.5
3,451,811	-		DZA65_RS15895	0.69	-0.5
3,451,837	-		DZA65_RS15895	0.73	+1.0
3,451,837	-		DZA65_RS15895	0.73	+1.0
3,451,837	-		DZA65_RS15895	0.73	+1.0
3,451,837	-		DZA65_RS15895	0.73	+1.0
3,451,857	+		DZA65_RS15895	0.75	-2.5
3,451,860	+		DZA65_RS15895	0.76	-0.1
3,451,860	+				+0.5
3,451,860	+		DZA65_RS15895	0.76	-0.0
3,451,860	+		DZA65_RS15895	0.76	+0.1
3,451,860	+		DZA65_RS15895	0.76	-1.5
3,451,860	+		DZA65_RS15895	0.76	-0.6
3,451,861	-		DZA65_RS15895	0.76	-0.6
3,451,861	-		DZA65_RS15895	0.76	-2.3
3,451,861	-		DZA65_RS15895	0.76	-0.3
3,451,861	-		DZA65_RS15895	0.76	-0.8
3,451,861	-		DZA65_RS15895	0.76	+0.5
3,451,861	-		DZA65_RS15895	0.76	-0.8
3,451,966	+				+0.8
3,451,966	+				-1.8
3,451,966	+				-0.0
3,451,966	+				+0.4
3,451,966	+				+0.2
3,451,966	+				-1.0
3,451,966	+				-1.9
3,451,967	-				+1.1
3,451,967	-				-1.1
3,451,967	-				+0.5
3,451,967	-				+1.3
3,451,967	-				-0.9
3,451,967	-				-0.3
3,451,967	-				-0.8
3,451,967	-				-1.3
3,452,032	+				+0.4
3,452,033	-				-0.3
3,452,042	+				-0.4
3,452,042	+				+0.5
3,452,042	+				+0.5
3,452,042	+				-1.9
3,452,042	+				-1.6
3,452,043	-				-0.0
3,452,046	+				+0.1
3,452,047	-				+0.5
3,452,047	-				-1.0
3,452,047	-				+1.0
3,452,047	-				-1.3
3,452,047	-				-1.1
3,452,047	-				-0.7
3,452,047	-				+0.4
3,452,071	+				-0.8
3,452,072	-				-0.0
3,452,072	-				+1.7
3,452,072	-				-0.3
3,452,112	+		DZA65_RS15900	0.11	+1.1
3,452,112	+		DZA65_RS15900	0.11	+0.2
3,452,113	-		DZA65_RS15900	0.12	-1.5
3,452,214	-		DZA65_RS15900	0.39	+0.2
3,452,237	+		DZA65_RS15900	0.46	-0.5
3,452,380	+		DZA65_RS15900	0.85	+0.3
3,452,381	-		DZA65_RS15900	0.85	+2.1
3,452,381	-		DZA65_RS15900	0.85	+0.6
3,452,420	+				-0.6
3,452,420	+				-0.9
3,452,420	+				-1.6
3,452,421	-				-0.2
3,452,421	-				-1.8
3,452,421	-				-0.4
3,452,456	+				-0.4
3,452,456	+				-1.4
3,452,457	-				-0.5
3,452,458	+				-0.5
3,452,459	-				-0.7
3,452,459	-				-1.0
3,452,459	-				-0.9
3,452,459	-				-1.8
3,452,459	-				-0.0
3,452,483	-				+0.5
3,452,502	+				+0.5
3,452,508	+				+1.2
3,452,509	-				-0.3
3,452,509	-				-1.2
3,452,509	-				-1.0
3,452,509	-				+0.5
3,452,510	+				-0.6
3,452,510	+				+0.7
3,452,561	-				-1.5
3,452,561	-				-0.3
3,452,582	-				-1.6
3,452,599	+				-0.1
3,452,623	+				+0.2
3,452,623	+				-0.8
3,452,623	+				-0.8
3,452,624	-				-0.3
3,452,624	-				-1.0
3,452,624	-				-1.0
3,452,627	+				-0.1
3,452,627	+				-1.0
3,452,627	+				-1.6
3,452,627	+				-1.2
3,452,627	+				+1.2
3,452,628	-				-0.2
3,452,628	-				-1.9
3,452,662	+				-0.3
3,452,668	+				-0.6
3,452,669	-				+0.2
3,452,682	+				+0.5
3,452,718	-				+0.5
3,452,718	-				-0.6
3,452,774	+				+2.5
3,452,774	+				-1.2
3,452,775	-				-0.0
3,452,828	+				-0.6
3,452,828	+				-0.0
3,452,828	+				-2.0
3,452,829	-				-1.2
3,452,829	-				-0.6
3,452,829	-				-2.0
3,452,872	+		DZA65_RS15905	0.14	-0.9
3,452,872	+		DZA65_RS15905	0.14	-0.8
3,452,873	-		DZA65_RS15905	0.14	+0.5
3,452,873	-		DZA65_RS15905	0.14	-0.1
3,452,922	-		DZA65_RS15905	0.19	-0.3
3,452,922	-		DZA65_RS15905	0.19	-0.0
3,452,945	-		DZA65_RS15905	0.22	-0.5
3,452,945	-		DZA65_RS15905	0.22	-0.6
3,452,963	+		DZA65_RS15905	0.24	-0.3
3,452,963	+		DZA65_RS15905	0.24	+0.3
3,452,963	+		DZA65_RS15905	0.24	+0.5
3,452,964	-		DZA65_RS15905	0.24	-1.3
3,452,964	-		DZA65_RS15905	0.24	+0.1
3,452,964	-		DZA65_RS15905	0.24	-1.0
3,452,964	-		DZA65_RS15905	0.24	-0.0
3,452,964	-		DZA65_RS15905	0.24	+1.0
3,452,964	-		DZA65_RS15905	0.24	-0.3
3,453,008	+		DZA65_RS15905	0.28	-0.3
3,453,008	+		DZA65_RS15905	0.28	-0.5
3,453,009	-		DZA65_RS15905	0.29	-1.3
3,453,133	-		DZA65_RS15905	0.42	-0.9
3,453,140	+		DZA65_RS15905	0.43	-1.3
3,453,140	+		DZA65_RS15905	0.43	-0.8
3,453,140	+		DZA65_RS15905	0.43	-0.9
3,453,140	+		DZA65_RS15905	0.43	-0.4
3,453,140	+		DZA65_RS15905	0.43	-0.4
3,453,140	+		DZA65_RS15905	0.43	-0.8
3,453,140	+		DZA65_RS15905	0.43	+0.2
3,453,140	+		DZA65_RS15905	0.43	-1.3
3,453,140	+		DZA65_RS15905	0.43	-0.5
3,453,140	+		DZA65_RS15905	0.43	+0.8
3,453,141	-		DZA65_RS15905	0.43	+1.0
3,453,141	-		DZA65_RS15905	0.43	-0.1
3,453,141	-				+1.5
3,453,141	-		DZA65_RS15905	0.43	+1.2
3,453,141	-		DZA65_RS15905	0.43	+0.3
3,453,141	-		DZA65_RS15905	0.43	+0.1
3,453,171	+		DZA65_RS15905	0.46	-0.0
3,453,172	-		DZA65_RS15905	0.46	+0.1
3,453,172	-		DZA65_RS15905	0.46	+1.0
3,453,210	+		DZA65_RS15905	0.50	+0.2
3,453,210	+		DZA65_RS15905	0.50	+0.2
3,453,210	+		DZA65_RS15905	0.50	+0.2
3,453,210	+		DZA65_RS15905	0.50	-0.7
3,453,210	+		DZA65_RS15905	0.50	-0.6
3,453,211	-		DZA65_RS15905	0.50	-0.3
3,453,211	-		DZA65_RS15905	0.50	-0.0
3,453,211	-				+1.1
3,453,213	+		DZA65_RS15905	0.51	-1.3
3,453,213	+		DZA65_RS15905	0.51	+0.1
3,453,214	-		DZA65_RS15905	0.51	-0.5
3,453,214	-		DZA65_RS15905	0.51	-1.6
3,453,214	-		DZA65_RS15905	0.51	-0.0
3,453,222	-		DZA65_RS15905	0.52	-0.6
3,453,266	+		DZA65_RS15905	0.56	+0.2
3,453,266	+		DZA65_RS15905	0.56	+0.5
3,453,266	+		DZA65_RS15905	0.56	+2.1
3,453,266	+		DZA65_RS15905	0.56	-1.0
3,453,266	+		DZA65_RS15905	0.56	-0.2
3,453,266	+		DZA65_RS15905	0.56	-0.5
3,453,266	+		DZA65_RS15905	0.56	-0.5
3,453,266	+		DZA65_RS15905	0.56	-0.9
3,453,266	+		DZA65_RS15905	0.56	-0.2
3,453,267	-		DZA65_RS15905	0.56	+0.2
3,453,267	-		DZA65_RS15905	0.56	-0.5
3,453,267	-		DZA65_RS15905	0.56	+1.0
3,453,267	-		DZA65_RS15905	0.56	+0.9
3,453,267	-		DZA65_RS15905	0.56	+0.2
3,453,267	-		DZA65_RS15905	0.56	-0.5
3,453,267	-		DZA65_RS15905	0.56	-0.3
3,453,267	-		DZA65_RS15905	0.56	+0.5
3,453,267	-		DZA65_RS15905	0.56	-0.5
3,453,267	-		DZA65_RS15905	0.56	+1.1
3,453,267	-		DZA65_RS15905	0.56	-1.0
3,453,267	-		DZA65_RS15905	0.56	+0.8
3,453,267	-		DZA65_RS15905	0.56	+0.7
3,453,278	+		DZA65_RS15905	0.58	-2.0
3,453,278	+		DZA65_RS15905	0.58	+1.1
3,453,279	-		DZA65_RS15905	0.58	+0.2
3,453,279	-		DZA65_RS15905	0.58	+0.2
3,453,320	-		DZA65_RS15905	0.62	-0.0
3,453,406	+		DZA65_RS15905	0.71	+0.2
3,453,406	+		DZA65_RS15905	0.71	-1.2
3,453,407	-		DZA65_RS15905	0.72	-1.0
3,453,424	+		DZA65_RS15905	0.73	+0.3
3,453,426	+		DZA65_RS15905	0.74	-0.7
3,453,426	+		DZA65_RS15905	0.74	-1.5
3,453,426	+		DZA65_RS15905	0.74	-1.0
3,453,426	+		DZA65_RS15905	0.74	-0.5
3,453,426	+		DZA65_RS15905	0.74	+0.4
3,453,426	+		DZA65_RS15905	0.74	-0.2
3,453,426	+				+1.0
3,453,427	-		DZA65_RS15905	0.74	+0.2
3,453,427	-		DZA65_RS15905	0.74	-0.0
3,453,427	-		DZA65_RS15905	0.74	-0.3
3,453,427	-		DZA65_RS15905	0.74	-1.3
3,453,427	-		DZA65_RS15905	0.74	-0.9
3,453,427	-		DZA65_RS15905	0.74	+0.1
3,453,427	-		DZA65_RS15905	0.74	-1.8
3,453,427	-		DZA65_RS15905	0.74	-0.0
3,453,427	-		DZA65_RS15905	0.74	-0.2