Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15805

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,430,625	-		DZA65_RS15795	0.61	+0.5
3,430,768	+				+0.8
3,430,768	+				-0.3
3,430,769	-				-0.5
3,430,769	-				+0.5
3,430,772	+				-0.4
3,430,772	+				-1.8
3,430,773	-				+0.3
3,430,796	+				-0.4
3,430,807	+				-0.5
3,430,816	-				-0.0
3,430,817	+				+0.1
3,430,817	+				-0.3
3,430,817	+				+0.1
3,430,817	+				-0.6
3,430,818	-				-1.0
3,430,818	-				+0.8
3,430,818	-				-0.5
3,430,818	-				-0.8
3,430,821	+				+0.1
3,430,822	-				-0.8
3,430,825	+				-1.3
3,430,826	-				-1.0
3,430,826	-				+1.2
3,430,845	+				-1.5
3,430,845	+				-1.0
3,430,846	-				-0.7
3,430,846	-				-0.7
3,430,853	+				-0.8
3,430,854	-				-0.6
3,430,854	-				-0.8
3,430,856	-				-2.1
3,430,864	+				-3.0
3,430,865	-				-0.2
3,430,895	-				+0.2
3,430,987	+				-0.3
3,430,987	+				-0.3
3,430,987	+				-2.4
3,430,987	+				+0.5
3,430,987	+				-1.1
3,430,987	+				+0.8
3,430,988	-				+0.9
3,431,095	+				-0.0
3,431,124	+				-1.0
3,431,124	+				+0.7
3,431,124	+				+1.1
3,431,125	-				-0.0
3,431,125	-				-0.0
3,431,153	+				-0.9
3,431,153	+				-0.5
3,431,154	-				-0.3
3,431,154	-				+0.2
3,431,154	-				-0.8
3,431,156	+				-0.5
3,431,156	+				+1.1
3,431,214	+				+1.0
3,431,215	-				-0.7
3,431,242	+				-0.9
3,431,248	-				+0.2
3,431,265	+				+1.1
3,431,265	+				-0.6
3,431,266	-				+1.2
3,431,266	-				-0.6
3,431,266	-				+0.9
3,431,270	-				+0.2
3,431,270	-				-0.1
3,431,488	+				-1.3
3,431,527	-				-1.9
3,431,566	+				-0.5
3,431,567	-				-0.8
3,431,579	+				-0.0
3,431,579	+				-1.0
3,431,579	+				+0.2
3,431,585	+				-1.2
3,431,585	+				-1.3
3,431,586	-				-0.8
3,431,593	+				+1.7
3,431,597	-				-0.1
3,431,608	+				-2.2
3,431,608	+				-0.3
3,431,609	-				+0.9
3,431,609	-				+1.1
3,431,612	+				-0.5
3,431,612	+				+1.6
3,431,612	+				-1.3
3,431,613	-				+1.3
3,431,613	-				+1.8
3,431,613	-				-0.5
3,431,650	+				-1.0
3,431,650	+				+1.5
3,431,651	-				+0.8
3,431,651	-				+1.0
3,431,651	-				+0.5
3,431,675	+				+1.0
3,431,675	+				-0.0
3,431,676	-				-1.3
3,431,676	-				+0.2
3,431,676	-				+1.0
3,431,679	+				-0.0
3,431,679	+				-0.3
3,431,680	-				-0.1
3,431,680	-				-1.5
3,431,705	+		DZA65_RS15805	0.12	+1.8
3,431,706	-		DZA65_RS15805	0.12	-2.2
3,431,706	-		DZA65_RS15805	0.12	-1.0
3,431,765	+		DZA65_RS15805	0.18	-0.9
3,431,829	+		DZA65_RS15805	0.24	-0.0
3,431,829	+		DZA65_RS15805	0.24	-1.3
3,431,829	+		DZA65_RS15805	0.24	-0.2
3,431,829	+		DZA65_RS15805	0.24	-1.3
3,431,830	-		DZA65_RS15805	0.24	+1.0
3,431,830	-		DZA65_RS15805	0.24	-0.0
3,431,830	-		DZA65_RS15805	0.24	-0.6
3,431,830	-		DZA65_RS15805	0.24	-0.4
3,431,836	-		DZA65_RS15805	0.25	-0.8
3,431,848	+		DZA65_RS15805	0.26	-1.5
3,431,848	+		DZA65_RS15805	0.26	+1.0
3,431,848	+		DZA65_RS15805	0.26	-0.8
3,431,848	+		DZA65_RS15805	0.26	-0.7
3,431,848	+		DZA65_RS15805	0.26	-1.6
3,431,848	+		DZA65_RS15805	0.26	+0.2
3,431,849	-		DZA65_RS15805	0.26	-2.5
3,431,954	+		DZA65_RS15805	0.36	+0.1
3,431,954	+		DZA65_RS15805	0.36	-0.8
3,431,954	+		DZA65_RS15805	0.36	-1.6
3,431,955	-		DZA65_RS15805	0.36	-0.8
3,431,969	+		DZA65_RS15805	0.37	-0.6
3,432,101	+		DZA65_RS15805	0.50	-1.3
3,432,139	+		DZA65_RS15805	0.54	-0.8
3,432,269	+		DZA65_RS15805	0.66	-0.9
3,432,289	+		DZA65_RS15805	0.68	-0.8
3,432,290	-		DZA65_RS15805	0.68	-1.8
3,432,353	+		DZA65_RS15805	0.74	+0.8
3,432,353	+		DZA65_RS15805	0.74	-0.4
3,432,354	-		DZA65_RS15805	0.74	-0.3
3,432,354	-		DZA65_RS15805	0.74	+0.3
3,432,383	+		DZA65_RS15805	0.77	-0.4
3,432,416	+		DZA65_RS15805	0.80	-0.8
3,432,416	+		DZA65_RS15805	0.80	+0.2
3,432,417	-		DZA65_RS15805	0.80	-1.4
3,432,438	+		DZA65_RS15805	0.82	-0.8
3,432,438	+		DZA65_RS15805	0.82	-0.9
3,432,438	+		DZA65_RS15805	0.82	-0.8
3,432,439	-		DZA65_RS15805	0.83	-0.3
3,432,439	-		DZA65_RS15805	0.83	-0.5
3,432,439	-		DZA65_RS15805	0.83	-0.3
3,432,439	-		DZA65_RS15805	0.83	-2.3
3,432,439	-		DZA65_RS15805	0.83	+0.3
3,432,439	-		DZA65_RS15805	0.83	-0.5
3,432,480	+		DZA65_RS15805	0.86	-0.4
3,432,480	+		DZA65_RS15805	0.86	-0.3
3,432,482	+		DZA65_RS15805	0.87	+0.2
3,432,482	+		DZA65_RS15805	0.87	-1.6
3,432,513	+		DZA65_RS15805	0.90	-1.0
3,432,514	-		DZA65_RS15805	0.90	-2.5
3,432,534	-				-1.5
3,432,553	-				-0.5
3,432,553	-				-0.6
3,432,553	-				-1.6
3,432,553	-				-0.0
3,432,576	-				+0.1
3,432,587	+				-0.3
3,432,587	+				-0.3
3,432,588	-				-2.6
3,432,594	-				-1.9
3,432,695	+				+0.2
3,432,695	+				-0.4
3,432,695	+				-0.0
3,432,695	+				-0.7
3,432,695	+				+0.2
3,432,695	+				-1.3
3,432,696	-				+1.0
3,432,696	-				+0.5
3,432,696	-				+0.7
3,432,696	-				+0.4
3,432,696	-				-1.3
3,432,696	-				-0.0
3,432,696	-				-0.6
3,432,779	-				-0.0
3,432,804	+				-0.6
3,432,804	+				+0.4
3,432,804	+				-0.0
3,432,804	+				-0.3
3,432,804	+				-0.3
3,432,804	+				-0.9
3,432,805	-				+0.7
3,432,805	-				-1.6
3,432,805	-				+0.2
3,432,805	-				-0.2
3,432,851	+				-1.0
3,432,851	+				+3.1
3,432,851	+				-0.6
3,432,851	+				-0.5
3,432,851	+				-0.9
3,432,852	-				+0.5
3,432,852	-				-2.2
3,432,852	-				-1.3
3,432,852	-				-0.0
3,432,862	+				-0.9
3,432,869	+				+0.5
3,432,885	+				+0.7
3,432,885	+				-0.8
3,432,885	+				+1.0
3,432,904	-				+0.5
3,432,904	-				-0.8
3,432,950	-				+0.4
3,432,961	+				-1.0
3,432,961	+				-1.8
3,432,961	+				-1.3
3,432,961	+				-1.0
3,432,961	+				+0.2
3,432,961	+				-1.6
3,432,961	+				-0.0
3,432,961	+				+0.7
3,432,962	-				+0.1
3,432,962	-				+0.1
3,432,962	-				-1.0
3,432,962	-				-1.9
3,432,962	-				+0.6
3,433,012	-				+1.1
3,433,102	+				+0.5
3,433,102	+		DZA65_RS15810	0.11	+0.5
3,433,161	+		DZA65_RS15810	0.16	-0.0
3,433,161	+		DZA65_RS15810	0.16	-0.2
3,433,161	+		DZA65_RS15810	0.16	+2.5
3,433,162	-		DZA65_RS15810	0.16	-0.0
3,433,162	-		DZA65_RS15810	0.16	-1.9
3,433,162	-		DZA65_RS15810	0.16	-3.0
3,433,162	-		DZA65_RS15810	0.16	-2.2
3,433,162	-		DZA65_RS15810	0.16	+0.4
3,433,171	+		DZA65_RS15810	0.17	-1.5
3,433,171	+		DZA65_RS15810	0.17	-0.5
3,433,177	+		DZA65_RS15810	0.17	+0.2
3,433,177	+		DZA65_RS15810	0.17	+0.5
3,433,178	-		DZA65_RS15810	0.17	-0.0
3,433,178	-		DZA65_RS15810	0.17	-0.8
3,433,178	-		DZA65_RS15810	0.17	+0.3
3,433,283	-		DZA65_RS15810	0.26	+0.2
3,433,289	+		DZA65_RS15810	0.27	-0.5
3,433,324	+		DZA65_RS15810	0.29	-1.5
3,433,324	+		DZA65_RS15810	0.29	-1.0
3,433,324	+		DZA65_RS15810	0.29	+0.4
3,433,324	+		DZA65_RS15810	0.29	-0.3
3,433,325	-		DZA65_RS15810	0.29	-1.2
3,433,325	-		DZA65_RS15810	0.29	+1.4
3,433,325	-		DZA65_RS15810	0.29	-0.3
3,433,325	-		DZA65_RS15810	0.29	-1.0
3,433,325	-		DZA65_RS15810	0.29	+0.1
3,433,325	-		DZA65_RS15810	0.29	-0.9
3,433,347	+		DZA65_RS15810	0.31	+0.1
3,433,348	-		DZA65_RS15810	0.31	+0.5
3,433,369	+		DZA65_RS15810	0.33	-0.5
3,433,369	+		DZA65_RS15810	0.33	-1.2
3,433,369	+		DZA65_RS15810	0.33	-0.0
3,433,369	+		DZA65_RS15810	0.33	-0.9
3,433,369	+		DZA65_RS15810	0.33	+0.4
3,433,370	-		DZA65_RS15810	0.33	-1.6
3,433,370	-		DZA65_RS15810	0.33	+0.5
3,433,370	-		DZA65_RS15810	0.33	-0.5
3,433,441	+		DZA65_RS15810	0.39	-1.5
3,433,441	+		DZA65_RS15810	0.39	-0.8
3,433,441	+		DZA65_RS15810	0.39	-0.4
3,433,442	-		DZA65_RS15810	0.39	-0.5
3,433,442	-		DZA65_RS15810	0.39	+0.1
3,433,442	-		DZA65_RS15810	0.39	-0.8
3,433,442	-		DZA65_RS15810	0.39	+1.1
3,433,528	+		DZA65_RS15810	0.46	-1.3
3,433,528	+		DZA65_RS15810	0.46	-0.5
3,433,528	+		DZA65_RS15810	0.46	+1.2
3,433,528	+		DZA65_RS15810	0.46	-2.4
3,433,528	+		DZA65_RS15810	0.46	-0.5
3,433,528	+		DZA65_RS15810	0.46	+0.5
3,433,528	+		DZA65_RS15810	0.46	-1.0
3,433,528	+		DZA65_RS15810	0.46	-0.5
3,433,529	-		DZA65_RS15810	0.46	-0.3
3,433,529	-		DZA65_RS15810	0.46	+0.8
3,433,529	-		DZA65_RS15810	0.46	-1.0
3,433,529	-		DZA65_RS15810	0.46	+1.0
3,433,529	-		DZA65_RS15810	0.46	+0.4
3,433,529	-		DZA65_RS15810	0.46	-0.8