Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15665

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,400,839	+				-1.5
3,400,840	-				+0.3
3,400,903	-		DZA65_RS15655	0.11	-1.0
3,400,950	+		DZA65_RS15655	0.24	+0.5
3,400,950	+		DZA65_RS15655	0.24	+0.6
3,400,951	-		DZA65_RS15655	0.24	-0.4
3,400,992	-		DZA65_RS15655	0.35	+0.1
3,400,992	-		DZA65_RS15655	0.35	-2.4
3,401,021	+		DZA65_RS15655	0.43	-1.6
3,401,022	-		DZA65_RS15655	0.43	+0.1
3,401,022	-		DZA65_RS15655	0.43	-0.3
3,401,242	+				-0.9
3,401,242	+				-0.0
3,401,243	-				+0.3
3,401,280	-				-1.3
3,401,283	-				+0.0
3,401,306	+		DZA65_RS15660	0.12	-1.4
3,401,307	-		DZA65_RS15660	0.12	+1.1
3,401,307	-		DZA65_RS15660	0.12	-0.0
3,401,315	+		DZA65_RS15660	0.14	-0.8
3,401,316	-		DZA65_RS15660	0.14	-1.4
3,401,426	+		DZA65_RS15660	0.34	-0.3
3,401,426	+		DZA65_RS15660	0.34	+0.5
3,401,426	+		DZA65_RS15660	0.34	+0.5
3,401,426	+		DZA65_RS15660	0.34	-0.8
3,401,493	+		DZA65_RS15660	0.47	-0.6
3,401,503	+		DZA65_RS15660	0.49	+0.1
3,401,503	+		DZA65_RS15660	0.49	-0.8
3,401,503	+		DZA65_RS15660	0.49	+1.5
3,401,503	+		DZA65_RS15660	0.49	+0.9
3,401,503	+		DZA65_RS15660	0.49	+0.7
3,401,503	+		DZA65_RS15660	0.49	+0.3
3,401,504	-		DZA65_RS15660	0.49	-1.1
3,401,504	-		DZA65_RS15660	0.49	+0.8
3,401,504	-		DZA65_RS15660	0.49	-1.3
3,401,504	-		DZA65_RS15660	0.49	-0.7
3,401,504	-		DZA65_RS15660	0.49	+0.3
3,401,504	-		DZA65_RS15660	0.49	+0.2
3,401,508	+		DZA65_RS15660	0.49	-1.0
3,401,508	+		DZA65_RS15660	0.49	-0.5
3,401,508	+		DZA65_RS15660	0.49	-1.7
3,401,508	+		DZA65_RS15660	0.49	-0.0
3,401,508	+		DZA65_RS15660	0.49	-0.8
3,401,509	-		DZA65_RS15660	0.50	+0.8
3,401,509	-		DZA65_RS15660	0.50	-0.0
3,401,585	+		DZA65_RS15660	0.64	-0.0
3,401,586	-		DZA65_RS15660	0.64	-0.6
3,401,587	+		DZA65_RS15660	0.64	+0.8
3,401,587	+		DZA65_RS15660	0.64	+0.5
3,401,587	+		DZA65_RS15660	0.64	-0.6
3,401,587	+		DZA65_RS15660	0.64	-0.3
3,401,587	+		DZA65_RS15660	0.64	+0.7
3,401,587	+		DZA65_RS15660	0.64	+0.2
3,401,587	+		DZA65_RS15660	0.64	-0.0
3,401,587	+		DZA65_RS15660	0.64	-1.1
3,401,587	+		DZA65_RS15660	0.64	-0.8
3,401,587	+		DZA65_RS15660	0.64	+0.2
3,401,587	+		DZA65_RS15660	0.64	+0.1
3,401,587	+		DZA65_RS15660	0.64	-0.9
3,401,588	-		DZA65_RS15660	0.64	+0.2
3,401,588	-		DZA65_RS15660	0.64	-1.0
3,401,588	-		DZA65_RS15660	0.64	-0.0
3,401,588	-		DZA65_RS15660	0.64	+0.8
3,401,588	-		DZA65_RS15660	0.64	+0.7
3,401,588	-		DZA65_RS15660	0.64	-0.9
3,401,588	-		DZA65_RS15660	0.64	+1.0
3,401,588	-		DZA65_RS15660	0.64	+0.5
3,401,588	-		DZA65_RS15660	0.64	-1.3
3,401,588	-		DZA65_RS15660	0.64	-0.5
3,401,588	-		DZA65_RS15660	0.64	-0.6
3,401,588	-		DZA65_RS15660	0.64	-0.9
3,401,588	-		DZA65_RS15660	0.64	-0.0
3,401,588	-		DZA65_RS15660	0.64	+0.2
3,401,588	-		DZA65_RS15660	0.64	+1.4
3,401,588	-		DZA65_RS15660	0.64	+0.1
3,401,588	-		DZA65_RS15660	0.64	-1.0
3,401,588	-		DZA65_RS15660	0.64	-1.6
3,401,600	+		DZA65_RS15660	0.66	-1.8
3,401,601	-		DZA65_RS15660	0.67	-0.1
3,401,601	-		DZA65_RS15660	0.67	-1.9
3,401,633	-		DZA65_RS15660	0.73	+0.8
3,401,685	-		DZA65_RS15660	0.82	-0.1
3,401,736	+				-0.0
3,401,762	+				-0.0
3,401,762	+				+0.8
3,401,762	+				-0.8
3,401,762	+				+0.2
3,401,762	+				+0.3
3,401,762	+				-1.0
3,401,762	+				-1.0
3,401,762	+				-1.0
3,401,762	+				-1.0
3,401,763	-				-1.2
3,401,763	-				+2.0
3,401,763	-				-0.8
3,401,763	-				+0.5
3,401,763	-				-0.4
3,401,763	-				-0.5
3,401,763	-				-0.3
3,401,803	+				-1.4
3,401,804	-				+2.1
3,401,806	+				-0.2
3,401,806	+				-1.4
3,401,807	-				+0.0
3,401,842	+		DZA65_RS15665	0.13	-0.8
3,401,883	+		DZA65_RS15665	0.22	-0.3
3,401,884	-		DZA65_RS15665	0.22	+0.4
3,401,897	+		DZA65_RS15665	0.25	-0.6
3,401,897	+		DZA65_RS15665	0.25	+0.4
3,401,897	+		DZA65_RS15665	0.25	+0.4
3,401,897	+		DZA65_RS15665	0.25	-0.2
3,401,897	+		DZA65_RS15665	0.25	-0.5
3,401,898	-		DZA65_RS15665	0.25	+2.5
3,401,898	-		DZA65_RS15665	0.25	-0.3
3,401,898	-		DZA65_RS15665	0.25	-0.1
3,401,898	-		DZA65_RS15665	0.25	-0.3
3,401,898	-		DZA65_RS15665	0.25	-0.5
3,401,932	-		DZA65_RS15665	0.32	+1.5
3,401,932	-		DZA65_RS15665	0.32	+0.1
3,401,968	+		DZA65_RS15665	0.40	-0.8
3,401,969	-		DZA65_RS15665	0.40	-0.4
3,401,969	-		DZA65_RS15665	0.40	-1.4
3,401,969	-		DZA65_RS15665	0.40	-0.5
3,401,970	+		DZA65_RS15665	0.40	-1.5
3,401,970	+		DZA65_RS15665	0.40	-0.5
3,401,970	+		DZA65_RS15665	0.40	-0.5
3,401,970	+		DZA65_RS15665	0.40	+0.3
3,401,970	+		DZA65_RS15665	0.40	+1.0
3,401,970	+		DZA65_RS15665	0.40	-2.9
3,402,075	+		DZA65_RS15665	0.63	-0.5
3,402,075	+		DZA65_RS15665	0.63	-0.3
3,402,075	+		DZA65_RS15665	0.63	-0.5
3,402,075	+		DZA65_RS15665	0.63	+2.3
3,402,075	+		DZA65_RS15665	0.63	+0.4
3,402,075	+		DZA65_RS15665	0.63	+0.3
3,402,075	+		DZA65_RS15665	0.63	-1.2
3,402,075	+		DZA65_RS15665	0.63	+0.5
3,402,075	+		DZA65_RS15665	0.63	-0.6
3,402,075	+		DZA65_RS15665	0.63	-0.7
3,402,075	+		DZA65_RS15665	0.63	+0.1
3,402,076	-		DZA65_RS15665	0.63	-1.0
3,402,076	-		DZA65_RS15665	0.63	+0.7
3,402,076	-		DZA65_RS15665	0.63	+0.8
3,402,076	-		DZA65_RS15665	0.63	+0.1
3,402,076	-		DZA65_RS15665	0.63	+0.1
3,402,076	-		DZA65_RS15665	0.63	-1.0
3,402,076	-		DZA65_RS15665	0.63	+0.9
3,402,076	-		DZA65_RS15665	0.63	-2.2
3,402,076	-		DZA65_RS15665	0.63	+0.3
3,402,076	-		DZA65_RS15665	0.63	-0.0
3,402,076	-		DZA65_RS15665	0.63	-0.8
3,402,076	-		DZA65_RS15665	0.63	-1.0
3,402,076	-		DZA65_RS15665	0.63	+0.5
3,402,079	+		DZA65_RS15665	0.64	-1.9
3,402,079	+		DZA65_RS15665	0.64	+1.5
3,402,079	+		DZA65_RS15665	0.64	-1.0
3,402,104	+		DZA65_RS15665	0.69	-1.5
3,402,104	+		DZA65_RS15665	0.69	+0.2
3,402,105	-		DZA65_RS15665	0.70	-0.5
3,402,105	-		DZA65_RS15665	0.70	-0.3
3,402,105	-		DZA65_RS15665	0.70	+0.2
3,402,105	-		DZA65_RS15665	0.70	-0.9
3,402,179	+		DZA65_RS15665	0.86	-0.0
3,402,220	+				-2.0
3,402,220	+				-0.5
3,402,220	+				-1.0
3,402,221	-				+1.5
3,402,261	+				+0.5
3,402,266	+				+1.2
3,402,266	+				-1.5
3,402,266	+				-1.3
3,402,266	+				-0.9
3,402,266	+				+0.5
3,402,266	+				-2.2
3,402,267	-				-0.3
3,402,267	-				-0.8
3,402,267	-				+0.5
3,402,267	-				-0.6
3,402,267	-				-0.2
3,402,267	-				+1.1
3,402,267	-				-0.3
3,402,267	-				-1.0
3,402,267	-				-0.5
3,402,267	-				+1.0
3,402,279	+				-0.8
3,402,279	+				-1.3
3,402,279	+				-1.0
3,402,280	-				-1.2
3,402,280	-				-0.8
3,402,280	-				-1.8
3,402,280	-				-1.0
3,402,280	-				+0.5
3,402,280	-				-2.1
3,402,283	+				-2.0
3,402,283	+				-0.5
3,402,283	+				-0.7
3,402,283	+				-0.2
3,402,283	+				-1.3
3,402,283	+				-0.0
3,402,283	+				-1.0
3,402,283	+				+1.0
3,402,283	+				-1.9
3,402,283	+				-1.0
3,402,284	-				-1.6
3,402,284	-				+0.2
3,402,284	-				+0.0
3,402,284	-				-0.0
3,402,284	-				-1.6
3,402,284	-				+0.4
3,402,284	-				+1.0
3,402,295	+				-0.8
3,402,329	+				-0.0
3,402,330	-				+0.1
3,402,330	-				+1.1
3,402,619	+		DZA65_RS15670	0.28	-2.4
3,402,619	+		DZA65_RS15670	0.28	+0.2
3,402,620	-		DZA65_RS15670	0.28	-1.3
3,402,678	+		DZA65_RS15670	0.33	-0.3
3,402,691	+		DZA65_RS15670	0.34	-1.0
3,402,692	-		DZA65_RS15670	0.34	-0.8
3,402,692	-		DZA65_RS15670	0.34	-1.2
3,402,706	+		DZA65_RS15670	0.35	-0.5
3,402,810	-		DZA65_RS15670	0.43	+1.1
3,402,810	-		DZA65_RS15670	0.43	-0.5
3,402,828	+		DZA65_RS15670	0.45	-0.6
3,402,829	-		DZA65_RS15670	0.45	-0.8
3,402,898	+		DZA65_RS15670	0.51	-0.7
3,402,911	+		DZA65_RS15670	0.52	+0.4
3,402,911	+		DZA65_RS15670	0.52	+0.5
3,402,940	+				-0.0
3,402,940	+		DZA65_RS15670	0.54	+1.0
3,402,940	+		DZA65_RS15670	0.54	+0.5
3,402,941	-		DZA65_RS15670	0.54	+1.1
3,402,941	-		DZA65_RS15670	0.54	-0.8
3,402,941	-		DZA65_RS15670	0.54	-1.3
3,402,981	+		DZA65_RS15670	0.57	-1.1
3,402,981	+		DZA65_RS15670	0.57	+0.5
3,402,982	-		DZA65_RS15670	0.57	-0.5
3,402,982	-		DZA65_RS15670	0.57	-1.9
3,402,982	-		DZA65_RS15670	0.57	-0.5
3,402,982	-		DZA65_RS15670	0.57	+1.0
3,402,982	-		DZA65_RS15670	0.57	+0.2
3,402,982	-		DZA65_RS15670	0.57	+0.1
3,403,032	+		DZA65_RS15670	0.61	-0.6
3,403,032	+		DZA65_RS15670	0.61	-1.0
3,403,032	+		DZA65_RS15670	0.61	-0.0
3,403,032	+		DZA65_RS15670	0.61	+0.8
3,403,093	+		DZA65_RS15670	0.66	-2.0
3,403,094	-				-1.0
3,403,094	-		DZA65_RS15670	0.67	+1.2
3,403,094	-		DZA65_RS15670	0.67	-0.8
3,403,102	-		DZA65_RS15670	0.67	+0.3
3,403,102	-		DZA65_RS15670	0.67	+0.8
3,403,102	-		DZA65_RS15670	0.67	+1.1