Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15730

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,415,354	+				-0.4
3,415,355	-				-1.3
3,415,355	-				-0.1
3,415,413	-				+0.5
3,415,421	-				-0.4
3,415,426	+				-1.8
3,415,426	+				-0.9
3,415,427	-				-0.7
3,415,427	-				-0.8
3,415,448	-				-1.0
3,415,488	+				-0.7
3,415,488	+				+0.0
3,415,489	-				+1.1
3,415,533	+				-0.5
3,415,534	-				-1.8
3,415,534	-				-0.0
3,415,536	+				-0.8
3,415,536	+				-0.6
3,415,536	+				+0.3
3,415,536	+				-1.5
3,415,536	+				-1.0
3,415,536	+				-1.0
3,415,537	-				-1.0
3,415,537	-				-0.5
3,415,537	-				-0.5
3,415,537	-				+0.5
3,415,537	-				-2.5
3,415,537	-				+0.8
3,415,537	-				+0.8
3,415,537	-				-1.0
3,415,537	-				-0.8
3,415,541	+				-2.5
3,415,541	+				-1.5
3,415,541	+				-1.4
3,415,542	-				-1.3
3,415,542	-				-0.0
3,415,542	-				-0.5
3,415,542	-				-1.0
3,415,557	+				+0.5
3,415,557	+				-1.0
3,415,557	+				+0.1
3,415,558	-				-0.4
3,415,573	-				-0.0
3,415,584	+				-0.5
3,415,585	-				-1.3
3,415,633	+				-0.8
3,415,645	-				-1.0
3,415,646	+				-1.5
3,415,720	+				-0.8
3,415,838	-				+0.2
3,415,887	+				-0.2
3,415,955	+				-0.0
3,415,969	-				+0.4
3,416,023	+				-1.5
3,416,023	+				+0.0
3,416,024	-				-1.6
3,416,024	-				-0.6
3,416,024	-				-1.0
3,416,046	+				-0.3
3,416,046	+				-1.4
3,416,046	+				-1.0
3,416,046	+				+0.5
3,416,046	+				-2.9
3,416,047	-				+0.1
3,416,047	-				-0.5
3,416,047	-				+0.5
3,416,047	-				-0.8
3,416,048	+				-1.8
3,416,048	+				+2.1
3,416,048	+				+0.3
3,416,048	+				-1.2
3,416,048	+				-0.8
3,416,048	+				+0.3
3,416,049	-				+0.2
3,416,049	-				-0.5
3,416,049	-				-0.0
3,416,049	-				-0.3
3,416,051	+				-0.9
3,416,051	+				+1.0
3,416,051	+				+1.5
3,416,051	+				-0.5
3,416,052	-				-1.6
3,416,052	-				-1.8
3,416,109	-		DZA65_RS15725	0.26	+1.8
3,416,109	-		DZA65_RS15725	0.26	-1.5
3,416,135	+				-0.5
3,416,135	+		DZA65_RS15725	0.41	-1.4
3,416,135	+		DZA65_RS15725	0.41	-0.1
3,416,135	+		DZA65_RS15725	0.41	+0.2
3,416,136	-		DZA65_RS15725	0.41	+0.0
3,416,136	-		DZA65_RS15725	0.41	-0.9
3,416,136	-		DZA65_RS15725	0.41	-0.0
3,416,136	-		DZA65_RS15725	0.41	+0.2
3,416,140	+		DZA65_RS15725	0.44	-0.5
3,416,197	+		DZA65_RS15725	0.76	-1.0
3,416,197	+		DZA65_RS15725	0.76	+0.5
3,416,197	+		DZA65_RS15725	0.76	-1.3
3,416,198	-		DZA65_RS15725	0.76	-2.6
3,416,214	+		DZA65_RS15725	0.85	-1.9
3,416,222	-				-1.5
3,416,229	+				-0.3
3,416,229	+				+2.0
3,416,237	+				+1.5
3,416,242	+				-0.8
3,416,242	+				-0.2
3,416,248	+				-0.0
3,416,251	+				-1.9
3,416,251	+				-0.0
3,416,251	+				-0.6
3,416,252	-		DZA65_RS15730	0.10	-0.5
3,416,252	-		DZA65_RS15730	0.10	-1.4
3,416,252	-		DZA65_RS15730	0.10	-0.6
3,416,252	-		DZA65_RS15730	0.10	-1.5
3,416,252	-		DZA65_RS15730	0.10	-0.9
3,416,252	-		DZA65_RS15730	0.10	-0.8
3,416,296	+		DZA65_RS15730	0.32	+0.4
3,416,297	-		DZA65_RS15730	0.32	-0.6
3,416,313	+		DZA65_RS15730	0.40	+0.5
3,416,313	+		DZA65_RS15730	0.40	-0.9
3,416,313	+		DZA65_RS15730	0.40	+2.0
3,416,313	+		DZA65_RS15730	0.40	+0.2
3,416,313	+		DZA65_RS15730	0.40	+0.8
3,416,314	-		DZA65_RS15730	0.41	+0.5
3,416,314	-		DZA65_RS15730	0.41	-0.3
3,416,314	-		DZA65_RS15730	0.41	-0.3
3,416,329	+		DZA65_RS15730	0.48	-1.3
3,416,330	-		DZA65_RS15730	0.49	-1.9
3,416,330	-		DZA65_RS15730	0.49	-3.4
3,416,330	-		DZA65_RS15730	0.49	-1.3
3,416,357	+		DZA65_RS15730	0.62	-0.9
3,416,523	+				-0.3
3,416,524	-				-0.3
3,416,619	+				-0.0
3,416,619	+				-0.8
3,416,655	+				+0.3
3,416,655	+				-0.4
3,416,697	+				-0.7
3,416,753	-				+1.3
3,416,753	-				+0.2
3,416,754	+				-1.0
3,416,755	-				-0.3
3,416,755	-				-0.4
3,416,755	-				-0.4
3,416,755	-				-2.7
3,416,755	-				-0.5
3,416,755	-				-0.6
3,416,790	+				-0.2
3,416,790	+				+0.5
3,416,797	+				-0.0
3,416,798	-				-0.9
3,416,805	+				-0.0
3,416,806	-				-1.3
3,416,961	+		DZA65_RS15735	0.15	+0.4
3,416,962	-		DZA65_RS15735	0.15	-0.0
3,417,012	-		DZA65_RS15735	0.20	+0.4
3,417,175	+		DZA65_RS15735	0.34	+0.5
3,417,175	+		DZA65_RS15735	0.34	-0.6
3,417,175	+		DZA65_RS15735	0.34	-0.8
3,417,176	-		DZA65_RS15735	0.34	-0.6
3,417,176	-		DZA65_RS15735	0.34	-0.5
3,417,187	-		DZA65_RS15735	0.35	-0.9
3,417,326	+		DZA65_RS15735	0.48	-0.2
3,417,326	+		DZA65_RS15735	0.48	-1.5
3,417,326	+		DZA65_RS15735	0.48	-1.8
3,417,326	+		DZA65_RS15735	0.48	-0.5
3,417,326	+		DZA65_RS15735	0.48	+1.5
3,417,327	-				+1.5
3,417,327	-		DZA65_RS15735	0.48	+0.5
3,417,327	-		DZA65_RS15735	0.48	-0.5
3,417,327	-		DZA65_RS15735	0.48	-0.5
3,417,327	-		DZA65_RS15735	0.48	-2.2
3,417,327	-		DZA65_RS15735	0.48	-0.3
3,417,328	+		DZA65_RS15735	0.48	-1.1
3,417,328	+		DZA65_RS15735	0.48	-0.3
3,417,328	+		DZA65_RS15735	0.48	-0.6
3,417,328	+		DZA65_RS15735	0.48	-0.6
3,417,328	+		DZA65_RS15735	0.48	-0.2
3,417,328	+		DZA65_RS15735	0.48	-1.3
3,417,328	+		DZA65_RS15735	0.48	-1.5
3,417,329	-		DZA65_RS15735	0.48	-0.8
3,417,329	-		DZA65_RS15735	0.48	+0.8
3,417,329	-		DZA65_RS15735	0.48	+0.3
3,417,329	-		DZA65_RS15735	0.48	-1.1
3,417,330	+		DZA65_RS15735	0.48	+0.5
3,417,330	+		DZA65_RS15735	0.48	-0.2
3,417,330	+		DZA65_RS15735	0.48	-0.5
3,417,330	+		DZA65_RS15735	0.48	-0.7
3,417,330	+		DZA65_RS15735	0.48	-1.3
3,417,330	+		DZA65_RS15735	0.48	-0.5
3,417,331	-		DZA65_RS15735	0.48	+0.1
3,417,331	-		DZA65_RS15735	0.48	-0.3
3,417,331	-		DZA65_RS15735	0.48	-1.3
3,417,382	+		DZA65_RS15735	0.53	-0.5
3,417,382	+		DZA65_RS15735	0.53	+0.0
3,417,383	-		DZA65_RS15735	0.53	+1.5
3,417,420	-		DZA65_RS15735	0.56	+1.3
3,417,420	-		DZA65_RS15735	0.56	+0.8