Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15595

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,388,678	+		DZA65_RS15590	0.18	-1.6
3,388,730	-		DZA65_RS15590	0.23	-0.2
3,388,777	+		DZA65_RS15590	0.27	-1.7
3,388,777	+		DZA65_RS15590	0.27	-0.9
3,388,778	-		DZA65_RS15590	0.27	+0.5
3,388,801	+		DZA65_RS15590	0.29	-0.2
3,388,802	-		DZA65_RS15590	0.29	-0.9
3,388,832	+		DZA65_RS15590	0.31	-1.9
3,388,832	+		DZA65_RS15590	0.31	+0.4
3,388,832	+		DZA65_RS15590	0.31	-0.8
3,388,832	+		DZA65_RS15590	0.31	-1.0
3,388,833	-		DZA65_RS15590	0.31	-0.2
3,388,833	-		DZA65_RS15590	0.31	-1.9
3,388,964	+		DZA65_RS15590	0.42	-0.7
3,388,964	+		DZA65_RS15590	0.42	+0.5
3,388,965	-		DZA65_RS15590	0.42	-0.5
3,388,965	-		DZA65_RS15590	0.42	+0.5
3,388,965	-		DZA65_RS15590	0.42	-0.6
3,388,965	-		DZA65_RS15590	0.42	+0.3
3,388,965	-		DZA65_RS15590	0.42	+0.4
3,388,986	+		DZA65_RS15590	0.44	+0.5
3,388,986	+		DZA65_RS15590	0.44	-2.0
3,388,986	+		DZA65_RS15590	0.44	-0.1
3,388,986	+		DZA65_RS15590	0.44	-0.0
3,388,986	+		DZA65_RS15590	0.44	-1.5
3,388,987	-		DZA65_RS15590	0.44	+0.5
3,389,052	-		DZA65_RS15590	0.50	-1.5
3,389,052	-		DZA65_RS15590	0.50	+0.1
3,389,052	-		DZA65_RS15590	0.50	+1.5
3,389,052	-		DZA65_RS15590	0.50	-0.1
3,389,588	+				-1.4
3,389,853	+		DZA65_RS15595	0.13	-1.7
3,389,853	+		DZA65_RS15595	0.13	-1.2
3,389,854	-		DZA65_RS15595	0.13	-0.1
3,389,884	-		DZA65_RS15595	0.15	+0.5
3,389,884	-		DZA65_RS15595	0.15	+0.4
3,389,904	-		DZA65_RS15595	0.16	-0.6
3,389,904	-		DZA65_RS15595	0.16	+0.8
3,389,904	-		DZA65_RS15595	0.16	-0.0
3,389,904	-		DZA65_RS15595	0.16	-0.8
3,389,904	-		DZA65_RS15595	0.16	-1.3
3,389,904	-		DZA65_RS15595	0.16	-0.0
3,389,912	+		DZA65_RS15595	0.16	-0.3
3,389,912	+		DZA65_RS15595	0.16	-0.5
3,389,912	+		DZA65_RS15595	0.16	-0.2
3,389,912	+		DZA65_RS15595	0.16	-0.6
3,389,913	-		DZA65_RS15595	0.16	-0.8
3,389,913	-		DZA65_RS15595	0.16	-1.8
3,389,913	-		DZA65_RS15595	0.16	+0.5
3,389,913	-		DZA65_RS15595	0.16	+1.1
3,389,913	-		DZA65_RS15595	0.16	+1.2
3,389,988	-		DZA65_RS15595	0.21	+0.2
3,390,091	-		DZA65_RS15595	0.27	-2.1
3,390,244	-		DZA65_RS15595	0.37	-0.9
3,390,266	+		DZA65_RS15595	0.38	-0.8
3,390,267	-		DZA65_RS15595	0.38	-0.6
3,390,267	-		DZA65_RS15595	0.38	-0.8
3,390,267	-		DZA65_RS15595	0.38	-0.8
3,390,269	+		DZA65_RS15595	0.38	+0.3
3,390,269	+		DZA65_RS15595	0.38	-0.8
3,390,269	+		DZA65_RS15595	0.38	+0.1
3,390,269	+		DZA65_RS15595	0.38	-1.8
3,390,269	+		DZA65_RS15595	0.38	-0.6
3,390,269	+		DZA65_RS15595	0.38	+0.5
3,390,270	-		DZA65_RS15595	0.38	-0.5
3,390,270	-		DZA65_RS15595	0.38	+1.0
3,390,270	-		DZA65_RS15595	0.38	-0.3
3,390,270	-		DZA65_RS15595	0.38	-0.0
3,390,270	-		DZA65_RS15595	0.38	-1.2
3,390,270	-		DZA65_RS15595	0.38	+0.3
3,390,270	-				-0.0
3,390,272	+		DZA65_RS15595	0.38	-0.2
3,390,272	+		DZA65_RS15595	0.38	-1.0
3,390,272	+		DZA65_RS15595	0.38	-1.2
3,390,272	+		DZA65_RS15595	0.38	-1.2
3,390,272	+		DZA65_RS15595	0.38	+0.8
3,390,272	+		DZA65_RS15595	0.38	+0.8
3,390,272	+		DZA65_RS15595	0.38	+0.2
3,390,273	-		DZA65_RS15595	0.39	+0.5
3,390,273	-		DZA65_RS15595	0.39	+1.5
3,390,273	-		DZA65_RS15595	0.39	-0.3
3,390,273	-		DZA65_RS15595	0.39	-1.0
3,390,273	-		DZA65_RS15595	0.39	-1.6
3,390,273	-		DZA65_RS15595	0.39	-0.3
3,390,273	-		DZA65_RS15595	0.39	-0.5
3,390,317	-		DZA65_RS15595	0.41	-1.0
3,390,353	+		DZA65_RS15595	0.43	+0.2
3,390,354	-		DZA65_RS15595	0.44	-1.0
3,390,354	-		DZA65_RS15595	0.44	-0.4
3,390,354	-		DZA65_RS15595	0.44	+0.0
3,390,389	+		DZA65_RS15595	0.46	+0.2
3,390,390	-		DZA65_RS15595	0.46	+0.5
3,390,390	-		DZA65_RS15595	0.46	-1.0
3,390,390	-		DZA65_RS15595	0.46	+0.2
3,390,390	-		DZA65_RS15595	0.46	-0.7
3,390,390	-		DZA65_RS15595	0.46	-0.6
3,390,390	-		DZA65_RS15595	0.46	-0.0
3,390,558	+		DZA65_RS15595	0.56	+0.1
3,390,559	-		DZA65_RS15595	0.56	+0.5
3,390,668	+		DZA65_RS15595	0.63	-0.6
3,390,668	+		DZA65_RS15595	0.63	-1.0
3,390,668	+		DZA65_RS15595	0.63	-1.2
3,390,669	-		DZA65_RS15595	0.63	-0.5
3,390,669	-		DZA65_RS15595	0.63	-1.9
3,390,669	-		DZA65_RS15595	0.63	-1.0
3,390,669	-		DZA65_RS15595	0.63	-0.8
3,390,669	-		DZA65_RS15595	0.63	-1.3
3,390,669	-		DZA65_RS15595	0.63	-0.3
3,390,669	-		DZA65_RS15595	0.63	-0.8
3,390,669	-		DZA65_RS15595	0.63	+1.0
3,390,669	-		DZA65_RS15595	0.63	+0.5
3,390,669	-		DZA65_RS15595	0.63	-0.9
3,390,669	-		DZA65_RS15595	0.63	-1.1
3,390,827	+		DZA65_RS15595	0.73	-0.5
3,390,830	+		DZA65_RS15595	0.73	+2.5
3,390,831	-		DZA65_RS15595	0.73	-1.8
3,390,831	-		DZA65_RS15595	0.73	-1.0
3,390,863	-		DZA65_RS15595	0.75	-0.0
3,390,878	+		DZA65_RS15595	0.76	-0.2
3,390,879	-		DZA65_RS15595	0.76	-2.2
3,390,879	-		DZA65_RS15595	0.76	-1.8
3,390,879	-		DZA65_RS15595	0.76	-2.7
3,391,125	+				+1.2
3,391,125	+				+0.5
3,391,125	+				-0.9
3,391,125	+				+1.0
3,391,125	+				-0.0
3,391,125	+				-1.0
3,391,125	+				-0.6
3,391,125	+				-0.1
3,391,125	+				+0.4
3,391,126	-				-0.1
3,391,126	-				+0.5
3,391,126	-				-0.8
3,391,148	+				+1.1
3,391,149	-				-1.0
3,391,149	-				-1.6
3,391,271	+				-0.4
3,391,271	+				+2.0
3,391,271	+				-0.2
3,391,272	-				-0.5
3,391,272	-				+1.2
3,391,272	-				-1.0
3,391,272	-				-1.2
3,391,272	-				-0.9
3,391,282	+				+0.5
3,391,282	+				-1.5
3,391,283	-				+1.1
3,391,326	+				-0.2
3,391,342	+				-1.5
3,391,343	-				+0.8
3,391,343	-				-0.5
3,391,387	+		DZA65_RS15600	0.13	-0.3
3,391,388	-		DZA65_RS15600	0.13	-1.9
3,391,397	+		DZA65_RS15600	0.14	-1.0
3,391,397	+		DZA65_RS15600	0.14	-0.6
3,391,398	-		DZA65_RS15600	0.14	-0.0
3,391,398	-		DZA65_RS15600	0.14	-1.0
3,391,398	-		DZA65_RS15600	0.14	+0.1
3,391,398	-		DZA65_RS15600	0.14	-0.0
3,391,451	-		DZA65_RS15600	0.20	+1.9
3,391,502	+		DZA65_RS15600	0.26	-1.3
3,391,502	+		DZA65_RS15600	0.26	-0.8
3,391,502	+		DZA65_RS15600	0.26	+0.8
3,391,502	+				-0.8
3,391,502	+		DZA65_RS15600	0.26	-1.0
3,391,502	+		DZA65_RS15600	0.26	+0.4
3,391,503	-		DZA65_RS15600	0.26	-2.0
3,391,503	-		DZA65_RS15600	0.26	-0.3
3,391,503	-		DZA65_RS15600	0.26	-0.3
3,391,503	-		DZA65_RS15600	0.26	-2.0
3,391,550	-		DZA65_RS15600	0.31	-0.6
3,391,717	+		DZA65_RS15600	0.50	-1.3
3,391,717	+		DZA65_RS15600	0.50	-0.7
3,391,717	+		DZA65_RS15600	0.50	-0.5
3,391,718	-		DZA65_RS15600	0.50	-1.5
3,391,718	-		DZA65_RS15600	0.50	-0.6
3,391,718	-		DZA65_RS15600	0.50	-1.6
3,391,718	-		DZA65_RS15600	0.50	+0.5
3,391,730	+		DZA65_RS15600	0.52	+0.4
3,391,730	+		DZA65_RS15600	0.52	+0.2
3,391,731	-		DZA65_RS15600	0.52	-1.3
3,391,731	-		DZA65_RS15600	0.52	+0.5
3,391,731	-		DZA65_RS15600	0.52	-0.3
3,391,731	-		DZA65_RS15600	0.52	+0.2
3,391,771	+		DZA65_RS15600	0.56	-1.3
3,391,771	+		DZA65_RS15600	0.56	-0.5
3,391,772	-		DZA65_RS15600	0.57	-0.0
3,391,772	-		DZA65_RS15600	0.57	+0.3
3,391,772	-		DZA65_RS15600	0.57	+0.3
3,391,772	-		DZA65_RS15600	0.57	-0.5
3,391,851	-		DZA65_RS15600	0.66	-0.8
3,391,851	-		DZA65_RS15600	0.66	+0.6
3,392,006	+		DZA65_RS15600	0.83	+0.3
3,392,103	+				-0.0
3,392,103	+				-0.8
3,392,103	+				-0.8
3,392,103	+				-1.6
3,392,103	+				+0.4
3,392,104	-				+0.5
3,392,104	-				+1.0
3,392,104	-				-1.6
3,392,104	-				-0.3
3,392,104	-				-0.5
3,392,183	+				-0.8
3,392,183	+				-0.3
3,392,183	+				-0.5
3,392,183	+				-1.5
3,392,184	-				-1.5